Wall clock time and date at job start Tue Mar 31 2020 19:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 C 1.52994 * 109.47661 * 240.00190 * 2 1 3 5 5 C 1.53005 * 109.47491 * 119.99650 * 2 1 3 6 6 H 1.09003 * 109.52429 * 299.92763 * 5 2 1 7 7 C 1.53036 * 109.49856 * 179.84326 * 5 2 1 8 8 C 1.53045 * 109.53421 * 178.68570 * 7 5 2 9 9 C 1.52764 * 109.38398 * 61.24325 * 8 7 5 10 10 N 1.46930 * 109.00468 * 305.58495 * 9 8 7 11 11 C 1.34775 * 120.63036 * 233.58999 * 10 9 8 12 12 O 1.21345 * 120.00376 * 184.75708 * 11 10 9 13 13 C 1.49453 * 119.99817 * 4.74613 * 11 10 9 14 14 O 1.21344 * 120.00427 * 274.66299 * 13 11 10 15 15 N 1.34781 * 119.99749 * 94.66596 * 13 11 10 16 16 C 1.46500 * 119.99993 * 185.01371 * 15 13 11 17 17 C 1.53005 * 109.47017 * 174.84845 * 16 15 13 18 18 C 1.50695 * 115.54971 * 65.11252 * 17 16 15 19 19 H 1.08007 * 120.00266 * 264.80181 * 18 17 16 20 20 C 1.37872 * 120.00223 * 84.80211 * 18 17 16 21 21 N 1.31518 * 120.00070 * 4.91673 * 20 18 17 22 22 Si 1.86803 * 120.00288 * 184.90799 * 20 18 17 23 23 H 1.48506 * 109.46848 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46963 * 120.00259 * 22 20 18 25 25 H 1.48495 * 109.47470 * 240.00214 * 22 20 18 26 26 C 1.53002 * 117.49511 * 279.44126 * 17 16 15 27 27 C 1.52990 * 117.49567 * 210.78273 * 17 16 15 28 28 C 1.46920 * 118.73803 * 53.30991 * 10 9 8 29 29 H 1.08993 * 109.46969 * 299.99507 * 1 2 3 30 30 H 1.08995 * 109.46965 * 60.00098 * 1 2 3 31 31 H 1.09001 * 109.46396 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47304 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47201 * 300.00587 * 3 2 1 34 34 H 1.09003 * 109.46860 * 59.99639 * 3 2 1 35 35 H 1.09008 * 109.46944 * 299.99761 * 4 2 1 36 36 H 1.09003 * 109.46988 * 59.99220 * 4 2 1 37 37 H 1.08995 * 109.47735 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.45733 * 298.70464 * 7 5 2 39 39 H 1.08990 * 109.46233 * 58.66361 * 7 5 2 40 40 H 1.09003 * 109.49625 * 181.31102 * 8 7 5 41 41 H 1.08992 * 109.50116 * 301.37713 * 8 7 5 42 42 H 1.09002 * 109.50735 * 185.70570 * 9 8 7 43 43 H 1.08991 * 109.43370 * 65.42015 * 9 8 7 44 44 H 0.97003 * 119.99953 * 4.74128 * 15 13 11 45 45 H 1.08994 * 109.47042 * 294.84288 * 16 15 13 46 46 H 1.08995 * 109.47110 * 54.84474 * 16 15 13 47 47 H 0.96998 * 120.00129 * 185.00031 * 21 20 18 48 48 H 1.08999 * 117.50103 * 0.02562 * 26 17 16 49 49 H 1.09007 * 117.49496 * 145.02021 * 26 17 16 50 50 H 1.09008 * 117.49756 * 214.97471 * 27 17 16 51 51 H 1.08995 * 117.50380 * 359.97438 * 27 17 16 52 52 H 1.08995 * 109.58719 * 66.43243 * 28 10 9 53 53 H 1.09001 * 109.58525 * 186.71441 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2493 6 1 1.6783 -0.2072 2.1399 7 6 3.5705 -0.7249 1.2479 8 6 4.0817 -1.4173 2.5134 9 6 3.5943 -2.8650 2.5314 10 7 2.1325 -2.8796 2.3838 11 6 1.3589 -3.5308 3.2747 12 8 0.1613 -3.6089 3.0955 13 6 1.9760 -4.1569 4.4833 14 8 2.4412 -5.2756 4.4166 15 7 2.0158 -3.4789 5.6475 16 6 2.7169 -4.0462 6.8020 17 6 2.7223 -3.0295 7.9454 18 6 1.3714 -2.6925 8.5218 19 1 0.8340 -1.8252 8.1673 20 6 0.8212 -3.4911 9.5018 21 7 1.5150 -4.4901 10.0023 22 14 -0.9095 -3.1543 10.1189 23 1 -1.4721 -1.9831 9.3998 24 1 -1.7635 -4.3437 9.8713 25 1 -0.8688 -2.8687 11.5756 26 6 3.7666 -1.9125 7.8926 27 6 3.9141 -3.0515 8.9045 28 6 1.5299 -2.1656 1.2499 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 3.9314 -1.2605 0.3698 39 1 3.9361 0.3015 1.2226 40 1 5.1715 -1.3990 2.5231 41 1 3.7013 -0.8964 3.3920 42 1 3.8707 -3.3303 3.4776 43 1 4.0504 -3.4114 1.7060 44 1 1.5836 -2.6134 5.7198 45 1 2.2083 -4.9542 7.1257 46 1 3.7432 -4.2844 6.5227 47 1 1.1034 -5.0958 10.6384 48 1 4.4494 -1.9017 7.0430 49 1 3.4765 -0.9339 8.2751 50 1 3.7211 -2.8217 9.9525 51 1 4.6941 -3.7905 8.7212 52 1 1.8142 -2.6539 0.3178 53 1 0.4445 -2.1719 1.3494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117684959.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:50 Heat of formation + Delta-G solvation = -83.301740 kcal Electronic energy + Delta-G solvation = -30842.187465 eV Core-core repulsion = 26906.069023 eV Total energy + Delta-G solvation = -3936.118442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06830 -40.52091 -39.34527 -38.43351 -37.12322 -35.20302 -33.97866 -33.48557 -31.33428 -28.98185 -28.41096 -28.14560 -27.49649 -26.38261 -24.87338 -23.74362 -22.89931 -22.00912 -21.40480 -20.41002 -19.35902 -19.02753 -18.19513 -17.97410 -17.31438 -16.70243 -16.27808 -16.18898 -15.95698 -15.65806 -15.53758 -15.39963 -15.23693 -14.88568 -14.59932 -14.50323 -14.28428 -14.00995 -13.91078 -13.77117 -13.49892 -12.99148 -12.97186 -12.87399 -12.76803 -12.70531 -12.58947 -12.53286 -12.37155 -12.03572 -12.00604 -11.98958 -11.69027 -11.44706 -11.40172 -11.22247 -11.02678 -11.01499 -10.74337 -10.44902 -10.19321 -9.94725 -9.83342 -8.13989 -6.25858 0.93581 1.04413 1.37722 1.42899 1.49451 1.50743 2.39398 2.43990 3.15088 3.28499 3.56572 3.63497 3.75410 3.81215 4.00347 4.04453 4.18145 4.20640 4.26923 4.37538 4.49438 4.51974 4.55377 4.62407 4.68219 4.72493 4.77265 4.81337 4.86519 4.89171 4.91802 4.99596 5.00691 5.04150 5.11909 5.13844 5.16726 5.22481 5.27000 5.27920 5.30525 5.32706 5.41246 5.49496 5.55271 5.59424 5.63369 5.70435 5.75288 5.95168 6.32299 6.34559 6.61795 6.81328 6.87210 7.44280 8.93670 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.003015 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.709766 B = 9285.519610 C = 9572.758311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.085 4.085 6 H 0.063 0.937 7 C -0.113 4.113 8 C -0.130 4.130 9 C 0.098 3.902 10 N -0.582 5.582 11 C 0.517 3.483 12 O -0.552 6.552 13 C 0.509 3.491 14 O -0.561 6.561 15 N -0.673 5.673 16 C 0.176 3.824 17 C -0.003 4.003 18 C -0.505 4.505 19 H 0.059 0.941 20 C 0.028 3.972 21 N -0.903 5.903 22 Si 0.940 3.060 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.281 1.281 26 C -0.172 4.172 27 C -0.149 4.149 28 C 0.108 3.892 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.412 0.588 45 H 0.031 0.969 46 H 0.059 0.941 47 H 0.259 0.741 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.091 0.909 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 12.420 -22.491 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.104 4.104 6 H 0.081 0.919 7 C -0.150 4.150 8 C -0.168 4.168 9 C -0.023 4.023 10 N -0.316 5.316 11 C 0.300 3.700 12 O -0.429 6.429 13 C 0.290 3.710 14 O -0.440 6.440 15 N -0.323 5.323 16 C 0.053 3.947 17 C -0.003 4.003 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.209 4.209 27 C -0.187 4.187 28 C -0.013 4.013 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.248 0.752 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.081 0.919 51 H 0.093 0.907 52 H 0.109 0.891 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.604 11.489 -22.435 26.056 hybrid contribution -1.557 -0.252 1.153 1.954 sum 5.047 11.237 -21.282 24.590 Atomic orbital electron populations 1.21975 0.95177 1.01574 1.01888 1.20460 0.95024 0.96015 0.94201 1.21899 1.01775 0.94235 1.01798 1.22010 1.01904 0.99991 0.96419 1.21514 0.97029 0.93243 0.98662 0.91891 1.21714 0.93385 1.02184 0.97720 1.21863 1.02466 0.93148 0.99357 1.21995 0.77394 0.99771 1.03154 1.48195 1.08257 1.49300 1.25810 1.20262 0.86696 0.78744 0.84330 1.90753 1.15505 1.59604 1.77045 1.20333 0.79429 0.86209 0.85008 1.90751 1.48314 1.19391 1.85526 1.45927 1.53488 1.22920 1.10004 1.20805 0.93996 0.96019 0.83873 1.19015 0.90700 0.95728 0.94889 1.20708 1.02452 1.11478 1.19664 0.92270 1.25614 1.00267 0.95590 0.95829 1.70101 1.36507 1.16895 1.30521 0.85784 0.81340 0.78069 0.78144 1.18919 1.21577 1.20730 1.23016 1.02895 0.93828 1.01198 1.22395 1.00184 1.00544 0.95554 1.22106 0.98965 0.92608 0.87578 0.93392 0.91672 0.93232 0.91237 0.92070 0.93243 0.92823 0.92072 0.91139 0.89932 0.89517 0.88037 0.92054 0.91382 0.88722 0.75227 0.95084 0.92310 0.93207 0.88536 0.89922 0.91884 0.90686 0.89129 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.13 71.98 0.59 -1.55 16 2 C -0.06 -0.67 0.57 -52.18 -0.03 -0.70 16 3 C -0.14 -1.41 8.13 71.98 0.59 -0.83 16 4 C -0.15 -1.43 7.77 71.98 0.56 -0.87 16 5 C -0.09 -1.27 1.70 -10.72 -0.02 -1.29 16 6 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 7 C -0.11 -1.25 4.46 30.62 0.14 -1.12 16 8 C -0.13 -1.82 6.06 30.53 0.19 -1.64 16 9 C 0.10 1.94 6.33 86.22 0.55 2.48 16 10 N -0.58 -14.64 2.98 -821.33 -2.45 -17.08 16 11 C 0.52 18.04 7.54 87.27 0.66 18.70 16 12 O -0.55 -22.54 16.53 -3.23 -0.05 -22.59 16 13 C 0.51 19.91 5.61 87.27 0.49 20.40 16 14 O -0.56 -25.17 17.09 -3.23 -0.06 -25.23 16 15 N -0.67 -26.08 5.48 -464.41 -2.54 -28.62 16 16 C 0.18 7.70 5.51 86.38 0.48 8.17 16 17 C 0.00 -0.12 1.47 -52.93 -0.08 -0.19 16 18 C -0.51 -25.77 8.59 25.60 0.22 -25.55 16 19 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16 20 C 0.03 1.49 5.43 84.65 0.46 1.95 16 21 N -0.90 -50.69 12.66 21.45 0.27 -50.42 16 22 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.17 -6.38 9.96 30.62 0.30 -6.08 16 27 C -0.15 -6.45 9.15 30.62 0.28 -6.17 16 28 C 0.11 2.17 4.96 86.36 0.43 2.60 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.80 6.56 -2.39 -0.02 0.79 16 32 H 0.07 0.57 6.40 -2.39 -0.02 0.55 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.58 6.32 -2.38 -0.02 0.57 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 0.55 6.46 -2.39 -0.02 0.53 16 38 H 0.08 0.73 6.50 -2.39 -0.02 0.72 16 39 H 0.09 0.77 6.36 -2.39 -0.02 0.75 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.63 6.30 -2.39 -0.02 1.62 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.41 15.04 8.33 -92.71 -0.77 14.27 16 45 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 47 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 48 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 49 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 50 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 51 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 52 H 0.09 1.52 6.18 -2.39 -0.01 1.51 16 53 H 0.08 1.88 5.65 -2.39 -0.01 1.87 16 Total: -1.00 -66.24 410.24 3.11 -63.12 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.13 Total: 27.33 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.79 Total: 8.32 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.72 Total: -96.13 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.11 Total: -47.82 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.24 3.11 -63.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117684959.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.180 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds