Wall clock time and date at job start Tue Mar 31 2020 20:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47353 * 2 1 4 4 C 1.50697 * 120.00123 * 273.17925 * 3 2 1 5 5 C 1.32993 * 119.99998 * 93.17800 * 3 2 1 6 6 C 1.47104 * 120.00130 * 351.69572 * 5 3 2 7 7 O 1.21621 * 119.99739 * 353.78717 * 6 5 3 8 8 N 1.34777 * 120.00187 * 173.78741 * 6 5 3 9 9 C 1.47155 * 120.98531 * 173.66637 * 8 6 5 10 10 C 1.53302 * 108.40497 * 230.58438 * 9 8 6 11 11 H 1.08993 * 109.51326 * 67.62158 * 10 9 8 12 12 C 1.53009 * 109.50501 * 187.76212 * 10 9 8 13 13 O 1.42982 * 109.22898 * 307.72653 * 10 9 8 14 14 C 1.42892 * 114.22795 * 62.43264 * 13 10 9 15 15 C 1.52988 * 109.55997 * 57.44065 * 14 13 10 16 16 C 1.53195 * 109.35505 * 59.06988 * 15 14 13 17 17 N 1.46935 * 108.76739 * 54.58290 * 16 15 14 18 18 C 1.36931 * 120.64501 * 126.33697 * 17 16 15 19 19 H 1.08003 * 120.00478 * 319.22843 * 18 17 16 20 20 C 1.38818 * 120.00258 * 139.22684 * 18 17 16 21 21 N 1.31621 * 119.99365 * 348.03795 * 20 18 17 22 22 Si 1.86795 * 120.00245 * 168.03523 * 20 18 17 23 23 H 1.48495 * 109.47074 * 60.00236 * 22 20 18 24 24 H 1.48502 * 109.47045 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47305 * 299.99939 * 22 20 18 26 26 C 1.46927 * 118.71295 * 306.31731 * 17 16 15 27 27 C 1.52990 * 109.56341 * 177.75417 * 14 13 10 28 28 C 1.47151 * 120.98977 * 353.68423 * 8 6 5 29 29 H 1.09002 * 109.47202 * 300.00238 * 1 2 3 30 30 H 1.09002 * 109.46737 * 59.99539 * 1 2 3 31 31 H 1.08996 * 109.47797 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46856 * 240.00080 * 2 1 3 33 33 H 1.08999 * 109.47116 * 120.00117 * 2 1 3 34 34 H 1.09007 * 109.47228 * 269.99687 * 4 3 2 35 35 H 1.09004 * 109.47344 * 29.99849 * 4 3 2 36 36 H 1.09005 * 109.47606 * 150.00255 * 4 3 2 37 37 H 1.07995 * 120.00265 * 171.68844 * 5 3 2 38 38 H 1.08994 * 109.68426 * 350.32173 * 9 8 6 39 39 H 1.08994 * 109.68209 * 110.84831 * 9 8 6 40 40 H 1.08990 * 109.47210 * 60.00383 * 12 10 9 41 41 H 1.09006 * 109.46798 * 180.02562 * 12 10 9 42 42 H 1.09001 * 109.46939 * 299.99931 * 12 10 9 43 43 H 1.09005 * 109.48966 * 179.03589 * 15 14 13 44 44 H 1.09004 * 109.49024 * 299.10453 * 15 14 13 45 45 H 1.08990 * 109.58615 * 294.79607 * 16 15 14 46 46 H 1.08999 * 109.70298 * 174.43198 * 16 15 14 47 47 H 0.97009 * 119.99547 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.57943 * 293.88942 * 26 17 16 49 49 H 1.08995 * 109.58728 * 173.47016 * 26 17 16 50 50 H 1.08996 * 109.49083 * 60.88292 * 27 14 13 51 51 H 1.09002 * 109.48860 * 180.92819 * 27 14 13 52 52 H 1.09000 * 109.67863 * 249.21153 * 28 8 6 53 53 H 1.09000 * 109.67626 * 9.72459 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2153 2.1553 -1.3030 5 6 2.3142 2.0264 1.1500 6 6 1.9659 1.3817 2.4255 7 8 1.3207 0.3508 2.4295 8 7 2.3618 1.9335 3.5897 9 6 1.9110 1.3865 4.8793 10 6 1.3580 2.5381 5.7267 11 1 0.4412 2.9156 5.2740 12 6 1.0611 2.0350 7.1409 13 8 2.3277 3.5871 5.7859 14 6 2.6404 4.1688 4.5187 15 6 1.3625 4.7087 3.8737 16 6 0.7313 5.7560 4.7965 17 7 1.7355 6.7847 5.1006 18 6 1.4658 8.1094 4.8827 19 1 0.9354 8.4132 3.9923 20 6 1.8742 9.0620 5.8062 21 7 2.3053 8.6866 6.9918 22 14 1.8118 10.8763 5.3663 23 1 0.4130 11.2609 5.0490 24 1 2.2972 11.6813 6.5159 25 1 2.6749 11.1292 4.1848 26 6 3.0345 6.3644 5.6435 27 6 3.6406 5.3102 4.7118 28 6 3.2574 3.1009 3.6090 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.2269 1.9904 -1.6742 35 1 1.4955 1.7850 -2.0331 36 1 2.0560 3.2219 -1.1445 37 1 2.7990 2.9915 1.1474 38 1 1.1290 0.6462 4.7108 39 1 2.7514 0.9219 5.3949 40 1 1.9791 1.6598 7.5932 41 1 0.6675 2.8541 7.7428 42 1 0.3248 1.2326 7.0940 43 1 1.6048 5.1674 2.9150 44 1 0.6597 3.8901 3.7183 45 1 0.4049 5.2795 5.7207 46 1 -0.1236 6.2154 4.3004 47 1 2.5903 9.3523 7.6373 48 1 2.8944 5.9372 6.6366 49 1 3.7008 7.2248 5.7043 50 1 4.5577 4.9195 5.1526 51 1 3.8656 5.7637 3.7465 52 1 4.2335 2.8084 3.9960 53 1 3.3664 3.4966 2.5992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111543607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:14 Heat of formation + Delta-G solvation = -56.549815 kcal Electronic energy + Delta-G solvation = -31701.056939 eV Core-core repulsion = 27766.098548 eV Total energy + Delta-G solvation = -3934.958391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89797 -40.30479 -37.97828 -36.88251 -35.78469 -35.01192 -33.33265 -31.92672 -31.65357 -31.22096 -29.39696 -28.53503 -27.04715 -25.82901 -24.55546 -24.17540 -23.15670 -22.42881 -21.06331 -20.37573 -19.03664 -18.81428 -18.36330 -17.18596 -16.95280 -16.76271 -16.47026 -16.09560 -15.81582 -15.68215 -15.21762 -15.09337 -14.90681 -14.85453 -14.64598 -14.25552 -14.08747 -13.79433 -13.65920 -13.38797 -13.29566 -13.12598 -13.07033 -13.00083 -12.89079 -12.85680 -12.74036 -12.61801 -12.58925 -12.25109 -12.10060 -12.00746 -11.86674 -11.77618 -11.63767 -11.37953 -11.18895 -10.76061 -10.54952 -10.37698 -10.07121 -9.39786 -8.47698 -7.85075 -5.47701 0.39858 1.47489 1.49045 1.56280 1.92662 2.25803 2.50540 2.71269 3.28411 3.53647 3.59599 3.75028 3.78343 3.85086 3.90481 3.99240 4.07955 4.13423 4.25356 4.34564 4.41053 4.47207 4.52118 4.55764 4.61078 4.67006 4.67896 4.70846 4.73915 4.77138 4.84429 4.85113 4.94458 4.96599 5.01916 5.05129 5.08660 5.09922 5.14356 5.22400 5.27166 5.33495 5.37417 5.39843 5.47381 5.55901 5.67494 5.69697 5.76846 6.39345 6.40511 6.46560 7.17831 7.19301 7.84221 8.46127 9.18159 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.003415 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.333572 B = 8196.641272 C = 9400.419199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.016 4.016 4 C -0.127 4.127 5 C -0.255 4.255 6 C 0.544 3.456 7 O -0.565 6.565 8 N -0.611 5.611 9 C 0.093 3.907 10 C 0.070 3.930 11 H 0.049 0.951 12 C -0.136 4.136 13 O -0.378 6.378 14 C 0.120 3.880 15 C -0.137 4.137 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.277 4.277 19 H 0.058 0.942 20 C -0.036 4.036 21 N -0.929 5.929 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.194 3.806 27 C -0.115 4.115 28 C 0.092 3.908 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.000 1.000 46 H 0.044 0.956 47 H 0.251 0.749 48 H -0.005 1.005 49 H 0.036 0.964 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.087 0.913 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -17.069 -13.467 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C -0.018 4.018 4 C -0.183 4.183 5 C -0.276 4.276 6 C 0.338 3.662 7 O -0.447 6.447 8 N -0.343 5.343 9 C -0.030 4.030 10 C 0.012 3.988 11 H 0.067 0.933 12 C -0.194 4.194 13 O -0.298 6.298 14 C 0.080 3.920 15 C -0.176 4.176 16 C 0.027 3.973 17 N -0.326 5.326 18 C -0.407 4.407 19 H 0.076 0.924 20 C -0.233 4.233 21 N -0.572 5.572 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.069 3.931 27 C -0.154 4.154 28 C -0.031 4.031 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.018 0.982 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.013 0.987 49 H 0.055 0.945 50 H 0.095 0.905 51 H 0.102 0.898 52 H 0.105 0.895 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.897 -17.446 -13.139 21.922 hybrid contribution -0.260 1.252 0.496 1.372 sum 1.637 -16.194 -12.643 20.610 Atomic orbital electron populations 1.21468 0.94340 1.01690 1.00940 1.20993 0.97000 0.93065 1.03326 1.22876 0.88168 0.95345 0.95397 1.21076 1.04028 1.00138 0.93045 1.22497 1.10379 1.03536 0.91160 1.18950 0.78884 0.83608 0.84726 1.90686 1.42184 1.24539 1.87335 1.48082 1.48773 1.31557 1.05844 1.22247 1.01018 0.96322 0.83385 1.22510 0.91348 0.87143 0.97829 0.93285 1.21687 1.02931 1.01416 0.93334 1.88043 1.60643 1.51318 1.29771 1.21659 0.94730 0.91886 0.83759 1.22328 0.97492 0.98184 0.99591 1.20811 0.91607 0.89771 0.95064 1.44094 1.10930 1.01794 1.75809 1.19317 1.36195 0.83486 1.01702 0.92418 1.26165 1.00313 1.02550 0.94272 1.70174 1.47476 1.33982 1.05600 0.85379 0.78244 0.79937 0.77039 1.20135 1.22016 1.19720 1.20279 0.86320 0.93874 0.92677 1.22005 0.97077 0.94743 1.01618 1.22574 0.93106 0.85022 1.02350 0.94451 0.92135 0.92377 0.90106 0.90330 0.88768 0.89714 0.90522 0.84008 0.88709 0.90134 0.91088 0.92965 0.88878 0.90734 0.92097 0.98171 0.93751 0.94009 0.98701 0.94526 0.90474 0.89829 0.89520 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.46 71.98 0.68 -1.84 16 2 C -0.11 -2.06 5.31 29.85 0.16 -1.91 16 3 C -0.02 -0.29 5.36 -17.62 -0.09 -0.38 16 4 C -0.13 -1.47 10.04 71.23 0.72 -0.75 16 5 C -0.26 -5.38 8.93 23.43 0.21 -5.17 16 6 C 0.54 14.35 7.48 86.57 0.65 15.00 16 7 O -0.57 -17.17 11.21 -4.10 -0.05 -17.21 16 8 N -0.61 -15.63 2.52 -821.68 -2.07 -17.70 16 9 C 0.09 2.35 5.90 86.36 0.51 2.86 16 10 C 0.07 2.01 3.02 30.70 0.09 2.10 16 11 H 0.05 1.55 6.29 -2.39 -0.02 1.53 16 12 C -0.14 -3.32 9.57 71.99 0.69 -2.63 16 13 O -0.38 -13.12 8.65 -148.98 -1.29 -14.41 16 14 C 0.12 3.79 0.68 -10.72 -0.01 3.78 16 15 C -0.14 -4.65 4.33 30.66 0.13 -4.52 16 16 C 0.15 6.73 6.28 86.36 0.54 7.27 16 17 N -0.60 -30.71 2.91 -699.08 -2.04 -32.75 16 18 C -0.28 -15.34 9.44 84.04 0.79 -14.55 16 19 H 0.06 3.13 7.86 -2.91 -0.02 3.11 16 20 C -0.04 -2.00 4.98 84.86 0.42 -1.58 16 21 N -0.93 -55.76 11.88 21.65 0.26 -55.51 16 22 Si 0.97 44.53 29.57 68.60 2.03 46.55 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.19 9.37 5.02 86.36 0.43 9.80 16 27 C -0.12 -4.05 5.10 30.65 0.16 -3.89 16 28 C 0.09 2.23 5.22 86.34 0.45 2.68 16 29 H 0.04 0.94 6.92 -2.39 -0.02 0.92 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 1.94 5.56 -2.39 -0.01 1.93 16 34 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 0.81 8.12 -2.38 -0.02 0.79 16 36 H 0.08 0.87 8.07 -2.38 -0.02 0.86 16 37 H 0.14 2.53 5.96 -2.91 -0.02 2.52 16 38 H 0.09 2.42 7.13 -2.39 -0.02 2.40 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.06 1.98 6.15 -2.38 -0.01 1.96 16 45 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 46 H 0.04 1.95 7.93 -2.39 -0.02 1.93 16 47 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 48 H -0.01 -0.28 7.83 -2.38 -0.02 -0.30 16 49 H 0.04 1.95 6.89 -2.39 -0.02 1.94 16 50 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 52 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.11 2.29 5.40 -2.39 -0.01 2.28 16 Total: -1.00 -69.09 398.14 4.25 -64.84 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.88 Total: 19.90 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.53 Total: 6.28 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.85 Total: -105.95 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.33 Total: -31.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.09 4.25 -64.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111543607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.287 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds