Wall clock time and date at job start Tue Mar 31 2020 21:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 C 1.53003 * 109.47351 * 120.00366 * 2 1 3 5 5 H 1.08998 * 109.69978 * 53.41973 * 4 2 1 6 6 C 1.53192 * 109.58294 * 293.06786 * 4 2 1 7 7 C 1.53039 * 109.31115 * 185.57690 * 6 4 2 8 8 C 1.53038 * 109.52889 * 61.36883 * 7 6 4 9 9 C 1.53192 * 109.31530 * 298.61808 * 8 7 6 10 10 N 1.46922 * 109.58942 * 173.77750 * 4 2 1 11 11 C 1.34779 * 120.62889 * 353.41629 * 10 4 2 12 12 O 1.21350 * 119.99865 * 3.14424 * 11 10 4 13 13 C 1.49452 * 119.99947 * 183.14082 * 11 10 4 14 14 O 1.21343 * 120.00313 * 272.59595 * 13 11 10 15 15 N 1.34776 * 119.99676 * 92.59604 * 13 11 10 16 16 C 1.46930 * 120.63050 * 354.42355 * 15 13 11 17 17 C 1.53189 * 108.77758 * 126.37128 * 16 15 13 18 18 C 1.53041 * 109.31527 * 54.63106 * 17 16 15 19 19 C 1.53041 * 109.53869 * 298.63780 * 18 17 16 20 20 H 1.09001 * 109.49359 * 301.41397 * 19 18 17 21 21 C 1.50694 * 109.49684 * 181.35000 * 19 18 17 22 22 H 1.07995 * 120.00450 * 359.97438 * 21 19 18 23 23 C 1.37881 * 119.99909 * 180.02562 * 21 19 18 24 24 N 1.31509 * 119.99993 * 0.02562 * 23 21 19 25 25 Si 1.86805 * 120.00013 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46924 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46876 * 120.00112 * 25 23 21 28 28 H 1.48497 * 109.46937 * 239.99892 * 25 23 21 29 29 C 1.46923 * 120.63105 * 174.14348 * 15 13 11 30 30 H 1.09002 * 109.46831 * 305.28031 * 1 2 3 31 31 H 1.08997 * 109.46699 * 65.27891 * 1 2 3 32 32 H 1.09004 * 109.46694 * 185.27858 * 1 2 3 33 33 H 1.08997 * 109.47015 * 240.00267 * 2 1 3 34 34 H 1.08996 * 109.47195 * 166.20513 * 3 2 1 35 35 H 1.08991 * 109.47569 * 286.21284 * 3 2 1 36 36 H 1.09007 * 109.46541 * 46.21186 * 3 2 1 37 37 H 1.09004 * 109.50139 * 65.62661 * 6 4 2 38 38 H 1.09002 * 109.52898 * 305.54128 * 6 4 2 39 39 H 1.09006 * 109.46074 * 181.38217 * 7 6 4 40 40 H 1.08996 * 109.45844 * 301.35503 * 7 6 4 41 41 H 1.09004 * 109.49519 * 58.58127 * 8 7 6 42 42 H 1.08999 * 109.50094 * 178.67431 * 8 7 6 43 43 H 1.08996 * 109.59360 * 294.86636 * 9 8 7 44 44 H 1.08993 * 109.58584 * 174.43358 * 9 8 7 45 45 H 1.09009 * 109.58786 * 246.15375 * 16 15 13 46 46 H 1.08997 * 109.58918 * 6.43809 * 16 15 13 47 47 H 1.09002 * 109.50212 * 174.58610 * 17 16 15 48 48 H 1.09000 * 109.49535 * 294.68014 * 17 16 15 49 49 H 1.08992 * 109.45639 * 58.65778 * 18 17 16 50 50 H 1.08998 * 109.45567 * 178.61731 * 18 17 16 51 51 H 0.97004 * 120.00527 * 180.02562 * 24 23 21 52 52 H 1.08999 * 109.58588 * 353.41380 * 29 15 13 53 53 H 1.09003 * 109.58722 * 113.84441 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5860 -1.7101 1.3137 6 6 1.6781 0.0923 2.4957 7 6 2.3097 -0.5607 3.7273 8 6 3.8329 -0.5656 3.5792 9 6 4.2194 -1.3869 2.3451 10 7 3.5017 -0.8541 1.1791 11 6 4.1713 -0.4936 0.0664 12 8 3.5742 -0.0014 -0.8684 13 6 5.6492 -0.6998 -0.0161 14 8 6.4051 0.1543 0.3981 15 7 6.1424 -1.8345 -0.5505 16 6 5.2443 -2.9286 -0.9442 17 6 5.5254 -3.2961 -2.4045 18 6 7.0133 -3.6143 -2.5691 19 6 7.8433 -2.3786 -2.2135 20 1 7.5553 -1.5489 -2.8591 21 6 9.3064 -2.6826 -2.4076 22 1 9.6142 -3.6596 -2.7499 23 6 10.2523 -1.7138 -2.1472 24 7 9.8776 -0.5247 -1.7289 25 14 12.0661 -2.0909 -2.3871 26 1 12.2225 -3.4901 -2.8593 27 1 12.6358 -1.1611 -3.3951 28 1 12.7817 -1.9214 -1.0970 29 6 7.5879 -1.9986 -0.7561 30 1 -0.3633 0.5936 0.8389 31 1 -0.3632 0.4298 -0.9335 32 1 -0.3633 -1.0234 0.0945 33 1 1.8934 -0.5138 -0.8900 34 1 3.1021 1.4524 0.2450 35 1 1.8907 1.8807 -0.9867 36 1 1.4906 2.0221 0.7419 37 1 0.5946 0.1167 2.6123 38 1 2.0556 1.1093 2.3893 39 1 2.0334 0.0024 4.6188 40 1 1.9505 -1.5856 3.8193 41 1 4.1904 0.4575 3.4621 42 1 4.2834 -1.0094 4.4670 43 1 3.9430 -2.4299 2.4990 44 1 5.2939 -1.3122 2.1783 45 1 5.4238 -3.7956 -0.3083 46 1 4.2082 -2.6067 -0.8392 47 1 4.9340 -4.1692 -2.6804 48 1 5.2593 -2.4578 -3.0483 49 1 7.2841 -4.4365 -1.9068 50 1 7.2114 -3.8999 -3.6021 51 1 10.5430 0.1571 -1.5460 52 1 8.0978 -1.0622 -0.5294 53 1 7.9625 -2.7881 -0.1045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118510105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:41 Heat of formation + Delta-G solvation = -74.817880 kcal Electronic energy + Delta-G solvation = -32100.534468 eV Core-core repulsion = 28164.783915 eV Total energy + Delta-G solvation = -3935.750554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50774 -40.64958 -38.65806 -38.37888 -36.17636 -35.33062 -33.94300 -33.51902 -31.68421 -30.78194 -28.22852 -27.94619 -26.96453 -26.10027 -24.96124 -23.87506 -23.50433 -21.79472 -21.44053 -20.58762 -19.54086 -18.76713 -18.16621 -17.73992 -17.46780 -16.64890 -16.36251 -16.21804 -15.92975 -15.79270 -15.49303 -15.31621 -15.09007 -14.79670 -14.67024 -14.46914 -14.41135 -13.97753 -13.84152 -13.73439 -13.57180 -13.48877 -12.92517 -12.91976 -12.75381 -12.68394 -12.34619 -12.29446 -12.23908 -12.10747 -11.90082 -11.83060 -11.71132 -11.66610 -11.53425 -11.44606 -11.28097 -11.06779 -10.95791 -10.56717 -10.02821 -9.62824 -9.61630 -8.13067 -6.30518 1.06078 1.17614 1.39597 1.41671 1.49303 1.53993 2.35763 2.42846 3.12492 3.18107 3.69394 3.78081 3.90373 3.90913 4.00424 4.06700 4.18230 4.21459 4.24573 4.31988 4.37931 4.50109 4.57347 4.62773 4.65223 4.71125 4.76387 4.77707 4.80062 4.87864 4.90950 5.00915 5.03279 5.08076 5.11065 5.16424 5.17050 5.20724 5.22985 5.27956 5.31999 5.40414 5.42143 5.42858 5.52613 5.56938 5.73659 5.84644 5.93935 6.04616 6.27175 6.34557 6.77200 6.81298 6.91302 7.40389 8.90997 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.003338 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.089852 B = 8386.979654 C = 8819.354321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.118 4.118 4 C 0.147 3.853 5 H 0.106 0.894 6 C -0.133 4.133 7 C -0.112 4.112 8 C -0.132 4.132 9 C 0.099 3.901 10 N -0.581 5.581 11 C 0.519 3.481 12 O -0.519 6.519 13 C 0.495 3.505 14 O -0.570 6.570 15 N -0.587 5.587 16 C 0.107 3.893 17 C -0.127 4.127 18 C -0.102 4.102 19 C 0.035 3.965 20 H -0.020 1.020 21 C -0.532 4.532 22 H 0.067 0.933 23 C 0.009 3.991 24 N -0.919 5.919 25 Si 0.960 3.040 26 H -0.258 1.258 27 H -0.286 1.286 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.054 0.946 51 H 0.260 0.740 52 H 0.076 0.924 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.542 -6.571 11.628 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.175 4.175 4 C 0.046 3.954 5 H 0.124 0.876 6 C -0.171 4.171 7 C -0.149 4.149 8 C -0.171 4.171 9 C -0.023 4.023 10 N -0.316 5.316 11 C 0.301 3.699 12 O -0.396 6.396 13 C 0.278 3.722 14 O -0.449 6.449 15 N -0.319 5.319 16 C -0.015 4.015 17 C -0.165 4.165 18 C -0.140 4.140 19 C 0.016 3.984 20 H -0.002 1.002 21 C -0.570 4.570 22 H 0.085 0.915 23 C -0.191 4.191 24 N -0.557 5.557 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.212 1.212 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.102 0.898 47 H 0.127 0.873 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.095 0.905 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.397 -5.722 11.408 24.914 hybrid contribution 1.870 0.865 -0.569 2.137 sum -19.527 -4.858 10.840 22.856 Atomic orbital electron populations 1.21897 0.93243 1.02716 1.02124 1.21640 0.96098 0.96121 0.97688 1.21846 0.99056 0.96617 1.00017 1.21776 0.76537 1.00716 0.96335 0.87592 1.22104 1.02496 0.98971 0.93509 1.21521 0.93114 1.02557 0.97752 1.21908 0.98325 0.99659 0.97160 1.22028 0.95749 0.99680 0.84807 1.48212 1.08481 1.61573 1.13302 1.19947 0.86320 0.79299 0.84311 1.90838 1.65807 1.43110 1.39826 1.20969 0.89935 0.82528 0.78756 1.90766 1.59831 1.44265 1.50014 1.48622 1.09496 1.15162 1.58635 1.22005 0.92714 0.89666 0.97094 1.21908 0.97306 1.02015 0.95268 1.21505 0.93711 0.97800 1.00992 1.18876 0.94761 0.93466 0.91339 1.00158 1.21522 0.91645 0.98865 1.44966 0.91494 1.25929 1.03794 0.94710 0.94620 1.70092 1.34992 1.04655 1.46004 0.85466 0.79693 0.78686 0.77590 1.18151 1.21179 1.20707 1.21793 0.76663 1.02310 0.98859 0.91505 0.93062 0.91074 0.90153 0.95683 0.94697 0.92819 0.87999 0.92951 0.90218 0.89462 0.93824 0.88494 0.87280 0.92635 0.88104 0.89753 0.87340 0.94060 0.91391 0.92731 0.93125 0.90530 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.84 71.98 0.64 -1.53 16 2 C -0.10 -2.18 2.16 -10.79 -0.02 -2.20 16 3 C -0.12 -3.29 6.72 71.98 0.48 -2.80 16 4 C 0.15 2.73 2.65 44.98 0.12 2.85 16 5 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.13 -1.94 4.69 30.67 0.14 -1.80 16 7 C -0.11 -1.31 5.88 30.62 0.18 -1.13 16 8 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 9 C 0.10 2.10 6.33 86.36 0.55 2.64 16 10 N -0.58 -14.58 2.88 -796.61 -2.29 -16.88 16 11 C 0.52 18.29 4.27 87.27 0.37 18.67 16 12 O -0.52 -20.03 10.63 -3.25 -0.03 -20.06 16 13 C 0.49 21.61 5.51 87.27 0.48 22.09 16 14 O -0.57 -30.40 16.47 -3.23 -0.05 -30.45 16 15 N -0.59 -24.14 2.98 -821.30 -2.45 -26.59 16 16 C 0.11 3.19 6.36 86.36 0.55 3.74 16 17 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 18 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 19 C 0.03 1.77 2.24 -11.61 -0.03 1.74 16 20 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 21 C -0.53 -29.08 8.57 25.60 0.22 -28.86 16 22 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 23 C 0.01 0.49 5.31 84.66 0.45 0.94 16 24 N -0.92 -56.38 11.39 21.45 0.24 -56.14 16 25 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 C 0.13 6.22 5.36 86.22 0.46 6.68 16 30 H 0.07 0.83 6.96 -2.39 -0.02 0.81 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 2.28 5.86 -11.95 -0.07 2.21 16 34 H 0.02 0.86 5.39 -2.39 -0.01 0.85 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.23 6.96 -2.38 -0.02 1.22 16 37 H 0.10 1.01 7.04 -2.38 -0.02 0.99 16 38 H 0.05 1.02 6.34 -2.39 -0.02 1.00 16 39 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.57 6.30 -2.39 -0.02 1.55 16 45 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.08 2.25 6.31 -2.39 -0.02 2.24 16 47 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 52 H 0.08 4.60 5.15 -2.39 -0.01 4.59 16 53 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -76.01 389.99 3.39 -72.62 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.83 Total: 19.89 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.12 Total: 11.41 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.50 Total: -99.60 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.09 Total: -50.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -76.01 3.39 -72.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118510105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.195 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds