Wall clock time and date at job start Tue Mar 31 2020 20:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47117 * 120.00257 * 2 1 4 4 C 1.50707 * 119.99921 * 0.02562 * 3 2 1 5 5 C 1.32867 * 119.99999 * 180.02562 * 3 2 1 6 6 C 1.50701 * 119.99651 * 174.25723 * 5 3 2 7 7 C 1.50706 * 109.46611 * 236.62117 * 6 5 3 8 8 O 1.21281 * 119.99802 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99760 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99982 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46274 * 60.02791 * 11 10 9 13 13 O 1.42896 * 109.47200 * 299.97836 * 12 11 10 14 14 C 1.42896 * 114.00454 * 179.97438 * 13 12 11 15 15 C 1.53043 * 109.46104 * 180.02562 * 11 10 9 16 16 C 1.53194 * 109.31292 * 58.65553 * 15 11 10 17 17 N 1.46923 * 108.77671 * 54.63644 * 16 15 11 18 18 C 1.36933 * 120.63239 * 126.36956 * 17 16 15 19 19 H 1.08003 * 120.00027 * 331.20111 * 18 17 16 20 20 C 1.38814 * 120.00193 * 150.92612 * 18 17 16 21 21 N 1.31624 * 119.99516 * 347.16453 * 20 18 17 22 22 Si 1.86797 * 120.00089 * 167.15864 * 20 18 17 23 23 H 1.48497 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46846 * 119.99998 * 22 20 18 25 25 H 1.48497 * 109.47394 * 239.99842 * 22 20 18 26 26 C 1.46925 * 118.73537 * 306.64075 * 17 16 15 27 27 C 1.52758 * 109.01051 * 53.31432 * 26 17 16 28 28 H 1.08004 * 119.99566 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00241 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99568 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46900 * 264.88261 * 4 3 2 32 32 H 1.09001 * 109.46740 * 24.87682 * 4 3 2 33 33 H 1.08999 * 109.47338 * 144.87641 * 4 3 2 34 34 H 1.07997 * 120.00138 * 354.25072 * 5 3 2 35 35 H 1.08999 * 109.47573 * 116.62593 * 6 5 3 36 36 H 1.08994 * 109.47716 * 356.62078 * 6 5 3 37 37 H 0.97001 * 120.00404 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.46997 * 60.00326 * 10 9 7 39 39 H 1.08998 * 109.47598 * 300.00708 * 10 9 7 40 40 H 1.09005 * 109.46599 * 59.97455 * 12 11 10 41 41 H 1.08993 * 109.47350 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.47456 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.46636 * 299.99894 * 14 13 12 44 44 H 1.09002 * 109.47237 * 59.99250 * 14 13 12 45 45 H 1.08997 * 109.49958 * 298.70317 * 15 11 10 46 46 H 1.09000 * 109.52544 * 178.61856 * 15 11 10 47 47 H 1.08999 * 109.58498 * 294.84617 * 16 15 11 48 48 H 1.08998 * 109.70436 * 174.49234 * 16 15 11 49 49 H 0.97003 * 119.99710 * 180.02562 * 21 20 18 50 50 H 1.09011 * 109.58802 * 173.14396 * 26 17 16 51 51 H 1.09003 * 109.59107 * 293.56976 * 26 17 16 52 52 H 1.08999 * 109.56845 * 185.55279 * 27 26 17 53 53 H 1.08996 * 109.38866 * 65.51001 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1465 2.5726 -0.1311 7 6 5.0741 2.4980 -1.3165 8 8 5.1186 1.4898 -1.9892 9 7 5.8535 3.5520 -1.6296 10 6 6.7557 3.4793 -2.7815 11 6 7.5206 4.7977 -2.9143 12 6 8.3359 5.0443 -1.6433 13 8 7.4563 5.1154 -0.5194 14 6 8.1204 5.3440 0.7250 15 6 8.4625 4.7217 -4.1181 16 6 7.6459 4.4411 -5.3835 17 7 6.5944 5.4603 -5.5035 18 6 6.4608 6.1930 -6.6525 19 1 7.3244 6.3913 -7.2700 20 6 5.2144 6.6763 -7.0266 21 7 4.1294 6.2293 -6.4305 22 14 5.0772 7.9609 -8.3758 23 1 6.4330 8.2939 -8.8819 24 1 4.2522 7.4244 -9.4879 25 1 4.4373 9.1849 -7.8307 26 6 5.6928 5.6825 -4.3648 27 6 6.5278 5.9454 -3.1129 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8686 -0.9353 -0.0004 31 1 1.2082 2.9399 -1.0228 32 1 0.3220 2.4276 0.4333 33 1 1.8573 3.3140 0.5918 34 1 3.9330 0.3434 0.0928 35 1 4.7274 2.7483 0.7743 36 1 3.4397 3.3900 -0.2737 37 1 5.8177 4.3585 -1.0918 38 1 6.1752 3.3029 -3.6871 39 1 7.4628 2.6623 -2.6383 40 1 9.0424 4.2266 -1.5006 41 1 8.8812 5.9833 -1.7379 42 1 7.3841 5.3853 1.5276 43 1 8.8222 4.5322 0.9167 44 1 8.6617 6.2890 0.6798 45 1 9.1841 3.9192 -3.9654 46 1 8.9900 5.6692 -4.2283 47 1 7.1908 3.4531 -5.3131 48 1 8.2961 4.4824 -6.2573 49 1 3.2584 6.5667 -6.6922 50 1 5.0563 6.5444 -4.5655 51 1 5.0752 4.7978 -4.2096 52 1 5.8723 6.0137 -2.2447 53 1 7.0730 6.8816 -3.2317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162418629.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:04 Heat of formation + Delta-G solvation = -48.849041 kcal Electronic energy + Delta-G solvation = -30725.675293 eV Core-core repulsion = 26791.050832 eV Total energy + Delta-G solvation = -3934.624460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.30566 -39.97295 -38.26003 -37.76681 -36.03875 -34.55066 -33.38971 -32.63376 -31.61640 -29.87284 -28.95001 -28.03062 -27.12914 -26.27282 -25.47148 -23.87690 -22.51836 -22.25334 -20.99186 -19.85471 -18.79227 -18.67970 -17.84816 -17.19354 -16.98172 -16.91126 -16.81243 -16.68826 -16.16167 -15.74126 -15.31120 -15.30087 -15.15593 -14.94531 -14.67863 -14.44093 -14.12344 -14.08891 -13.84433 -13.58450 -13.31747 -13.22625 -13.04678 -12.93222 -12.66080 -12.57201 -12.46277 -12.29298 -12.27403 -12.23938 -11.94732 -11.82405 -11.73725 -11.43087 -11.39039 -11.20481 -11.10365 -10.79922 -10.54652 -10.46184 -9.85396 -9.10367 -8.61971 -7.84335 -5.32956 0.44252 1.45955 1.47170 1.57879 1.77450 2.06629 2.43998 2.51836 2.93037 3.30750 3.68800 3.76222 3.76883 3.88976 3.99290 4.01376 4.10584 4.29744 4.35049 4.44676 4.47341 4.49503 4.53071 4.57920 4.59461 4.65214 4.69404 4.72816 4.75309 4.80602 4.87512 4.88972 4.93723 4.97632 4.99663 5.05057 5.12756 5.18737 5.26284 5.30363 5.38355 5.48965 5.52612 5.59842 5.65100 5.70435 5.79997 5.83408 6.05336 6.28917 6.42065 6.82041 7.17690 7.46111 7.88836 8.40507 9.21226 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.003481 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.733711 B = 8041.909786 C =10068.493231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.105 4.105 7 C 0.503 3.497 8 O -0.598 6.598 9 N -0.700 5.700 10 C 0.141 3.859 11 C -0.051 4.051 12 C 0.082 3.918 13 O -0.407 6.407 14 C 0.029 3.971 15 C -0.109 4.109 16 C 0.138 3.862 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.068 0.932 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.289 1.289 26 C 0.183 3.817 27 C -0.109 4.109 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.417 0.583 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.006 0.994 48 H 0.056 0.944 49 H 0.248 0.752 50 H 0.051 0.949 51 H -0.013 1.013 52 H 0.067 0.933 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -3.900 20.458 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.114 4.114 4 C -0.182 4.182 5 C -0.154 4.154 6 C -0.144 4.144 7 C 0.291 3.709 8 O -0.480 6.480 9 N -0.357 5.357 10 C 0.016 3.984 11 C -0.052 4.052 12 C 0.006 3.994 13 O -0.326 6.326 14 C -0.067 4.067 15 C -0.148 4.148 16 C 0.012 3.988 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.086 0.914 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.216 1.216 26 C 0.057 3.943 27 C -0.148 4.148 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.261 0.739 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.024 0.976 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.005 0.995 52 H 0.086 0.914 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.381 -4.535 19.934 20.721 hybrid contribution -0.192 0.641 -1.036 1.234 sum 3.190 -3.894 18.898 19.557 Atomic orbital electron populations 1.24644 0.95248 1.03171 0.98234 1.21988 0.96063 0.96001 1.01870 1.20832 0.94029 0.95385 1.01148 1.20966 1.00976 0.94055 1.02218 1.22763 0.94257 0.97752 1.00634 1.20764 0.98252 0.98417 0.96984 1.21202 0.80731 0.82606 0.86343 1.90657 1.69445 1.33266 1.54655 1.46200 1.40685 1.18075 1.30693 1.21180 0.92036 0.96914 0.88232 1.20690 0.95757 0.93962 0.94791 1.22542 0.91599 1.01075 0.84227 1.87499 1.35238 1.93581 1.16304 1.22902 0.98728 1.00048 0.85019 1.21845 0.96927 1.02837 0.93181 1.21079 0.90426 0.90473 0.96808 1.44292 1.35700 1.40685 1.12601 1.19586 0.92524 1.25948 1.00844 0.91400 1.25874 0.95203 1.02802 1.00985 1.70201 0.97299 1.45185 1.45708 0.85183 0.77819 0.78650 0.78664 1.18885 1.22284 1.21607 1.20446 0.90942 0.97580 0.85308 1.21862 0.97944 0.97113 0.97889 0.87261 0.86598 0.86889 0.92411 0.90092 0.89739 0.87637 0.85119 0.86883 0.73941 0.94631 0.92418 0.91940 0.91844 0.88189 0.93566 0.93367 0.89493 0.90832 0.97571 0.92510 0.94332 0.93107 0.99505 0.91441 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.12 66.64 0.94 -2.19 16 2 C -0.14 -3.07 9.83 23.43 0.23 -2.84 16 3 C -0.11 -2.67 5.98 -18.71 -0.11 -2.78 16 4 C -0.13 -2.46 8.56 71.24 0.61 -1.85 16 5 C -0.14 -3.40 8.45 24.51 0.21 -3.19 16 6 C -0.11 -2.40 5.81 29.10 0.17 -2.24 16 7 C 0.50 16.40 7.82 87.66 0.69 17.09 16 8 O -0.60 -25.23 16.03 -3.03 -0.05 -25.28 16 9 N -0.70 -21.35 4.63 -463.06 -2.14 -23.50 16 10 C 0.14 4.83 3.80 86.38 0.33 5.16 16 11 C -0.05 -1.54 0.51 -52.15 -0.03 -1.57 16 12 C 0.08 1.81 4.80 71.98 0.35 2.15 16 13 O -0.41 -8.36 6.73 -148.98 -1.00 -9.36 16 14 C 0.03 0.39 11.01 113.37 1.25 1.64 16 15 C -0.11 -3.35 4.91 30.67 0.15 -3.20 16 16 C 0.14 5.72 6.05 86.36 0.52 6.24 16 17 N -0.61 -30.84 3.00 -699.92 -2.10 -32.94 16 18 C -0.26 -14.36 9.59 84.03 0.81 -13.55 16 19 H 0.07 3.65 7.86 -2.91 -0.02 3.62 16 20 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 21 N -0.94 -56.91 11.03 21.65 0.24 -56.67 16 22 Si 0.97 45.50 29.57 68.60 2.03 47.53 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.18 8.93 4.79 86.22 0.41 9.34 16 27 C -0.11 -3.94 4.57 30.53 0.14 -3.80 16 28 H 0.11 1.75 6.05 -2.91 -0.02 1.73 16 29 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.11 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.30 6.18 -2.39 -0.01 1.28 16 33 H 0.08 1.35 6.66 -2.39 -0.02 1.33 16 34 H 0.11 2.79 8.05 -2.91 -0.02 2.77 16 35 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 2.31 5.72 -2.39 -0.01 2.30 16 37 H 0.42 11.02 4.70 -92.71 -0.44 10.58 16 38 H 0.04 1.57 4.99 -2.39 -0.01 1.56 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.01 0.28 6.69 -2.39 -0.02 0.27 16 48 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.05 2.85 6.01 -2.38 -0.01 2.83 16 51 H -0.01 -0.71 6.70 -2.39 -0.02 -0.73 16 52 H 0.07 2.24 6.49 -2.39 -0.02 2.23 16 53 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.11 405.98 4.51 -69.60 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.45 Total: 28.84 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 7.08 Total: 1.77 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.00 Total: -113.11 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.05 Total: -34.64 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -74.11 4.51 -69.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162418629.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.753 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds