Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47353 * 2 1 4 4 C 1.50697 * 120.00123 * 273.17925 * 3 2 1 5 5 C 1.32993 * 119.99998 * 93.17800 * 3 2 1 6 6 C 1.47104 * 120.00130 * 351.69572 * 5 3 2 7 7 O 1.21621 * 119.99739 * 353.78717 * 6 5 3 8 8 N 1.34777 * 120.00187 * 173.78741 * 6 5 3 9 9 C 1.47155 * 120.98531 * 173.66637 * 8 6 5 10 10 C 1.53302 * 108.40497 * 230.58438 * 9 8 6 11 11 H 1.08993 * 109.51326 * 67.62158 * 10 9 8 12 12 C 1.53009 * 109.50501 * 187.76212 * 10 9 8 13 13 O 1.42982 * 109.22898 * 307.72653 * 10 9 8 14 14 C 1.42892 * 114.22795 * 62.43264 * 13 10 9 15 15 C 1.52988 * 109.55997 * 57.44065 * 14 13 10 16 16 C 1.53195 * 109.35505 * 59.06988 * 15 14 13 17 17 N 1.46935 * 108.76739 * 54.58290 * 16 15 14 18 18 C 1.36931 * 120.64501 * 126.33697 * 17 16 15 19 19 H 1.08003 * 120.00478 * 319.22843 * 18 17 16 20 20 C 1.38818 * 120.00258 * 139.22684 * 18 17 16 21 21 N 1.31621 * 119.99365 * 348.03795 * 20 18 17 22 22 Si 1.86795 * 120.00245 * 168.03523 * 20 18 17 23 23 H 1.48495 * 109.47074 * 60.00236 * 22 20 18 24 24 H 1.48502 * 109.47045 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47305 * 299.99939 * 22 20 18 26 26 C 1.46927 * 118.71295 * 306.31731 * 17 16 15 27 27 C 1.52990 * 109.56341 * 177.75417 * 14 13 10 28 28 C 1.47151 * 120.98977 * 353.68423 * 8 6 5 29 29 H 1.09002 * 109.47202 * 300.00238 * 1 2 3 30 30 H 1.09002 * 109.46737 * 59.99539 * 1 2 3 31 31 H 1.08996 * 109.47797 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46856 * 240.00080 * 2 1 3 33 33 H 1.08999 * 109.47116 * 120.00117 * 2 1 3 34 34 H 1.09007 * 109.47228 * 269.99687 * 4 3 2 35 35 H 1.09004 * 109.47344 * 29.99849 * 4 3 2 36 36 H 1.09005 * 109.47606 * 150.00255 * 4 3 2 37 37 H 1.07995 * 120.00265 * 171.68844 * 5 3 2 38 38 H 1.08994 * 109.68426 * 350.32173 * 9 8 6 39 39 H 1.08994 * 109.68209 * 110.84831 * 9 8 6 40 40 H 1.08990 * 109.47210 * 60.00383 * 12 10 9 41 41 H 1.09006 * 109.46798 * 180.02562 * 12 10 9 42 42 H 1.09001 * 109.46939 * 299.99931 * 12 10 9 43 43 H 1.09005 * 109.48966 * 179.03589 * 15 14 13 44 44 H 1.09004 * 109.49024 * 299.10453 * 15 14 13 45 45 H 1.08990 * 109.58615 * 294.79607 * 16 15 14 46 46 H 1.08999 * 109.70298 * 174.43198 * 16 15 14 47 47 H 0.97009 * 119.99547 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.57943 * 293.88942 * 26 17 16 49 49 H 1.08995 * 109.58728 * 173.47016 * 26 17 16 50 50 H 1.08996 * 109.49083 * 60.88292 * 27 14 13 51 51 H 1.09002 * 109.48860 * 180.92819 * 27 14 13 52 52 H 1.09000 * 109.67863 * 249.21153 * 28 8 6 53 53 H 1.09000 * 109.67626 * 9.72459 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2153 2.1553 -1.3030 5 6 2.3142 2.0264 1.1500 6 6 1.9659 1.3817 2.4255 7 8 1.3207 0.3508 2.4295 8 7 2.3618 1.9335 3.5897 9 6 1.9110 1.3865 4.8793 10 6 1.3580 2.5381 5.7267 11 1 0.4412 2.9156 5.2740 12 6 1.0611 2.0350 7.1409 13 8 2.3277 3.5871 5.7859 14 6 2.6404 4.1688 4.5187 15 6 1.3625 4.7087 3.8737 16 6 0.7313 5.7560 4.7965 17 7 1.7355 6.7847 5.1006 18 6 1.4658 8.1094 4.8827 19 1 0.9354 8.4132 3.9923 20 6 1.8742 9.0620 5.8062 21 7 2.3053 8.6866 6.9918 22 14 1.8118 10.8763 5.3663 23 1 0.4130 11.2609 5.0490 24 1 2.2972 11.6813 6.5159 25 1 2.6749 11.1292 4.1848 26 6 3.0345 6.3644 5.6435 27 6 3.6406 5.3102 4.7118 28 6 3.2574 3.1009 3.6090 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.2269 1.9904 -1.6742 35 1 1.4955 1.7850 -2.0331 36 1 2.0560 3.2219 -1.1445 37 1 2.7990 2.9915 1.1474 38 1 1.1290 0.6462 4.7108 39 1 2.7514 0.9219 5.3949 40 1 1.9791 1.6598 7.5932 41 1 0.6675 2.8541 7.7428 42 1 0.3248 1.2326 7.0940 43 1 1.6048 5.1674 2.9150 44 1 0.6597 3.8901 3.7183 45 1 0.4049 5.2795 5.7207 46 1 -0.1236 6.2154 4.3004 47 1 2.5903 9.3523 7.6373 48 1 2.8944 5.9372 6.6366 49 1 3.7008 7.2248 5.7043 50 1 4.5577 4.9195 5.1526 51 1 3.8656 5.7637 3.7465 52 1 4.2335 2.8084 3.9960 53 1 3.3664 3.4966 2.5992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111543607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -40.040519 kcal Electronic energy + Delta-G solvation = -31700.341042 eV Core-core repulsion = 27766.098548 eV Total energy + Delta-G solvation = -3934.242494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.73387 -39.13909 -36.52953 -35.83683 -34.66393 -33.43473 -31.62951 -31.01615 -30.13204 -29.66047 -28.60013 -27.10257 -25.99315 -24.11682 -23.68506 -22.62269 -21.68316 -21.14087 -19.83466 -19.00016 -18.04991 -17.42352 -16.89590 -16.05374 -15.65671 -15.31914 -14.96444 -14.87612 -14.72281 -14.19438 -14.03431 -13.88139 -13.50571 -13.38565 -13.32242 -13.07006 -12.98554 -12.94143 -12.61435 -12.42167 -12.24657 -12.07773 -11.87210 -11.73652 -11.53355 -11.43668 -11.32218 -11.19248 -11.01753 -10.83140 -10.77283 -10.64316 -10.36840 -10.23359 -10.02695 -9.95988 -9.58450 -9.32766 -9.29897 -9.21678 -8.45258 -8.27678 -6.43204 -5.76722 -3.34015 1.25937 2.95508 3.23661 3.37496 3.43115 3.43956 3.92331 4.46251 4.49334 4.58673 4.78275 4.87242 5.03964 5.09632 5.14815 5.20700 5.25051 5.27948 5.30988 5.40782 5.43266 5.46018 5.47839 5.57144 5.57440 5.63670 5.65349 5.70851 5.79508 5.81174 5.82149 6.02770 6.05778 6.09503 6.21295 6.24678 6.30552 6.33835 6.35003 6.42625 6.51895 6.54081 6.57169 6.65997 6.81157 7.05956 7.32374 7.42229 7.64841 7.67759 7.83618 8.20305 8.56226 9.26059 9.84482 10.51586 11.29738 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.003415 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.333572 B = 8196.641272 C = 9400.419199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.029 4.029 4 C -0.128 4.128 5 C -0.234 4.234 6 C 0.550 3.450 7 O -0.543 6.543 8 N -0.607 5.607 9 C 0.087 3.913 10 C 0.071 3.929 11 H 0.065 0.935 12 C -0.141 4.141 13 O -0.353 6.353 14 C 0.119 3.881 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.586 5.586 18 C -0.265 4.265 19 H 0.057 0.943 20 C 0.017 3.983 21 N -0.893 5.893 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.184 3.816 27 C -0.126 4.126 28 C 0.082 3.918 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.050 0.950 47 H 0.255 0.745 48 H 0.031 0.969 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.073 0.927 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -16.216 -10.710 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C -0.031 4.031 4 C -0.184 4.184 5 C -0.254 4.254 6 C 0.343 3.657 7 O -0.424 6.424 8 N -0.339 5.339 9 C -0.036 4.036 10 C 0.012 3.988 11 H 0.083 0.917 12 C -0.198 4.198 13 O -0.272 6.272 14 C 0.079 3.921 15 C -0.193 4.193 16 C 0.027 3.973 17 N -0.309 5.309 18 C -0.395 4.395 19 H 0.074 0.926 20 C -0.184 4.184 21 N -0.535 5.535 22 Si 0.729 3.271 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.058 3.942 27 C -0.166 4.166 28 C -0.041 4.041 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.091 0.909 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.224 -16.573 -10.359 19.583 hybrid contribution 0.042 1.057 -0.373 1.121 sum 1.266 -15.516 -10.732 18.909 Atomic orbital electron populations 1.21517 0.94237 1.01506 1.01538 1.21009 0.97139 0.92626 1.03412 1.22565 0.90357 0.95677 0.94457 1.21003 1.02637 1.00314 0.94469 1.22468 1.08349 1.02689 0.91899 1.18524 0.79351 0.83807 0.84065 1.90686 1.41201 1.23479 1.86997 1.48023 1.48633 1.31538 1.05738 1.22333 1.00708 0.97096 0.83478 1.22403 0.92551 0.87379 0.96464 0.91691 1.21685 1.01928 1.01412 0.94806 1.88064 1.59887 1.50302 1.28983 1.21711 0.95720 0.91328 0.83344 1.22540 0.96889 0.99414 1.00452 1.20785 0.91944 0.89562 0.95055 1.43846 1.09664 1.01723 1.75701 1.18978 1.36683 0.82113 1.01742 0.92556 1.25395 1.00263 0.98301 0.94446 1.70007 1.46083 1.32893 1.04535 0.86444 0.78056 0.85262 0.77338 1.20761 1.21612 1.20846 1.20546 0.87007 0.93794 0.92869 1.22193 0.96277 0.95737 1.02403 1.22689 0.93172 0.86160 1.02108 0.91792 0.93758 0.92838 0.92315 0.87979 0.90530 0.90923 0.90902 0.85347 0.88677 0.91142 0.91873 0.91105 0.91376 0.91631 0.92990 0.96179 0.93153 0.93538 0.95117 0.91402 0.92387 0.91223 0.90863 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.46 37.16 0.35 -1.05 16 2 C -0.11 -1.12 5.31 -27.89 -0.15 -1.27 16 3 C -0.03 -0.30 5.36 -101.17 -0.54 -0.84 16 4 C -0.13 -0.98 10.04 36.00 0.36 -0.62 16 5 C -0.23 -2.75 8.93 -37.81 -0.34 -3.08 16 6 C 0.55 7.68 7.48 -12.66 -0.09 7.58 16 7 O -0.54 -8.44 11.21 5.26 0.06 -8.39 16 8 N -0.61 -8.31 2.52 -173.69 -0.44 -8.75 16 9 C 0.09 1.15 5.90 -3.53 -0.02 1.13 16 10 C 0.07 1.02 3.02 -26.57 -0.08 0.94 16 11 H 0.07 1.01 6.29 -51.93 -0.33 0.69 16 12 C -0.14 -1.73 9.57 37.16 0.36 -1.38 16 13 O -0.35 -6.15 8.65 -35.23 -0.30 -6.45 16 14 C 0.12 1.95 0.68 -90.50 -0.06 1.89 16 15 C -0.15 -2.67 4.33 -26.64 -0.12 -2.79 16 16 C 0.15 3.29 6.28 -3.70 -0.02 3.27 16 17 N -0.59 -14.60 2.91 -172.31 -0.50 -15.10 16 18 C -0.27 -7.24 9.44 -15.06 -0.14 -7.38 16 19 H 0.06 1.52 7.86 -52.48 -0.41 1.11 16 20 C 0.02 0.46 4.98 -17.43 -0.09 0.38 16 21 N -0.89 -25.94 11.88 55.49 0.66 -25.28 16 22 Si 0.90 21.42 29.57 -169.99 -5.03 16.39 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.18 4.30 5.02 -3.71 -0.02 4.28 16 27 C -0.13 -2.28 5.10 -26.64 -0.14 -2.42 16 28 C 0.08 1.09 5.22 -3.55 -0.02 1.07 16 29 H 0.06 0.83 6.92 -51.93 -0.36 0.47 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.32 5.56 -51.93 -0.29 1.03 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.13 1.36 5.96 -52.49 -0.31 1.05 16 38 H 0.09 1.26 7.13 -51.93 -0.37 0.89 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.86 6.15 -51.93 -0.32 0.55 16 45 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.03 0.79 7.83 -51.92 -0.41 0.38 16 49 H 0.07 1.75 6.89 -51.93 -0.36 1.39 16 50 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 53 H 0.09 1.10 5.40 -51.93 -0.28 0.82 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -30.77 398.14 -9.61 -40.38 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -9.30 Total: 1.46 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.76 Total: -0.27 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.28 Total: -49.13 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.25 Total: -14.84 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.77 -9.61 -40.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111543607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.344 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds