Wall clock time and date at job start Tue Mar 31 2020 20:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47264 * 2 1 4 4 C 1.32998 * 120.00429 * 84.95006 * 3 2 1 5 5 C 1.47099 * 119.99409 * 352.75189 * 4 3 2 6 6 O 1.21617 * 120.00102 * 353.23316 * 5 4 3 7 7 N 1.34775 * 119.99869 * 173.22638 * 5 4 3 8 8 C 1.47164 * 121.07807 * 175.21673 * 7 5 4 9 9 C 1.53275 * 108.57319 * 128.76776 * 8 7 5 10 10 H 1.09004 * 109.50717 * 293.00474 * 9 8 7 11 11 C 1.52991 * 109.51410 * 172.90484 * 9 8 7 12 12 O 1.43120 * 109.23138 * 52.97379 * 9 8 7 13 13 C 1.41891 * 114.37301 * 299.11045 * 12 9 8 14 14 C 1.54366 * 110.71255 * 296.74104 * 13 12 9 15 15 C 1.54465 * 102.86860 * 276.29598 * 14 13 12 16 16 N 1.47087 * 107.29245 * 338.49817 * 15 14 13 17 17 C 1.36942 * 125.62775 * 179.04208 * 16 15 14 18 18 H 1.08002 * 119.99801 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99712 * 0.02562 * 17 16 15 20 20 N 1.31615 * 120.00668 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99798 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46869 * 89.99970 * 21 19 17 23 23 H 1.48498 * 109.47163 * 210.00312 * 21 19 17 24 24 H 1.48501 * 109.46934 * 330.00253 * 21 19 17 25 25 C 1.47578 * 108.74096 * 359.02470 * 16 15 14 26 26 C 1.47334 * 121.07501 * 355.19309 * 7 5 4 27 27 C 1.50707 * 120.00220 * 264.94656 * 3 2 1 28 28 C 1.52995 * 109.47355 * 275.00611 * 27 3 2 29 29 H 1.09007 * 109.46710 * 60.00030 * 1 2 3 30 30 H 1.08997 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47024 * 300.00243 * 1 2 3 32 32 H 1.09000 * 109.47024 * 239.99756 * 2 1 3 33 33 H 1.08998 * 109.47189 * 120.00335 * 2 1 3 34 34 H 1.07997 * 120.00054 * 172.75233 * 4 3 2 35 35 H 1.09000 * 109.62211 * 9.03917 * 8 7 5 36 36 H 1.09006 * 109.77087 * 248.57813 * 8 7 5 37 37 H 1.09003 * 109.47695 * 59.99639 * 11 9 8 38 38 H 1.08998 * 109.47221 * 299.99901 * 11 9 8 39 39 H 1.09004 * 109.47629 * 180.02562 * 11 9 8 40 40 H 1.09005 * 110.73734 * 34.63928 * 14 13 12 41 41 H 1.09000 * 110.73869 * 157.77260 * 14 13 12 42 42 H 1.09004 * 109.87956 * 97.92501 * 15 14 13 43 43 H 1.08997 * 109.87935 * 219.07846 * 15 14 13 44 44 H 0.96997 * 120.00790 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.37141 * 264.46917 * 25 16 15 46 46 H 1.09003 * 110.37070 * 142.12855 * 25 16 15 47 47 H 1.08995 * 109.67954 * 348.93379 * 26 7 5 48 48 H 1.09006 * 109.67715 * 109.47729 * 26 7 5 49 49 H 1.08999 * 109.46752 * 34.99879 * 27 3 2 50 50 H 1.08993 * 109.47611 * 154.99826 * 27 3 2 51 51 H 1.08998 * 109.47687 * 180.02562 * 28 27 3 52 52 H 1.09010 * 109.47008 * 299.99569 * 28 27 3 53 53 H 1.09005 * 109.47776 * 59.99171 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1585 2.0816 1.1473 5 6 1.6600 1.4870 2.3970 6 8 1.0243 0.4506 2.3662 7 7 1.9078 2.0908 3.5762 8 6 1.3335 1.5750 4.8292 9 6 2.4623 1.4133 5.8534 10 1 3.1391 0.6233 5.5275 11 6 1.8684 1.0478 7.2151 12 8 3.1816 2.6459 5.9608 13 6 3.7934 3.0739 4.7542 14 6 4.8661 2.0624 4.2972 15 6 6.1071 2.4841 5.1146 16 7 5.9072 3.8830 5.5226 17 6 6.7739 4.6247 6.2802 18 1 6.5348 5.6484 6.5276 19 6 7.9597 4.0606 6.7301 20 7 8.2509 2.8129 6.4290 21 14 9.1425 5.0726 7.7629 22 1 8.8088 4.9088 9.2006 23 1 10.5323 4.6086 7.5213 24 1 9.0265 6.5047 7.3878 25 6 4.6185 4.3555 4.9803 26 6 2.7628 3.2882 3.6527 27 6 2.3920 2.0929 -1.3001 28 6 3.8320 1.7386 -1.6762 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6268 3.0546 1.1613 35 1 0.8641 0.6084 4.6461 36 1 0.5910 2.2761 5.2106 37 1 1.3171 0.1112 7.1316 38 1 1.1932 1.8389 7.5411 39 1 2.6716 0.9334 7.9430 40 1 4.5675 1.0441 4.5467 41 1 5.0548 2.1566 3.2278 42 1 6.2027 1.8508 5.9967 43 1 7.0023 2.4021 4.4983 44 1 9.0797 2.4188 6.7431 45 1 4.7729 4.8790 4.0368 46 1 4.1201 5.0060 5.6991 47 1 3.2700 3.4385 2.6997 48 1 2.1524 4.1607 3.8857 49 1 1.7170 1.7509 -2.0847 50 1 2.3010 3.1732 -1.1879 51 1 4.0923 2.2251 -2.6162 52 1 4.5071 2.0805 -0.8915 53 1 3.9231 0.6582 -1.7883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131649186.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:01 Heat of formation + Delta-G solvation = -50.319303 kcal Electronic energy + Delta-G solvation = -31376.368361 eV Core-core repulsion = 27441.680145 eV Total energy + Delta-G solvation = -3934.688216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85448 -40.34586 -38.05816 -37.28459 -35.85574 -34.74002 -33.02706 -32.78249 -31.18583 -30.93516 -29.93913 -27.85117 -27.20904 -25.52222 -25.03150 -24.13991 -23.12646 -22.03573 -21.40029 -20.39261 -19.06329 -18.90937 -18.40390 -17.70271 -16.88531 -16.75012 -16.51929 -16.16450 -15.72164 -15.71567 -15.52319 -15.08467 -15.00415 -14.79698 -14.42421 -14.20699 -14.02418 -13.88217 -13.65105 -13.51311 -13.41924 -13.18388 -13.03530 -13.01850 -12.80131 -12.77535 -12.75421 -12.52974 -12.27265 -12.13144 -12.05494 -11.98755 -11.84793 -11.77867 -11.68041 -11.60099 -11.33244 -10.84190 -10.69061 -10.50309 -10.08942 -9.41098 -8.88901 -7.83140 -5.18489 0.40539 1.46321 1.48837 1.57192 1.90135 2.27939 2.50403 2.62112 3.35368 3.46454 3.49369 3.66999 3.77438 3.84773 3.86428 3.98573 4.00635 4.13184 4.21623 4.31347 4.32869 4.42669 4.43787 4.47814 4.56004 4.59203 4.65401 4.70913 4.73374 4.75064 4.79579 4.82027 4.86410 4.95011 4.99267 5.03348 5.06134 5.07937 5.11936 5.17017 5.24047 5.37647 5.39948 5.45312 5.49378 5.56843 5.60566 5.70161 5.72618 6.18771 6.38863 6.39367 7.10357 7.18875 7.77763 8.42109 9.27632 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003346 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.484889 B = 8367.275038 C = 9718.960271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 C -0.013 4.013 4 C -0.248 4.248 5 C 0.544 3.456 6 O -0.561 6.561 7 N -0.612 5.612 8 C 0.093 3.907 9 C 0.068 3.932 10 H 0.044 0.956 11 C -0.135 4.135 12 O -0.372 6.372 13 C 0.102 3.898 14 C -0.149 4.149 15 C 0.198 3.802 16 N -0.621 5.621 17 C -0.236 4.236 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.979 3.021 22 H -0.290 1.290 23 H -0.296 1.296 24 H -0.264 1.264 25 C 0.147 3.853 26 C 0.102 3.898 27 C -0.093 4.093 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.082 0.918 42 H -0.001 1.001 43 H 0.008 0.992 44 H 0.245 0.755 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.049 0.951 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 -1.940 -14.572 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.133 4.133 3 C -0.015 4.015 4 C -0.268 4.268 5 C 0.338 3.662 6 O -0.443 6.443 7 N -0.344 5.344 8 C -0.030 4.030 9 C 0.009 3.991 10 H 0.062 0.938 11 C -0.193 4.193 12 O -0.292 6.292 13 C 0.061 3.939 14 C -0.188 4.188 15 C 0.073 3.927 16 N -0.348 5.348 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.807 3.193 22 H -0.217 1.217 23 H -0.222 1.222 24 H -0.189 1.189 25 C 0.021 3.979 26 C -0.021 4.021 27 C -0.130 4.130 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.133 0.867 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.094 0.906 52 H 0.068 0.932 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.183 -2.376 -14.315 22.491 hybrid contribution 1.286 -0.041 0.960 1.605 sum -15.897 -2.417 -13.355 20.903 Atomic orbital electron populations 1.21545 0.93968 1.01649 1.01379 1.20799 0.97286 0.92931 1.02296 1.22827 0.88577 0.95097 0.95019 1.22513 1.09176 1.03714 0.91402 1.18945 0.79578 0.83416 0.84276 1.90713 1.42653 1.23934 1.87024 1.48107 1.49720 1.29704 1.06887 1.22238 0.95660 1.01789 0.83324 1.22600 0.92378 0.86524 0.97552 0.93791 1.21684 1.01029 1.02913 0.93641 1.87873 1.68856 1.39725 1.32708 1.22244 0.91137 0.95284 0.85250 1.23175 0.96447 0.98861 1.00304 1.20735 0.92835 0.84931 0.94175 1.44712 1.19278 1.10169 1.60592 1.19482 0.97966 0.95203 1.23877 0.89574 1.25661 1.00196 0.97630 1.02689 1.70202 1.25067 1.13980 1.51097 0.85069 0.77665 0.78384 0.78173 1.21673 1.22228 1.18884 1.21585 0.85030 0.93183 0.98061 1.22250 0.92116 0.87839 0.99908 1.20819 0.98124 1.00855 0.93202 1.21735 0.94746 1.01982 1.02109 0.92318 0.92835 0.93125 0.90651 0.91568 0.83704 0.88414 0.89548 0.88663 0.90769 0.92982 0.92083 0.89904 0.98224 0.97391 0.94627 0.91984 0.93170 0.86679 0.88714 0.88967 0.89471 0.90611 0.93177 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.31 71.98 0.67 -1.89 16 2 C -0.10 -1.96 5.35 29.85 0.16 -1.80 16 3 C -0.01 -0.25 4.62 -17.62 -0.08 -0.33 16 4 C -0.25 -5.20 8.79 23.43 0.21 -5.00 16 5 C 0.54 14.35 7.47 86.57 0.65 15.00 16 6 O -0.56 -17.00 10.50 -4.08 -0.04 -17.04 16 7 N -0.61 -15.79 2.95 -822.93 -2.42 -18.21 16 8 C 0.09 2.34 5.92 86.34 0.51 2.86 16 9 C 0.07 2.00 3.19 30.68 0.10 2.10 16 10 H 0.04 1.47 6.23 -2.38 -0.01 1.45 16 11 C -0.14 -3.31 9.57 71.98 0.69 -2.62 16 12 O -0.37 -13.66 9.93 -148.95 -1.48 -15.13 16 13 C 0.10 3.48 0.84 -10.17 -0.01 3.47 16 14 C -0.15 -5.73 5.87 31.56 0.19 -5.55 16 15 C 0.20 10.20 5.38 86.77 0.47 10.67 16 16 N -0.62 -32.25 3.40 -692.77 -2.36 -34.60 16 17 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 18 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 20 N -0.95 -58.94 10.31 21.65 0.22 -58.72 16 21 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.15 5.78 6.42 86.54 0.56 6.33 16 26 C 0.10 2.53 5.14 86.01 0.44 2.97 16 27 C -0.09 -1.18 6.08 29.85 0.18 -1.00 16 28 C -0.15 -1.93 9.89 71.98 0.71 -1.22 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.24 6.09 -2.39 -0.01 1.23 16 32 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.07 1.75 6.13 -2.39 -0.01 1.73 16 34 H 0.15 2.48 6.20 -2.91 -0.02 2.46 16 35 H 0.10 2.48 7.06 -2.39 -0.02 2.46 16 36 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.06 2.36 6.07 -2.38 -0.01 2.34 16 41 H 0.08 2.83 7.82 -2.39 -0.02 2.81 16 42 H 0.00 -0.03 7.39 -2.38 -0.02 -0.05 16 43 H 0.01 0.45 7.50 -2.39 -0.02 0.43 16 44 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.06 2.14 7.99 -2.39 -0.02 2.13 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.12 2.41 5.40 -2.39 -0.01 2.40 16 48 H 0.09 2.03 8.14 -2.38 -0.02 2.02 16 49 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.09 0.94 8.03 -2.39 -0.02 0.92 16 51 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 53 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -72.30 401.41 3.59 -68.72 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.88 Total: 18.58 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.76 Total: 7.94 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.56 Total: -111.54 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.52 Total: -32.17 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.30 3.59 -68.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131649186.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.397 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds