Wall clock time and date at job start Tue Mar 31 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47109 * 120.00075 * 2 1 4 4 C 1.50703 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.32871 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.50700 * 120.00152 * 185.40600 * 5 3 2 7 7 C 1.50707 * 109.47018 * 124.65909 * 6 5 3 8 8 O 1.21274 * 119.99993 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99734 * 185.14842 * 9 7 6 11 11 C 1.53000 * 109.44837 * 297.16216 * 10 9 7 12 12 C 1.52995 * 109.47578 * 300.19765 * 11 10 9 13 13 O 1.42901 * 109.47146 * 183.53332 * 12 11 10 14 14 C 1.42901 * 113.99654 * 180.02562 * 13 12 11 15 15 C 1.53047 * 109.45833 * 177.19861 * 10 9 7 16 16 C 1.53187 * 109.31427 * 301.34721 * 15 10 9 17 17 N 1.46925 * 108.77491 * 305.36398 * 16 15 10 18 18 C 1.36941 * 120.63459 * 233.58760 * 17 16 15 19 19 H 1.07995 * 120.00283 * 148.87724 * 18 17 16 20 20 C 1.38808 * 119.99619 * 328.60913 * 18 17 16 21 21 N 1.31626 * 119.99936 * 349.37197 * 20 18 17 22 22 Si 1.86797 * 119.99900 * 169.37367 * 20 18 17 23 23 H 1.48493 * 109.47356 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47164 * 120.00098 * 22 20 18 25 25 H 1.48509 * 109.47016 * 239.99655 * 22 20 18 26 26 C 1.46929 * 118.74131 * 53.85638 * 17 16 15 27 27 C 1.53039 * 109.46222 * 57.13192 * 10 9 7 28 28 H 1.07996 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00324 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46956 * 215.09559 * 4 3 2 32 32 H 1.08999 * 109.46619 * 335.08895 * 4 3 2 33 33 H 1.08997 * 109.47343 * 95.08902 * 4 3 2 34 34 H 1.08002 * 120.00017 * 5.40797 * 5 3 2 35 35 H 1.09001 * 109.47169 * 4.66285 * 6 5 3 36 36 H 1.08997 * 109.47452 * 244.65866 * 6 5 3 37 37 H 0.97003 * 120.00159 * 5.15274 * 9 7 6 38 38 H 1.09003 * 109.47196 * 60.20802 * 11 10 9 39 39 H 1.09007 * 109.47052 * 180.19958 * 11 10 9 40 40 H 1.08997 * 109.47523 * 303.54456 * 12 11 10 41 41 H 1.09007 * 109.46437 * 63.54088 * 12 11 10 42 42 H 1.09000 * 109.46890 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47536 * 300.00279 * 14 13 12 44 44 H 1.08994 * 109.47489 * 60.00307 * 14 13 12 45 45 H 1.09000 * 109.49670 * 181.39275 * 15 10 9 46 46 H 1.09003 * 109.52286 * 61.31471 * 15 10 9 47 47 H 1.09001 * 109.58827 * 185.58177 * 16 15 10 48 48 H 1.08999 * 109.58942 * 65.15126 * 16 15 10 49 49 H 0.97005 * 119.99802 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.58280 * 65.92750 * 26 17 16 51 51 H 1.08993 * 109.59097 * 186.35318 * 26 17 16 52 52 H 1.09001 * 109.49895 * 178.60579 * 27 10 9 53 53 H 1.08994 * 109.49853 * 298.70000 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1465 2.5733 0.1235 7 6 5.0970 2.4943 1.2903 8 8 5.1569 1.4824 1.9561 9 7 5.8803 3.5482 1.5939 10 6 6.8834 3.4335 2.6554 11 6 6.1846 3.1648 3.9897 12 6 5.2299 4.3176 4.3067 13 8 4.6390 4.1073 5.5907 14 6 3.7250 5.1327 5.9848 15 6 7.6777 4.7384 2.7494 16 6 8.3476 5.0220 1.4013 17 7 9.1506 3.8532 1.0171 18 6 10.4748 3.9912 0.6965 19 1 11.1665 3.1874 0.9009 20 6 10.9269 5.1621 0.1038 21 7 10.0635 6.0506 -0.3406 22 14 12.7606 5.4767 -0.0633 23 1 13.5135 4.3328 0.5111 24 1 13.1082 5.6277 -1.4991 25 1 13.1180 6.7201 0.6659 26 6 8.5045 2.5342 0.9776 27 6 7.8341 2.2776 2.3358 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8687 -0.9354 -0.0004 31 1 1.8571 3.3143 -0.5903 32 1 0.3218 2.4278 -0.4319 33 1 1.2085 2.9392 1.0243 34 1 3.9330 0.3428 -0.0872 35 1 3.4411 3.3886 0.2841 36 1 4.7094 2.7549 -0.7920 37 1 5.7799 4.3826 1.1096 38 1 5.6213 2.2340 3.9239 39 1 6.9305 3.0830 4.7804 40 1 5.7828 5.2568 4.3105 41 1 4.4472 4.3597 3.5491 42 1 3.3205 4.8998 6.9698 43 1 4.2465 6.0891 6.0234 44 1 2.9113 5.1915 5.2621 45 1 8.4405 4.6450 3.5223 46 1 7.0039 5.5576 3.0004 47 1 8.9934 5.8955 1.4908 48 1 7.5842 5.2053 0.6453 49 1 10.3795 6.8687 -0.7552 50 1 7.7535 2.5187 0.1877 51 1 9.2537 1.7658 0.7874 52 1 8.5955 2.2074 3.1126 53 1 7.2713 1.3452 2.2921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151241608.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:32 Heat of formation + Delta-G solvation = -32.147790 kcal Electronic energy + Delta-G solvation = -30821.764130 eV Core-core repulsion = 26887.863890 eV Total energy + Delta-G solvation = -3933.900240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.32953 -38.08552 -37.43606 -36.68813 -34.53703 -32.74737 -31.83780 -31.48603 -29.96542 -29.10180 -28.58357 -26.68961 -26.44148 -24.80791 -23.09251 -22.30293 -21.68293 -20.47792 -19.95858 -18.70014 -17.90817 -17.20251 -16.77914 -16.41066 -16.05848 -15.89399 -15.16999 -14.82682 -14.78242 -14.61203 -14.08651 -13.87553 -13.81028 -13.45282 -13.37694 -13.27727 -12.98247 -12.88922 -12.67556 -12.35619 -12.29304 -11.71784 -11.69493 -11.56843 -11.45676 -11.23591 -11.10055 -11.01151 -10.93919 -10.90056 -10.76630 -10.61116 -10.35030 -10.28545 -9.93574 -9.78172 -9.73579 -9.44617 -9.09001 -8.61671 -8.50300 -8.27571 -6.63211 -5.82228 -3.28950 1.26136 2.90987 2.94290 3.34104 3.42353 3.44536 3.60129 3.82532 4.46611 4.58889 4.75850 4.94276 5.10549 5.11649 5.18731 5.21270 5.25752 5.29952 5.34010 5.37191 5.38703 5.47637 5.50763 5.55025 5.57442 5.58124 5.59735 5.64217 5.72471 5.80392 5.88407 6.10097 6.20048 6.26079 6.28892 6.30232 6.38682 6.42526 6.51512 6.60018 6.63603 6.68540 6.82106 6.85918 6.95029 7.07263 7.23215 7.28018 7.58663 7.76725 7.91136 8.44899 8.57516 9.19904 9.81233 10.39555 11.25794 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.003331 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.053360 B = 8405.042528 C =10104.359112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.123 4.123 7 C 0.521 3.479 8 O -0.537 6.537 9 N -0.713 5.713 10 C 0.195 3.805 11 C -0.128 4.128 12 C 0.066 3.934 13 O -0.394 6.394 14 C 0.033 3.967 15 C -0.150 4.150 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.152 3.848 27 C -0.142 4.142 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.090 0.910 48 H 0.016 0.984 49 H 0.253 0.747 50 H 0.016 0.984 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 -3.191 3.877 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.178 4.178 5 C -0.123 4.123 6 C -0.162 4.162 7 C 0.307 3.693 8 O -0.414 6.414 9 N -0.365 5.365 10 C 0.109 3.891 11 C -0.167 4.167 12 C -0.010 4.010 13 O -0.313 6.313 14 C -0.064 4.064 15 C -0.189 4.189 16 C 0.048 3.952 17 N -0.314 5.314 18 C -0.378 4.378 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.026 3.974 27 C -0.182 4.182 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.069 0.931 52 H 0.083 0.917 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.318 -3.924 4.373 18.288 hybrid contribution 0.812 0.957 -0.552 1.371 sum -16.506 -2.967 3.820 17.200 Atomic orbital electron populations 1.24356 0.95717 1.01829 1.01469 1.21861 0.95257 0.96140 0.99349 1.20500 0.93909 0.94240 1.03426 1.20871 1.00099 0.94691 1.02101 1.22814 0.93759 0.97925 0.97762 1.20861 0.98598 0.98102 0.98676 1.20295 0.80671 0.83372 0.84989 1.90623 1.68149 1.30958 1.51707 1.46159 1.36856 1.15042 1.38448 1.20174 0.86804 0.97415 0.84662 1.21979 0.98578 0.99140 0.96977 1.22607 0.95594 0.98933 0.83908 1.87874 1.60440 1.46979 1.35979 1.22684 0.92393 0.91157 1.00164 1.22624 0.98834 0.94314 1.03161 1.20741 0.93589 0.92095 0.88739 1.44023 1.07570 1.01605 1.78173 1.19240 0.83869 1.01832 1.32905 0.91820 1.25144 0.97663 0.98940 0.97772 1.69965 1.32226 1.10455 1.42498 0.86203 0.85260 0.77847 0.77358 1.20260 1.21702 1.21621 1.20918 0.94814 0.88918 0.92793 1.22444 0.97707 0.97572 1.00451 0.88172 0.88339 0.86874 0.91327 0.91663 0.91606 0.86364 0.88427 0.87709 0.76550 0.89328 0.90896 0.93082 0.93882 0.90001 0.94226 0.94447 0.90953 0.92714 0.89192 0.96586 0.93739 0.96643 0.93079 0.91729 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 14.12 28.88 0.41 -1.30 16 2 C -0.11 -1.10 9.83 -37.83 -0.37 -1.48 16 3 C -0.12 -1.31 5.98 -102.87 -0.62 -1.93 16 4 C -0.12 -1.07 8.56 36.01 0.31 -0.76 16 5 C -0.10 -1.24 8.45 -36.16 -0.31 -1.55 16 6 C -0.12 -1.41 5.80 -29.03 -0.17 -1.58 16 7 C 0.52 7.66 7.15 -10.98 -0.08 7.58 16 8 O -0.54 -9.49 12.28 5.56 0.07 -9.42 16 9 N -0.71 -10.42 3.35 -47.57 -0.16 -10.58 16 10 C 0.19 3.17 0.35 -131.78 -0.05 3.12 16 11 C -0.13 -2.01 4.46 -26.73 -0.12 -2.12 16 12 C 0.07 0.93 5.48 37.15 0.20 1.13 16 13 O -0.39 -5.74 10.70 -35.23 -0.38 -6.12 16 14 C 0.03 0.35 11.01 101.05 1.11 1.46 16 15 C -0.15 -2.60 4.64 -26.61 -0.12 -2.72 16 16 C 0.17 3.79 4.98 -3.71 -0.02 3.77 16 17 N -0.59 -14.12 2.98 -172.06 -0.51 -14.64 16 18 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 19 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 20 C 0.00 0.08 5.05 -17.43 -0.09 -0.01 16 21 N -0.91 -25.16 11.05 55.49 0.61 -24.55 16 22 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.15 3.19 6.28 -3.48 -0.02 3.17 16 27 C -0.14 -2.60 4.64 -26.39 -0.12 -2.72 16 28 H 0.10 0.79 6.05 -52.49 -0.32 0.47 16 29 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 31 H 0.07 0.55 6.67 -51.93 -0.35 0.20 16 32 H 0.06 0.50 6.18 -51.93 -0.32 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.50 8.05 -52.49 -0.42 1.07 16 35 H 0.10 0.93 5.74 -51.93 -0.30 0.63 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.40 5.38 7.36 -40.82 -0.30 5.08 16 38 H 0.09 1.55 6.21 -51.93 -0.32 1.23 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.69 6.22 -51.93 -0.32 0.36 16 41 H 0.04 0.59 7.71 -51.92 -0.40 0.19 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.83 6.29 -51.93 -0.33 0.51 16 47 H 0.09 2.25 6.10 -51.93 -0.32 1.93 16 48 H 0.02 0.35 7.00 -51.93 -0.36 -0.01 16 49 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 50 H 0.02 0.33 7.66 -51.93 -0.40 -0.07 16 51 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 52 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 53 H 0.07 1.39 6.18 -51.93 -0.32 1.06 16 LS Contribution 406.38 15.07 6.12 6.12 Total: -1.00 -30.51 406.38 -8.43 -38.93 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.96 Total: 6.70 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.19 Total: -2.73 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.06 Total: -49.76 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.31 Total: -15.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.51 -8.43 -38.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151241608.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.785 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds