Wall clock time and date at job start Tue Mar 31 2020 21:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 C 1.53006 * 109.47071 * 119.99709 * 2 1 3 5 5 H 1.08999 * 109.58559 * 49.88540 * 4 2 1 6 6 C 1.53191 * 109.70424 * 289.52880 * 4 2 1 7 7 C 1.53039 * 109.31313 * 185.51215 * 6 4 2 8 8 C 1.53038 * 109.53986 * 61.35898 * 7 6 4 9 9 C 1.53621 * 109.24647 * 298.51375 * 8 7 6 10 10 N 1.46927 * 109.58473 * 170.16710 * 4 2 1 11 11 C 1.34777 * 120.63300 * 353.51500 * 10 4 2 12 12 O 1.21352 * 119.99701 * 7.20218 * 11 10 4 13 13 C 1.49445 * 120.00060 * 187.19960 * 11 10 4 14 14 O 1.21350 * 120.00196 * 6.54397 * 13 11 10 15 15 N 1.34780 * 119.99885 * 186.82013 * 13 11 10 16 16 C 1.46923 * 120.63091 * 352.38492 * 15 13 11 17 17 C 1.52759 * 109.00655 * 233.58441 * 16 15 13 18 18 C 1.53041 * 109.38278 * 305.58481 * 17 16 15 19 19 C 1.53041 * 109.53787 * 61.24282 * 18 17 16 20 20 H 1.08997 * 109.49824 * 58.58643 * 19 18 17 21 21 C 1.50695 * 109.49859 * 178.68456 * 19 18 17 22 22 H 1.08002 * 120.00180 * 359.83570 * 21 19 18 23 23 C 1.37876 * 120.00063 * 179.83720 * 21 19 18 24 24 N 1.31510 * 120.00045 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 120.00102 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47445 * 89.99656 * 25 23 21 27 27 H 1.48500 * 109.47348 * 209.99802 * 25 23 21 28 28 H 1.48497 * 109.47299 * 330.00066 * 25 23 21 29 29 C 1.46922 * 120.63191 * 172.66015 * 15 13 11 30 30 H 1.09003 * 109.47175 * 305.02419 * 1 2 3 31 31 H 1.08996 * 109.47041 * 65.02819 * 1 2 3 32 32 H 1.08996 * 109.47223 * 185.03285 * 1 2 3 33 33 H 1.08996 * 109.47371 * 239.99990 * 2 1 3 34 34 H 1.09000 * 109.47055 * 182.22574 * 3 2 1 35 35 H 1.08997 * 109.46781 * 302.22556 * 3 2 1 36 36 H 1.09004 * 109.47109 * 62.22271 * 3 2 1 37 37 H 1.09002 * 109.49852 * 305.45661 * 6 4 2 38 38 H 1.08997 * 109.49830 * 65.52045 * 6 4 2 39 39 H 1.08996 * 109.46330 * 181.38892 * 7 6 4 40 40 H 1.09004 * 109.45819 * 301.35324 * 7 6 4 41 41 H 1.08996 * 109.49747 * 58.59553 * 8 7 6 42 42 H 1.09003 * 109.49330 * 178.65431 * 8 7 6 43 43 H 1.08997 * 109.73837 * 295.12238 * 9 8 7 44 44 H 1.08998 * 109.66546 * 174.54647 * 9 8 7 45 45 H 1.09003 * 109.58309 * 353.41470 * 16 15 13 46 46 H 1.08995 * 109.58990 * 113.84008 * 16 15 13 47 47 H 1.09007 * 109.56638 * 185.55208 * 17 16 15 48 48 H 1.08999 * 109.38810 * 65.51431 * 17 16 15 49 49 H 1.08999 * 109.46381 * 301.21908 * 18 17 16 50 50 H 1.08995 * 109.46207 * 181.26050 * 18 17 16 51 51 H 0.97003 * 120.00248 * 180.02562 * 24 23 21 52 52 H 1.09000 * 109.59179 * 246.15774 * 29 15 13 53 53 H 1.09004 * 109.58434 * 6.43805 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5380 -1.6839 1.3460 6 6 1.7576 0.1322 2.4898 7 6 2.3915 -0.5305 3.7150 8 6 3.9073 -0.6174 3.5232 9 6 4.2132 -1.4845 2.2925 10 7 3.4901 -0.9308 1.1395 11 6 4.1437 -0.6262 0.0009 12 8 3.5625 -0.0546 -0.8980 13 6 5.5843 -0.9924 -0.1546 14 8 6.1336 -1.6669 0.6915 15 7 6.2747 -0.5689 -1.2318 16 6 5.5899 0.1095 -2.3407 17 6 5.9270 -0.6076 -3.6467 18 6 7.4472 -0.6904 -3.8029 19 6 8.0380 -1.4942 -2.6423 20 1 7.5992 -2.4919 -2.6302 21 6 9.5311 -1.6026 -2.8142 22 1 10.0111 -1.1465 -3.6674 23 6 10.2847 -2.2842 -1.8822 24 7 9.7004 -2.8392 -0.8429 25 14 12.1355 -2.4193 -2.0956 26 1 12.7963 -1.2713 -1.4243 27 1 12.6123 -3.6884 -1.4897 28 1 12.4692 -2.4055 -3.5425 29 6 7.7256 -0.7821 -1.3223 30 1 -0.3634 0.5898 0.8416 31 1 -0.3633 0.4338 -0.9316 32 1 -0.3633 -1.0237 0.0901 33 1 1.8934 -0.5138 -0.8899 34 1 3.1293 1.4427 -0.0399 35 1 1.6445 1.9677 -0.8694 36 1 1.7096 1.9447 0.9093 37 1 2.1839 1.1259 2.3525 38 1 0.6808 0.2153 2.6367 39 1 2.1711 0.0618 4.6030 40 1 1.9831 -1.5337 3.8373 41 1 4.3133 0.3834 3.3762 42 1 4.3605 -1.0677 4.4064 43 1 3.8847 -2.5080 2.4726 44 1 5.2845 -1.4722 2.0922 45 1 4.5126 0.0806 -2.1771 46 1 5.9252 1.1450 -2.3984 47 1 5.5046 -0.0550 -4.4861 48 1 5.5081 -1.6136 -3.6257 49 1 7.8680 0.3151 -3.7996 50 1 7.6892 -1.1819 -4.7452 51 1 10.2305 -3.3184 -0.1870 52 1 8.2387 0.1792 -1.2954 53 1 8.0574 -1.3970 -0.4856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118510106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:44 Heat of formation + Delta-G solvation = -38.263958 kcal Electronic energy + Delta-G solvation = -32055.763436 eV Core-core repulsion = 28121.597979 eV Total energy + Delta-G solvation = -3934.165457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.54956 -40.55287 -38.88610 -38.36231 -35.97138 -35.27594 -33.92086 -33.37649 -31.58632 -30.67233 -28.16189 -27.85171 -27.01026 -25.97362 -25.01524 -23.73291 -23.40874 -21.82238 -21.53605 -20.53953 -19.72435 -18.58202 -17.76449 -17.66556 -17.28928 -17.01641 -16.52112 -16.26114 -15.93827 -15.74999 -15.44184 -15.23780 -14.96225 -14.78630 -14.66270 -14.52567 -14.36099 -14.01400 -13.89724 -13.66169 -13.46151 -13.36417 -12.88926 -12.83872 -12.77695 -12.58574 -12.47700 -12.29938 -12.24590 -11.94100 -11.85952 -11.69797 -11.67612 -11.51092 -11.40549 -11.32914 -11.04898 -10.98609 -10.71960 -10.54612 -9.64669 -9.47205 -9.33470 -8.11264 -6.28415 0.40737 1.36131 1.41762 1.43003 1.52780 2.17769 2.40593 2.48774 3.14605 3.20511 3.73186 3.83886 3.94979 4.08301 4.14769 4.19819 4.23413 4.27219 4.34976 4.38274 4.44562 4.58845 4.63713 4.72528 4.79209 4.80063 4.83553 4.87420 4.92296 4.97258 5.01284 5.04277 5.10532 5.14511 5.16030 5.18581 5.21931 5.23132 5.26798 5.31385 5.36596 5.45331 5.45967 5.55464 5.62060 5.64142 5.80634 5.85739 5.94918 6.10863 6.29455 6.45610 6.79628 6.84998 7.06674 7.41361 8.92191 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.003464 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.345010 B = 8080.476849 C = 9344.986784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.133 4.133 4 C 0.142 3.858 5 H 0.084 0.916 6 C -0.129 4.129 7 C -0.117 4.117 8 C -0.128 4.128 9 C 0.060 3.940 10 N -0.566 5.566 11 C 0.506 3.494 12 O -0.491 6.491 13 C 0.481 3.519 14 O -0.546 6.546 15 N -0.574 5.574 16 C 0.053 3.947 17 C -0.123 4.123 18 C -0.107 4.107 19 C 0.040 3.960 20 H -0.013 1.013 21 C -0.538 4.538 22 H 0.061 0.939 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.958 3.042 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.266 1.266 29 C 0.122 3.878 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.159 0.841 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.261 0.739 52 H 0.042 0.958 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.011 7.600 6.623 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.189 4.189 4 C 0.041 3.959 5 H 0.102 0.898 6 C -0.167 4.167 7 C -0.155 4.155 8 C -0.166 4.166 9 C -0.061 4.061 10 N -0.298 5.298 11 C 0.290 3.710 12 O -0.371 6.371 13 C 0.265 3.735 14 O -0.427 6.427 15 N -0.305 5.305 16 C -0.067 4.067 17 C -0.161 4.161 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.005 0.995 21 C -0.576 4.576 22 H 0.079 0.921 23 C -0.187 4.187 24 N -0.551 5.551 25 Si 0.784 3.216 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.190 1.190 29 C 0.000 4.000 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.174 0.826 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.060 0.940 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.994 7.453 6.754 22.381 hybrid contribution 1.683 -0.553 -0.038 1.772 sum -18.311 6.899 6.715 20.688 Atomic orbital electron populations 1.21885 0.93926 1.02008 1.02322 1.21730 0.95655 0.97220 0.97188 1.22099 1.01006 0.95221 1.00598 1.21781 0.77287 0.99629 0.97175 0.89832 1.22094 1.02404 0.99085 0.93109 1.21553 0.93953 1.01788 0.98156 1.21963 0.97823 0.99705 0.97140 1.23020 1.01265 0.97132 0.84731 1.48019 1.09186 1.60366 1.12235 1.19784 0.86638 0.80501 0.84042 1.90338 1.66031 1.40307 1.40384 1.20784 0.88643 0.81242 0.82814 1.90460 1.71309 1.39222 1.41659 1.48493 1.09445 1.54528 1.18018 1.23242 1.03432 0.95175 0.84850 1.21805 0.96009 1.00418 0.97872 1.21553 0.94986 0.99689 0.98196 1.18876 0.94752 0.93030 0.91237 0.99467 1.21482 0.92879 1.34558 1.08698 0.92103 1.25861 1.03177 0.94738 0.94912 1.70060 1.36969 1.35599 1.12451 0.85551 0.80092 0.77443 0.78557 1.19933 1.21160 1.18997 1.21905 0.76363 0.98781 1.02969 0.91660 0.92437 0.92380 0.89469 0.93226 0.93310 0.92809 0.91447 0.88455 0.90112 0.91031 0.92698 0.89565 0.90936 0.86517 0.82552 0.91534 0.88369 0.93608 0.92570 0.93007 0.92961 0.93997 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.94 71.98 0.64 -1.48 16 2 C -0.10 -2.03 2.16 -10.79 -0.02 -2.05 16 3 C -0.13 -2.84 7.61 71.98 0.55 -2.30 16 4 C 0.14 2.85 2.62 44.98 0.12 2.96 16 5 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 6 C -0.13 -1.98 4.64 30.67 0.14 -1.84 16 7 C -0.12 -1.71 5.88 30.62 0.18 -1.53 16 8 C -0.13 -2.54 6.10 30.82 0.19 -2.36 16 9 C 0.06 1.59 6.06 86.51 0.52 2.11 16 10 N -0.57 -15.14 2.94 -795.76 -2.34 -17.48 16 11 C 0.51 16.39 6.85 87.27 0.60 16.99 16 12 O -0.49 -14.88 6.23 -3.25 -0.02 -14.90 16 13 C 0.48 19.78 7.61 87.27 0.66 20.44 16 14 O -0.55 -25.49 12.56 -3.25 -0.04 -25.53 16 15 N -0.57 -24.27 2.98 -821.33 -2.45 -26.72 16 16 C 0.05 1.83 6.14 86.22 0.53 2.36 16 17 C -0.12 -4.20 6.06 30.53 0.19 -4.01 16 18 C -0.11 -4.38 5.11 30.62 0.16 -4.23 16 19 C 0.04 2.08 2.25 -11.46 -0.03 2.05 16 20 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 21 C -0.54 -29.90 8.56 25.60 0.22 -29.68 16 22 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 23 C 0.01 0.72 5.30 84.66 0.45 1.17 16 24 N -0.91 -54.60 11.39 21.45 0.24 -54.36 16 25 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 27 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 C 0.12 6.12 5.41 86.36 0.47 6.59 16 30 H 0.06 0.79 7.14 -2.39 -0.02 0.77 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.09 2.24 5.70 -8.35 -0.05 2.19 16 34 H 0.05 1.33 5.22 -2.95 -0.02 1.31 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.99 6.07 -2.38 -0.01 0.97 16 37 H 0.07 1.18 5.95 -2.39 -0.01 1.16 16 38 H 0.10 1.08 7.15 -2.39 -0.02 1.06 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.12 4.05 4.20 -56.96 -0.24 3.81 16 45 H 0.16 5.03 3.91 -60.84 -0.24 4.80 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 52 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.09 5.02 5.12 -2.38 -0.01 5.01 16 Total: -1.00 -65.03 380.97 3.38 -61.64 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.40 Total: 26.04 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.56 Total: 5.20 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.55 Total: -98.56 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.06 Total: -40.43 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.03 3.38 -61.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118510106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds