Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99605 * 2 1 4 4 C 1.52998 * 109.47345 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46798 * 239.99803 * 3 2 1 6 6 C 1.53003 * 109.47067 * 119.99996 * 3 2 1 7 7 C 1.50698 * 109.46931 * 179.97438 * 6 3 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 3 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 O 1.42898 * 109.41880 * 178.67207 * 12 11 10 14 14 C 1.42900 * 114.00252 * 270.13180 * 13 12 11 15 15 C 1.53950 * 113.73977 * 248.73952 * 14 13 12 16 16 N 1.47811 * 86.03526 * 222.08655 * 15 14 13 17 17 C 1.36942 * 134.45663 * 204.64839 * 16 15 14 18 18 H 1.07993 * 120.00147 * 179.86346 * 17 16 15 19 19 C 1.38820 * 119.99732 * 359.86423 * 17 16 15 20 20 N 1.31621 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47164 * 90.00133 * 21 19 17 23 23 H 1.48502 * 109.46943 * 209.99568 * 21 19 17 24 24 H 1.48493 * 109.47067 * 329.99822 * 21 19 17 25 25 C 1.47577 * 91.05533 * 24.54887 * 16 15 14 26 26 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 27 27 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 28 28 H 1.07996 * 120.00593 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99950 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00030 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47317 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.46995 * 300.00513 * 4 3 2 33 33 H 1.09001 * 109.47029 * 60.00016 * 4 3 2 34 34 H 1.08996 * 109.47420 * 300.00103 * 5 3 2 35 35 H 1.09008 * 109.47080 * 60.00253 * 5 3 2 36 36 H 1.09003 * 109.46848 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46646 * 59.99769 * 6 3 2 38 38 H 1.09001 * 109.47188 * 299.99912 * 6 3 2 39 39 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 40 40 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 41 41 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 42 42 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 43 43 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 44 44 H 1.08994 * 112.94642 * 20.33216 * 14 13 12 45 45 H 1.09005 * 113.77098 * 336.34714 * 15 14 13 46 46 H 1.08995 * 113.77070 * 107.74480 * 15 14 13 47 47 H 0.96993 * 119.99596 * 180.02562 * 20 19 17 48 48 H 1.09000 * 113.77416 * 221.15573 * 25 16 15 49 49 H 1.09003 * 113.76723 * 89.75273 * 25 16 15 50 50 H 1.08994 * 109.50232 * 301.42239 * 26 12 11 51 51 H 1.09000 * 109.49784 * 181.32304 * 26 12 11 52 52 H 1.08994 * 109.58580 * 353.38021 * 27 9 7 53 53 H 1.09006 * 109.57831 * 113.65514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9431 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5452 3.4789 0.3393 9 7 4.5397 2.9828 2.2594 10 6 5.2821 4.2506 2.2728 11 6 5.0248 4.9620 3.6050 12 6 5.3746 4.0131 4.7577 13 8 5.1661 4.6816 6.0033 14 6 6.3138 5.3831 6.4858 15 6 6.9352 4.7601 7.7490 16 7 7.0774 6.1474 8.2388 17 6 7.9046 6.7674 9.1370 18 1 7.8039 7.8266 9.3218 19 6 8.8724 6.0342 9.8099 20 7 8.9947 4.7432 9.5850 21 14 10.0003 6.8798 11.0356 22 1 9.3842 6.8374 12.3861 23 1 11.3101 6.1808 11.0670 24 1 10.2031 8.2933 10.6282 25 6 5.9723 6.5964 7.3698 26 6 4.4824 2.7716 4.6898 27 6 4.7344 2.0383 3.3680 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6141 3.4120 -0.0011 32 1 0.4428 2.4101 -0.8908 33 1 0.4422 2.4105 0.8891 34 1 3.6514 0.5578 -1.2492 35 1 2.3163 1.3284 -2.1392 36 1 3.4876 2.3304 -1.2494 37 1 3.6514 0.5578 1.2492 38 1 2.3164 1.3285 2.1393 39 1 6.3483 4.0509 2.1651 40 1 4.9436 4.8809 1.4506 41 1 5.6443 5.8568 3.6651 42 1 3.9734 5.2417 3.6709 43 1 6.4196 3.7140 4.6766 44 1 7.0389 5.6015 5.7020 45 1 6.2372 4.1581 8.3310 46 1 7.8851 4.2569 7.5689 47 1 9.6707 4.2309 10.0555 48 1 6.1550 7.5566 6.8874 49 1 4.9909 6.5350 7.8401 50 1 3.4361 3.0720 4.7457 51 1 4.7163 2.1094 5.5233 52 1 4.0328 1.2100 3.2698 53 1 5.7553 1.6567 3.3478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105709360.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -5.868850 kcal Electronic energy + Delta-G solvation = -29689.607745 eV Core-core repulsion = 25756.847046 eV Total energy + Delta-G solvation = -3932.760700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.78396 -39.02323 -37.95014 -36.88286 -35.45022 -32.40406 -31.98374 -31.40818 -31.10824 -28.33850 -27.48318 -27.43588 -24.92424 -24.72597 -23.66875 -22.82563 -22.57177 -20.93941 -19.53851 -19.06110 -18.40226 -17.60043 -16.87327 -16.41247 -16.03709 -15.85967 -15.66286 -15.02656 -14.72135 -14.50996 -14.46772 -14.30840 -13.91585 -13.79137 -13.55472 -13.41165 -12.95832 -12.83620 -12.63364 -12.30092 -12.03574 -11.98462 -11.91058 -11.72714 -11.51299 -11.41770 -11.35435 -11.21772 -11.17318 -11.10235 -10.90819 -10.89668 -10.68201 -10.49280 -10.23220 -10.00079 -9.70815 -9.62792 -9.55821 -8.86370 -8.81392 -8.73409 -6.91580 -5.79554 -3.12329 1.95962 2.40738 2.76615 3.37707 3.42192 3.44455 3.92388 4.18555 4.42438 4.46516 4.54591 4.62634 4.66516 4.82258 4.90377 4.96122 5.02824 5.10487 5.11989 5.20095 5.22502 5.28609 5.35384 5.36456 5.42934 5.49625 5.51191 5.57624 5.60001 5.65739 5.71519 5.75842 5.77165 5.79177 5.85139 5.91034 6.04245 6.16028 6.19498 6.22893 6.30763 6.40123 6.41908 6.50102 6.61879 6.64135 7.09137 7.18177 7.21606 7.50773 7.85987 7.95719 7.98865 9.01820 9.67630 10.56496 11.37759 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033054 B = 0.001877 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.897695 B =14915.747073 C =15096.117279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.129 4.129 7 C 0.518 3.482 8 O -0.535 6.535 9 N -0.612 5.612 10 C 0.113 3.887 11 C -0.155 4.155 12 C 0.091 3.909 13 O -0.373 6.373 14 C 0.035 3.965 15 C 0.149 3.851 16 N -0.609 5.609 17 C -0.221 4.221 18 H 0.082 0.918 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.121 3.879 26 C -0.132 4.132 27 C 0.108 3.892 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.254 0.746 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 -10.523 -20.419 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.021 4.021 4 C -0.212 4.212 5 C -0.206 4.206 6 C -0.169 4.169 7 C 0.307 3.693 8 O -0.413 6.413 9 N -0.346 5.346 10 C -0.009 4.009 11 C -0.194 4.194 12 C 0.033 3.967 13 O -0.291 6.291 14 C -0.024 4.024 15 C 0.024 3.976 16 N -0.337 5.337 17 C -0.349 4.349 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.005 4.005 26 C -0.170 4.170 27 C -0.015 4.015 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.105 0.895 52 H 0.107 0.893 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.388 -10.088 -20.576 26.540 hybrid contribution 0.810 0.201 0.905 1.231 sum -12.578 -9.887 -19.671 25.356 Atomic orbital electron populations 1.24030 0.96196 1.02108 1.00905 1.22941 0.95939 0.97551 0.99969 1.19384 0.94940 0.93320 0.94409 1.22177 0.98533 0.99613 1.00911 1.22050 0.99211 1.03490 0.95831 1.21752 0.99221 0.95736 1.00154 1.20629 0.78814 0.88585 0.81235 1.90563 1.64510 1.50815 1.35381 1.48231 1.43858 1.19781 1.22720 1.21584 0.95846 0.84868 0.98622 1.22516 1.03364 0.99334 0.94142 1.22009 0.98522 0.91573 0.84626 1.87949 1.37295 1.67852 1.36020 1.25025 0.86956 0.94689 0.95703 1.22746 0.98028 0.88515 0.88335 1.45692 1.34630 1.05323 1.48084 1.18999 1.08451 0.92518 1.14883 0.90071 1.24815 0.99627 0.95796 1.00303 1.69826 1.36310 1.05598 1.45095 0.86085 0.79990 0.78398 0.81090 1.21551 1.21594 1.20556 1.22728 0.92593 0.94812 0.90376 1.21981 1.01205 0.96875 0.96942 1.21814 1.02505 0.91739 0.85410 0.87798 0.88726 0.87513 0.89540 0.92828 0.93198 0.93434 0.93016 0.89490 0.88832 0.88729 0.91397 0.88777 0.90298 0.90870 0.92046 0.90227 0.94853 0.90963 0.93605 0.93633 0.94031 0.90747 0.89543 0.89265 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 13.70 29.01 0.40 -0.92 16 2 C -0.15 -1.02 8.76 -36.02 -0.32 -1.33 16 3 C -0.02 -0.16 0.74 -155.66 -0.11 -0.28 16 4 C -0.16 -1.38 6.83 37.16 0.25 -1.13 16 5 C -0.15 -1.29 8.16 37.16 0.30 -0.99 16 6 C -0.13 -0.96 3.10 -27.88 -0.09 -1.05 16 7 C 0.52 5.23 7.11 -10.99 -0.08 5.15 16 8 O -0.53 -6.79 10.76 5.56 0.06 -6.73 16 9 N -0.61 -5.86 2.97 -172.74 -0.51 -6.37 16 10 C 0.11 1.16 6.42 -3.71 -0.02 1.14 16 11 C -0.16 -1.78 5.72 -26.45 -0.15 -1.93 16 12 C 0.09 1.17 2.45 -26.53 -0.07 1.10 16 13 O -0.37 -6.31 10.01 -35.23 -0.35 -6.66 16 14 C 0.03 0.67 4.29 -25.80 -0.11 0.56 16 15 C 0.15 3.57 7.36 -2.84 -0.02 3.55 16 16 N -0.61 -15.95 3.70 -177.97 -0.66 -16.61 16 17 C -0.22 -6.27 10.70 -15.05 -0.16 -6.43 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.34 11.39 55.49 0.63 -26.71 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.57 8.77 -2.97 -0.03 2.55 16 26 C -0.13 -1.34 5.73 -26.59 -0.15 -1.50 16 27 C 0.11 0.85 6.34 -3.68 -0.02 0.83 16 28 H 0.10 0.70 5.69 -52.49 -0.30 0.41 16 29 H 0.09 0.53 8.06 -52.48 -0.42 0.11 16 30 H 0.11 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.09 0.96 5.51 -51.93 -0.29 0.67 16 32 H 0.05 0.45 7.50 -51.93 -0.39 0.06 16 33 H 0.05 0.41 7.49 -51.93 -0.39 0.03 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.09 0.93 5.51 -51.93 -0.29 0.65 16 37 H 0.09 0.55 7.94 -51.93 -0.41 0.14 16 38 H 0.09 0.63 7.69 -51.93 -0.40 0.23 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 44 H 0.08 1.45 7.80 -51.93 -0.41 1.04 16 45 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.09 0.51 5.93 -51.93 -0.31 0.20 16 53 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -32.23 406.21 -9.56 -41.79 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -9.35 Total: -0.90 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.47 Total: -1.03 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.54 Total: -49.68 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.29 Total: -13.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.23 -9.56 -41.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105709360.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.921 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds