Wall clock time and date at job start Tue Mar 31 2020 20:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99605 * 2 1 4 4 C 1.52998 * 109.47345 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46798 * 239.99803 * 3 2 1 6 6 C 1.53003 * 109.47067 * 119.99996 * 3 2 1 7 7 C 1.50698 * 109.46931 * 179.97438 * 6 3 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 3 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 O 1.42898 * 109.41880 * 178.67207 * 12 11 10 14 14 C 1.42900 * 114.00252 * 270.13180 * 13 12 11 15 15 C 1.53950 * 113.73977 * 248.73952 * 14 13 12 16 16 N 1.47811 * 86.03526 * 222.08655 * 15 14 13 17 17 C 1.36942 * 134.45663 * 204.64839 * 16 15 14 18 18 H 1.07993 * 120.00147 * 179.86346 * 17 16 15 19 19 C 1.38820 * 119.99732 * 359.86423 * 17 16 15 20 20 N 1.31621 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47164 * 90.00133 * 21 19 17 23 23 H 1.48502 * 109.46943 * 209.99568 * 21 19 17 24 24 H 1.48493 * 109.47067 * 329.99822 * 21 19 17 25 25 C 1.47577 * 91.05533 * 24.54887 * 16 15 14 26 26 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 27 27 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 28 28 H 1.07996 * 120.00593 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99950 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00030 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47317 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.46995 * 300.00513 * 4 3 2 33 33 H 1.09001 * 109.47029 * 60.00016 * 4 3 2 34 34 H 1.08996 * 109.47420 * 300.00103 * 5 3 2 35 35 H 1.09008 * 109.47080 * 60.00253 * 5 3 2 36 36 H 1.09003 * 109.46848 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46646 * 59.99769 * 6 3 2 38 38 H 1.09001 * 109.47188 * 299.99912 * 6 3 2 39 39 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 40 40 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 41 41 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 42 42 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 43 43 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 44 44 H 1.08994 * 112.94642 * 20.33216 * 14 13 12 45 45 H 1.09005 * 113.77098 * 336.34714 * 15 14 13 46 46 H 1.08995 * 113.77070 * 107.74480 * 15 14 13 47 47 H 0.96993 * 119.99596 * 180.02562 * 20 19 17 48 48 H 1.09000 * 113.77416 * 221.15573 * 25 16 15 49 49 H 1.09003 * 113.76723 * 89.75273 * 25 16 15 50 50 H 1.08994 * 109.50232 * 301.42239 * 26 12 11 51 51 H 1.09000 * 109.49784 * 181.32304 * 26 12 11 52 52 H 1.08994 * 109.58580 * 353.38021 * 27 9 7 53 53 H 1.09006 * 109.57831 * 113.65514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9431 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5452 3.4789 0.3393 9 7 4.5397 2.9828 2.2594 10 6 5.2821 4.2506 2.2728 11 6 5.0248 4.9620 3.6050 12 6 5.3746 4.0131 4.7577 13 8 5.1661 4.6816 6.0033 14 6 6.3138 5.3831 6.4858 15 6 6.9352 4.7601 7.7490 16 7 7.0774 6.1474 8.2388 17 6 7.9046 6.7674 9.1370 18 1 7.8039 7.8266 9.3218 19 6 8.8724 6.0342 9.8099 20 7 8.9947 4.7432 9.5850 21 14 10.0003 6.8798 11.0356 22 1 9.3842 6.8374 12.3861 23 1 11.3101 6.1808 11.0670 24 1 10.2031 8.2933 10.6282 25 6 5.9723 6.5964 7.3698 26 6 4.4824 2.7716 4.6898 27 6 4.7344 2.0383 3.3680 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6141 3.4120 -0.0011 32 1 0.4428 2.4101 -0.8908 33 1 0.4422 2.4105 0.8891 34 1 3.6514 0.5578 -1.2492 35 1 2.3163 1.3284 -2.1392 36 1 3.4876 2.3304 -1.2494 37 1 3.6514 0.5578 1.2492 38 1 2.3164 1.3285 2.1393 39 1 6.3483 4.0509 2.1651 40 1 4.9436 4.8809 1.4506 41 1 5.6443 5.8568 3.6651 42 1 3.9734 5.2417 3.6709 43 1 6.4196 3.7140 4.6766 44 1 7.0389 5.6015 5.7020 45 1 6.2372 4.1581 8.3310 46 1 7.8851 4.2569 7.5689 47 1 9.6707 4.2309 10.0555 48 1 6.1550 7.5566 6.8874 49 1 4.9909 6.5350 7.8401 50 1 3.4361 3.0720 4.7457 51 1 4.7163 2.1094 5.5233 52 1 4.0328 1.2100 3.2698 53 1 5.7553 1.6567 3.3478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105709360.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:52 Heat of formation + Delta-G solvation = -23.993654 kcal Electronic energy + Delta-G solvation = -29690.393696 eV Core-core repulsion = 25756.847046 eV Total energy + Delta-G solvation = -3933.546650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55465 -40.32300 -39.06560 -37.81898 -36.68729 -34.17014 -33.03882 -32.33051 -31.78405 -29.48609 -28.94526 -28.16558 -26.62135 -25.84664 -24.79403 -24.27531 -23.24848 -21.81820 -21.21253 -19.91114 -19.00609 -18.82505 -18.39564 -17.76134 -17.00440 -16.79182 -16.59273 -16.35244 -15.92787 -15.63972 -15.39729 -15.29958 -15.12956 -14.74167 -14.62448 -14.46131 -14.18593 -13.75276 -13.59794 -13.42308 -13.23973 -13.19667 -12.97379 -12.84645 -12.79595 -12.70012 -12.62228 -12.33275 -12.22867 -12.18534 -11.99213 -11.92049 -11.78427 -11.74429 -11.49265 -11.42482 -11.38926 -10.88371 -10.43916 -10.20520 -10.20121 -9.64472 -8.98262 -7.93517 -5.28592 1.44957 1.45503 1.47943 1.56685 1.66535 2.04478 2.41691 2.73892 3.26139 3.43981 3.51857 3.73508 3.77231 3.86427 3.93805 4.00138 4.05332 4.14043 4.15181 4.19553 4.33790 4.40394 4.43561 4.49521 4.53675 4.65048 4.68527 4.75878 4.76874 4.81113 4.83340 4.86528 4.89380 4.94021 4.97948 5.02024 5.09428 5.14621 5.17787 5.20337 5.22717 5.23973 5.37135 5.46431 5.47873 5.51705 5.63946 5.81535 5.87708 5.99117 6.45135 6.45891 6.88307 7.24433 7.56200 8.51260 9.23641 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033054 B = 0.001877 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.897695 B =14915.747073 C =15096.117279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.021 4.021 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.125 4.125 7 C 0.513 3.487 8 O -0.566 6.566 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.146 4.146 12 C 0.082 3.918 13 O -0.382 6.382 14 C 0.072 3.928 15 C 0.146 3.854 16 N -0.639 5.639 17 C -0.237 4.237 18 H 0.087 0.913 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.984 3.016 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.119 3.881 26 C -0.127 4.127 27 C 0.112 3.888 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.015 0.985 46 H 0.046 0.954 47 H 0.250 0.750 48 H 0.065 0.935 49 H 0.044 0.956 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.118 0.882 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.787 -11.500 -21.047 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.166 4.166 3 C -0.021 4.021 4 C -0.209 4.209 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.303 3.697 8 O -0.446 6.446 9 N -0.347 5.347 10 C -0.006 4.006 11 C -0.184 4.184 12 C 0.024 3.976 13 O -0.300 6.300 14 C 0.013 3.987 15 C 0.020 3.980 16 N -0.367 5.367 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.811 3.189 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.006 4.006 26 C -0.166 4.166 27 C -0.010 4.010 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.106 0.894 52 H 0.136 0.864 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.803 -11.059 -21.220 27.625 hybrid contribution 0.830 0.510 1.039 1.424 sum -12.973 -10.550 -20.181 26.209 Atomic orbital electron populations 1.24150 0.96308 1.02542 1.00458 1.22949 0.95975 0.97334 1.00331 1.19375 0.94770 0.93558 0.94415 1.22112 0.98589 0.99012 1.01141 1.21983 0.99332 1.02648 0.96269 1.21801 0.99481 0.94805 1.00350 1.21148 0.78568 0.89212 0.80731 1.90571 1.65380 1.52000 1.36613 1.48322 1.43569 1.19688 1.23119 1.21473 0.96542 0.85264 0.97276 1.22400 1.02588 0.99122 0.94304 1.22345 0.99548 0.92594 0.83115 1.87931 1.35944 1.67975 1.38155 1.24364 0.87364 0.92697 0.94303 1.22667 0.96786 0.87761 0.90752 1.46070 1.35795 1.06507 1.48374 1.19422 1.08838 0.93099 1.15171 0.89554 1.25709 1.01395 0.96548 1.02418 1.70014 1.37002 1.06981 1.46181 0.85006 0.77543 0.77916 0.78420 1.21379 1.21783 1.19053 1.22865 0.91265 0.96530 0.89921 1.21968 1.00216 0.95783 0.98589 1.21947 1.04231 0.91610 0.83244 0.88310 0.87468 0.85994 0.91973 0.92804 0.92762 0.92275 0.93211 0.91790 0.86446 0.87336 0.90340 0.89855 0.90512 0.91887 0.91787 0.88788 0.96719 0.93532 0.94085 0.91722 0.93821 0.91196 0.89350 0.86357 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 13.70 67.78 0.93 -1.30 16 2 C -0.15 -1.69 8.76 25.65 0.22 -1.46 16 3 C -0.02 -0.30 0.74 -52.93 -0.04 -0.34 16 4 C -0.15 -2.61 6.83 71.98 0.49 -2.12 16 5 C -0.15 -2.37 8.16 71.98 0.59 -1.78 16 6 C -0.12 -1.54 3.10 29.85 0.09 -1.44 16 7 C 0.51 9.61 7.11 87.66 0.62 10.23 16 8 O -0.57 -14.34 10.76 -3.03 -0.03 -14.37 16 9 N -0.61 -10.60 2.97 -818.81 -2.43 -13.03 16 10 C 0.12 2.27 6.42 86.36 0.55 2.83 16 11 C -0.15 -3.19 5.72 30.78 0.18 -3.01 16 12 C 0.08 1.97 2.45 30.72 0.08 2.05 16 13 O -0.38 -12.56 10.01 -148.98 -1.49 -14.05 16 14 C 0.07 2.71 4.29 31.26 0.13 2.84 16 15 C 0.15 7.13 7.36 86.44 0.64 7.77 16 16 N -0.64 -33.71 3.70 -720.79 -2.67 -36.38 16 17 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 18 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 20 N -0.95 -57.71 11.39 21.65 0.25 -57.46 16 21 Si 0.98 45.67 29.55 68.60 2.03 47.69 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 C 0.12 4.98 8.77 86.49 0.76 5.74 16 26 C -0.13 -2.35 5.73 30.69 0.18 -2.17 16 27 C 0.11 1.43 6.34 86.38 0.55 1.98 16 28 H 0.10 1.20 5.69 -2.91 -0.02 1.18 16 29 H 0.11 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.06 1.40 5.51 -2.39 -0.01 1.39 16 32 H 0.05 0.89 7.50 -2.39 -0.02 0.87 16 33 H 0.05 0.85 7.49 -2.39 -0.02 0.84 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 1.37 5.51 -2.39 -0.01 1.36 16 37 H 0.12 0.91 7.94 -2.39 -0.02 0.90 16 38 H 0.11 1.07 7.69 -2.39 -0.02 1.05 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.83 7.00 -2.39 -0.02 1.81 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.54 7.74 -2.39 -0.02 1.52 16 44 H 0.09 3.30 7.80 -2.39 -0.02 3.29 16 45 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.05 2.49 7.17 -2.39 -0.02 2.47 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.12 0.87 5.93 -2.39 -0.01 0.85 16 53 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -70.89 406.21 3.85 -67.04 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.87 Total: 16.78 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 7.33 Total: 3.78 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.86 Total: -106.87 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.52 Total: -28.42 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.89 3.85 -67.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105709360.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.050 kcal (2) G-P(sol) polarization free energy of solvation -70.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds