Wall clock time and date at job start Tue Mar 31 2020 20:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47109 * 120.00075 * 2 1 4 4 C 1.50703 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.32871 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.50700 * 120.00152 * 185.40600 * 5 3 2 7 7 C 1.50707 * 109.47018 * 124.65909 * 6 5 3 8 8 O 1.21274 * 119.99993 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.46492 * 119.99734 * 185.14842 * 9 7 6 11 11 C 1.53000 * 109.44837 * 297.16216 * 10 9 7 12 12 C 1.52995 * 109.47578 * 300.19765 * 11 10 9 13 13 O 1.42901 * 109.47146 * 183.53332 * 12 11 10 14 14 C 1.42901 * 113.99654 * 180.02562 * 13 12 11 15 15 C 1.53047 * 109.45833 * 177.19861 * 10 9 7 16 16 C 1.53187 * 109.31427 * 301.34721 * 15 10 9 17 17 N 1.46925 * 108.77491 * 305.36398 * 16 15 10 18 18 C 1.36941 * 120.63459 * 233.58760 * 17 16 15 19 19 H 1.07995 * 120.00283 * 148.87724 * 18 17 16 20 20 C 1.38808 * 119.99619 * 328.60913 * 18 17 16 21 21 N 1.31626 * 119.99936 * 349.37197 * 20 18 17 22 22 Si 1.86797 * 119.99900 * 169.37367 * 20 18 17 23 23 H 1.48493 * 109.47356 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47164 * 120.00098 * 22 20 18 25 25 H 1.48509 * 109.47016 * 239.99655 * 22 20 18 26 26 C 1.46929 * 118.74131 * 53.85638 * 17 16 15 27 27 C 1.53039 * 109.46222 * 57.13192 * 10 9 7 28 28 H 1.07996 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00324 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46956 * 215.09559 * 4 3 2 32 32 H 1.08999 * 109.46619 * 335.08895 * 4 3 2 33 33 H 1.08997 * 109.47343 * 95.08902 * 4 3 2 34 34 H 1.08002 * 120.00017 * 5.40797 * 5 3 2 35 35 H 1.09001 * 109.47169 * 4.66285 * 6 5 3 36 36 H 1.08997 * 109.47452 * 244.65866 * 6 5 3 37 37 H 0.97003 * 120.00159 * 5.15274 * 9 7 6 38 38 H 1.09003 * 109.47196 * 60.20802 * 11 10 9 39 39 H 1.09007 * 109.47052 * 180.19958 * 11 10 9 40 40 H 1.08997 * 109.47523 * 303.54456 * 12 11 10 41 41 H 1.09007 * 109.46437 * 63.54088 * 12 11 10 42 42 H 1.09000 * 109.46890 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47536 * 300.00279 * 14 13 12 44 44 H 1.08994 * 109.47489 * 60.00307 * 14 13 12 45 45 H 1.09000 * 109.49670 * 181.39275 * 15 10 9 46 46 H 1.09003 * 109.52286 * 61.31471 * 15 10 9 47 47 H 1.09001 * 109.58827 * 185.58177 * 16 15 10 48 48 H 1.08999 * 109.58942 * 65.15126 * 16 15 10 49 49 H 0.97005 * 119.99802 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.58280 * 65.92750 * 26 17 16 51 51 H 1.08993 * 109.59097 * 186.35318 * 26 17 16 52 52 H 1.09001 * 109.49895 * 178.60579 * 27 10 9 53 53 H 1.08994 * 109.49853 * 298.70000 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1465 2.5733 0.1235 7 6 5.0970 2.4943 1.2903 8 8 5.1569 1.4824 1.9561 9 7 5.8803 3.5482 1.5939 10 6 6.8834 3.4335 2.6554 11 6 6.1846 3.1648 3.9897 12 6 5.2299 4.3176 4.3067 13 8 4.6390 4.1073 5.5907 14 6 3.7250 5.1327 5.9848 15 6 7.6777 4.7384 2.7494 16 6 8.3476 5.0220 1.4013 17 7 9.1506 3.8532 1.0171 18 6 10.4748 3.9912 0.6965 19 1 11.1665 3.1874 0.9009 20 6 10.9269 5.1621 0.1038 21 7 10.0635 6.0506 -0.3406 22 14 12.7606 5.4767 -0.0633 23 1 13.5135 4.3328 0.5111 24 1 13.1082 5.6277 -1.4991 25 1 13.1180 6.7201 0.6659 26 6 8.5045 2.5342 0.9776 27 6 7.8341 2.2776 2.3358 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8687 -0.9354 -0.0004 31 1 1.8571 3.3143 -0.5903 32 1 0.3218 2.4278 -0.4319 33 1 1.2085 2.9392 1.0243 34 1 3.9330 0.3428 -0.0872 35 1 3.4411 3.3886 0.2841 36 1 4.7094 2.7549 -0.7920 37 1 5.7799 4.3826 1.1096 38 1 5.6213 2.2340 3.9239 39 1 6.9305 3.0830 4.7804 40 1 5.7828 5.2568 4.3105 41 1 4.4472 4.3597 3.5491 42 1 3.3205 4.8998 6.9698 43 1 4.2465 6.0891 6.0234 44 1 2.9113 5.1915 5.2621 45 1 8.4405 4.6450 3.5223 46 1 7.0039 5.5576 3.0004 47 1 8.9934 5.8955 1.4908 48 1 7.5842 5.2053 0.6453 49 1 10.3795 6.8687 -0.7552 50 1 7.7535 2.5187 0.1877 51 1 9.2537 1.7658 0.7874 52 1 8.5955 2.2074 3.1126 53 1 7.2713 1.3452 2.2921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151241608.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:31 Heat of formation + Delta-G solvation = -49.117207 kcal Electronic energy + Delta-G solvation = -30822.499979 eV Core-core repulsion = 26887.863890 eV Total energy + Delta-G solvation = -3934.636089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62499 -39.25877 -38.60003 -37.67990 -36.16436 -33.85183 -33.42823 -32.69450 -31.59713 -30.49776 -29.51861 -27.74098 -27.34187 -26.36797 -24.60868 -23.82161 -22.79326 -21.92579 -21.05774 -20.12570 -18.84901 -18.65635 -18.11046 -17.51691 -17.08183 -16.90404 -16.73952 -16.36020 -15.90193 -15.67272 -15.50885 -15.23501 -15.03424 -14.87810 -14.76217 -14.26846 -14.22340 -14.01560 -13.83608 -13.68436 -13.23716 -13.20330 -12.98479 -12.87033 -12.65748 -12.60259 -12.44901 -12.29769 -12.27555 -12.14304 -12.07675 -11.94452 -11.79221 -11.71507 -11.37701 -11.31277 -11.23427 -10.62282 -10.53780 -10.37757 -9.88563 -9.08786 -8.57935 -7.85447 -5.34667 0.46218 1.45952 1.48842 1.58110 1.78375 2.08052 2.46778 2.51963 2.81473 3.30406 3.71395 3.73285 3.78846 3.95005 4.00358 4.09797 4.14866 4.19049 4.32987 4.36214 4.43651 4.45870 4.47945 4.53523 4.54795 4.58599 4.63102 4.69698 4.79115 4.82541 4.83007 4.90104 4.91933 5.00024 5.00624 5.01564 5.13029 5.14985 5.19481 5.28484 5.32276 5.50618 5.51819 5.61982 5.66253 5.73208 5.80964 5.81788 6.07209 6.25206 6.43972 6.73770 7.19570 7.41352 7.87833 8.40529 9.19478 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.003331 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.053360 B = 8405.042528 C =10104.359112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.124 4.124 5 C -0.135 4.135 6 C -0.111 4.111 7 C 0.518 3.482 8 O -0.568 6.568 9 N -0.710 5.710 10 C 0.203 3.797 11 C -0.119 4.119 12 C 0.072 3.928 13 O -0.419 6.419 14 C 0.026 3.974 15 C -0.134 4.134 16 C 0.182 3.818 17 N -0.606 5.606 18 C -0.263 4.263 19 H 0.056 0.944 20 C -0.042 4.042 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.156 3.844 27 C -0.131 4.131 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.408 0.592 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.013 0.987 49 H 0.250 0.750 50 H 0.013 0.987 51 H 0.039 0.961 52 H 0.058 0.942 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 -2.280 4.267 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.110 4.110 4 C -0.180 4.180 5 C -0.154 4.154 6 C -0.150 4.150 7 C 0.306 3.694 8 O -0.448 6.448 9 N -0.362 5.362 10 C 0.117 3.883 11 C -0.157 4.157 12 C -0.004 4.004 13 O -0.339 6.339 14 C -0.070 4.070 15 C -0.173 4.173 16 C 0.056 3.944 17 N -0.330 5.330 18 C -0.393 4.393 19 H 0.074 0.926 20 C -0.238 4.238 21 N -0.574 5.574 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.215 1.215 26 C 0.030 3.970 27 C -0.171 4.171 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.031 0.969 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.354 -3.011 4.765 20.158 hybrid contribution 1.314 0.589 -0.673 1.589 sum -18.041 -2.423 4.093 18.657 Atomic orbital electron populations 1.24634 0.95113 1.03203 0.98123 1.21972 0.96105 0.95992 1.01961 1.20802 0.93720 0.95496 1.00999 1.20951 1.00699 0.93677 1.02643 1.22704 0.94341 0.97455 1.00874 1.20809 0.98252 0.98782 0.97199 1.20881 0.80625 0.82589 0.85330 1.90612 1.69135 1.32093 1.52952 1.46093 1.36369 1.15601 1.38117 1.19937 0.86813 0.95717 0.85821 1.21804 0.98574 0.99207 0.96141 1.22491 0.95485 0.98140 0.84272 1.87833 1.61362 1.48729 1.35927 1.22917 0.92152 0.90740 1.01230 1.22414 0.98938 0.95834 1.00143 1.20588 0.92716 0.90224 0.90828 1.44233 1.07204 1.02982 1.78536 1.19448 0.85244 1.01807 1.32824 0.92595 1.25773 1.01226 0.98879 0.97899 1.70092 1.33565 1.10589 1.43129 0.85275 0.81053 0.77606 0.76901 1.19754 1.21901 1.21472 1.20906 0.94370 0.87502 0.94230 1.22284 0.97771 0.98485 0.98544 0.86931 0.86819 0.87362 0.90246 0.90267 0.91245 0.88269 0.85934 0.87064 0.75622 0.91176 0.91264 0.92163 0.93232 0.88483 0.93121 0.93386 0.91766 0.89813 0.92466 0.96858 0.94031 0.96864 0.94215 0.92307 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 14.12 66.64 0.94 -1.66 16 2 C -0.14 -2.76 9.83 23.42 0.23 -2.53 16 3 C -0.11 -2.26 5.98 -18.71 -0.11 -2.38 16 4 C -0.12 -1.86 8.56 71.24 0.61 -1.25 16 5 C -0.14 -3.21 8.45 24.51 0.21 -3.01 16 6 C -0.11 -2.44 5.80 29.10 0.17 -2.27 16 7 C 0.52 14.98 7.15 87.66 0.63 15.60 16 8 O -0.57 -20.29 12.28 -3.01 -0.04 -20.33 16 9 N -0.71 -20.06 3.35 -422.80 -1.42 -21.48 16 10 C 0.20 6.48 0.35 3.63 0.00 6.48 16 11 C -0.12 -3.62 4.46 30.59 0.14 -3.48 16 12 C 0.07 1.89 5.48 71.98 0.39 2.28 16 13 O -0.42 -11.44 10.70 -148.98 -1.59 -13.04 16 14 C 0.03 0.48 11.01 113.37 1.25 1.72 16 15 C -0.13 -4.53 4.64 30.67 0.14 -4.38 16 16 C 0.18 7.93 4.98 86.36 0.43 8.35 16 17 N -0.61 -29.39 2.98 -698.26 -2.08 -31.47 16 18 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 19 H 0.06 3.06 7.85 -2.91 -0.02 3.03 16 20 C -0.04 -2.27 5.05 84.86 0.43 -1.84 16 21 N -0.93 -51.99 11.05 21.65 0.24 -51.75 16 22 Si 0.96 44.13 29.57 68.60 2.03 46.16 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 C 0.16 6.66 6.28 86.51 0.54 7.20 16 27 C -0.13 -4.86 4.64 30.82 0.14 -4.71 16 28 H 0.11 1.39 6.05 -2.91 -0.02 1.37 16 29 H 0.11 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.11 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.08 1.03 6.67 -2.39 -0.02 1.02 16 32 H 0.08 0.97 6.18 -2.39 -0.01 0.95 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 2.66 8.05 -2.91 -0.02 2.64 16 35 H 0.12 2.03 5.74 -2.39 -0.01 2.02 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.41 10.33 7.36 -92.71 -0.68 9.64 16 38 H 0.07 2.44 6.21 -2.39 -0.01 2.43 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.06 1.46 6.22 -2.39 -0.01 1.44 16 41 H 0.05 1.23 7.71 -2.38 -0.02 1.21 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.08 2.36 6.29 -2.39 -0.02 2.35 16 47 H 0.06 2.89 6.10 -2.39 -0.01 2.88 16 48 H 0.01 0.58 7.00 -2.39 -0.02 0.57 16 49 H 0.25 13.60 8.31 -92.70 -0.77 12.83 16 50 H 0.01 0.58 7.66 -2.38 -0.02 0.56 16 51 H 0.04 1.75 7.93 -2.39 -0.02 1.73 16 52 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.07 2.69 6.18 -2.39 -0.01 2.68 16 Total: -1.00 -66.32 406.38 4.29 -62.03 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.21 Total: 29.18 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.94 Total: 0.69 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -3.26 Total: -104.70 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.63 Total: -33.36 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.32 4.29 -62.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151241608.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.909 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds