Wall clock time and date at job start Tue Mar 31 2020 20:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99546 * 2 1 4 4 C 1.52999 * 109.47158 * 124.99858 * 3 2 1 5 5 C 1.50702 * 109.47258 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00115 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62909 * 179.97438 * 7 5 4 9 9 C 1.53193 * 108.77802 * 233.63207 * 8 7 5 10 10 C 1.53042 * 109.31405 * 305.36522 * 9 8 7 11 11 C 1.52999 * 109.45794 * 181.38471 * 10 9 8 12 12 H 1.09002 * 109.47945 * 299.99583 * 11 10 9 13 13 C 1.53099 * 109.47536 * 179.97438 * 11 10 9 14 14 C 1.53183 * 109.15899 * 182.39614 * 13 11 10 15 15 H 1.08997 * 109.54584 * 297.02268 * 14 13 11 16 16 N 1.46499 * 109.54036 * 176.84431 * 14 13 11 17 17 C 1.36932 * 119.99549 * 155.17886 * 16 14 13 18 18 H 1.08003 * 120.00354 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00011 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00154 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99635 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99668 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99848 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99841 * 21 19 17 25 25 C 1.53180 * 109.10936 * 56.93583 * 14 13 11 26 26 C 1.53109 * 109.15706 * 303.15106 * 25 14 13 27 27 O 1.42897 * 109.49249 * 60.02703 * 11 10 9 28 28 C 1.53044 * 109.52522 * 61.37180 * 10 9 8 29 29 C 1.46927 * 120.63476 * 0.02595 * 7 5 4 30 30 H 1.07994 * 120.00401 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99541 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00293 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47467 * 4.99880 * 3 2 1 34 34 H 1.08995 * 109.47060 * 244.99397 * 3 2 1 35 35 H 1.09001 * 109.47170 * 59.99306 * 4 3 2 36 36 H 1.09005 * 109.47313 * 299.99674 * 4 3 2 37 37 H 1.09009 * 109.58545 * 113.84590 * 8 7 5 38 38 H 1.08996 * 109.70344 * 353.49250 * 8 7 5 39 39 H 1.08998 * 109.49454 * 185.41217 * 9 8 7 40 40 H 1.08996 * 109.49666 * 65.32154 * 9 8 7 41 41 H 1.09003 * 109.46093 * 301.36196 * 10 9 8 42 42 H 1.08995 * 109.52630 * 62.49219 * 13 11 10 43 43 H 1.08995 * 109.57471 * 302.32991 * 13 11 10 44 44 H 0.96993 * 120.00302 * 335.17851 * 16 14 13 45 45 H 0.96998 * 119.99442 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.52523 * 62.96287 * 25 14 13 47 47 H 1.08996 * 109.52509 * 183.15774 * 25 14 13 48 48 H 1.08998 * 109.40390 * 297.49270 * 26 25 14 49 49 H 1.08996 * 109.49454 * 177.51059 * 26 25 14 50 50 H 1.09004 * 109.49689 * 58.57677 * 28 10 9 51 51 H 1.09000 * 109.49679 * 178.67916 * 28 10 9 52 52 H 1.09000 * 109.58594 * 246.15467 * 29 7 5 53 53 H 1.08997 * 109.58705 * 6.43756 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.7888 2.6381 1.1813 6 8 3.5702 3.4645 0.3210 7 7 4.7051 2.8872 2.1377 8 6 5.4485 4.1545 2.1503 9 6 6.9485 3.8459 2.1903 10 6 7.2455 2.9312 3.3808 11 6 8.7479 2.6488 3.4442 12 1 9.0652 2.1605 2.5227 13 6 9.0456 1.7343 4.6353 14 6 10.5573 1.5049 4.7276 15 1 10.9031 0.9886 3.8321 16 7 10.8584 0.6923 5.9088 17 6 12.0017 -0.0604 5.9486 18 1 12.6815 -0.0547 5.1095 19 6 12.2873 -0.8300 7.0681 20 7 13.3864 -1.5531 7.1066 21 14 11.1118 -0.8393 8.5197 22 1 11.4903 0.2372 9.4702 23 1 11.1839 -2.1539 9.2067 24 1 9.7267 -0.6085 8.0366 25 6 11.2639 2.8590 4.8435 26 6 10.8787 3.7309 3.6453 27 8 9.4581 3.8789 3.6006 28 6 6.4855 1.6132 3.2152 29 6 4.9806 1.8962 3.1868 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 3.7399 0.5067 1.0922 36 1 2.4771 1.2357 2.1131 37 1 5.1707 4.7324 3.0318 38 1 5.2168 4.7254 1.2512 39 1 7.5083 4.7751 2.2969 40 1 7.2422 3.3477 1.2664 41 1 6.9286 3.4198 4.3022 42 1 8.5400 0.7787 4.4963 43 1 8.6917 2.2034 5.5533 44 1 10.2481 0.6874 6.6626 45 1 13.5862 -2.0905 7.8890 46 1 10.9563 3.3527 5.7654 47 1 12.3432 2.7071 4.8532 48 1 11.2239 3.2568 2.7266 49 1 11.3434 4.7118 3.7449 50 1 6.7836 1.1361 2.2815 51 1 6.7158 0.9530 4.0514 52 1 4.6646 2.2895 4.1530 53 1 4.4378 0.9758 2.9717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186065618.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:07 Heat of formation + Delta-G solvation = -67.991496 kcal Electronic energy + Delta-G solvation = -29705.452545 eV Core-core repulsion = 25769.998005 eV Total energy + Delta-G solvation = -3935.454540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.62961 -39.44730 -37.58075 -35.72889 -35.25710 -33.93640 -32.30285 -31.87846 -30.66679 -30.02522 -29.78387 -26.30901 -24.89455 -23.91192 -23.52335 -22.56824 -21.70820 -20.53096 -20.16303 -19.92114 -19.08164 -17.66705 -17.38614 -16.31015 -16.12262 -15.98134 -15.85150 -15.32703 -14.75402 -14.57708 -14.42311 -14.24204 -13.99737 -13.87343 -13.77332 -13.58277 -13.33903 -13.08984 -12.85719 -12.71262 -12.59501 -12.44892 -12.24761 -11.58201 -11.55700 -11.41136 -11.37348 -11.33627 -11.13051 -11.03750 -10.92030 -10.74407 -10.68747 -10.41083 -10.16874 -10.04375 -9.84520 -9.69789 -9.65199 -9.27010 -8.94858 -8.90219 -7.32994 -5.82280 -3.18177 1.87726 2.36843 2.72577 3.32310 3.35616 3.40925 3.80220 4.13844 4.44757 4.50065 4.53341 4.54050 4.69260 4.76492 4.79488 4.86928 4.92387 5.03330 5.07135 5.11999 5.20309 5.23848 5.24465 5.32814 5.37497 5.44176 5.45851 5.49766 5.56901 5.58829 5.63652 5.67792 5.69124 5.77416 5.80146 5.83178 5.90144 5.96306 6.08061 6.13060 6.24468 6.25192 6.27448 6.30934 6.38521 6.47790 6.69104 6.90927 7.11594 7.44117 7.90706 7.93234 8.36745 9.14897 9.87524 10.07556 11.35944 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002353 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.995957 B =11896.499522 C =13369.885301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.514 3.486 6 O -0.545 6.545 7 N -0.612 5.612 8 C 0.110 3.890 9 C -0.124 4.124 10 C -0.077 4.077 11 C 0.102 3.898 12 H 0.056 0.944 13 C -0.157 4.157 14 C 0.182 3.818 15 H 0.054 0.946 16 N -0.747 5.747 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.172 4.172 26 C 0.065 3.935 27 O -0.383 6.383 28 C -0.134 4.134 29 C 0.108 3.892 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.072 0.928 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.085 7.999 -11.596 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.423 6.423 7 N -0.346 5.346 8 C -0.012 4.012 9 C -0.162 4.162 10 C -0.096 4.096 11 C 0.044 3.956 12 H 0.073 0.927 13 C -0.195 4.195 14 C 0.073 3.927 15 H 0.072 0.928 16 N -0.389 5.389 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.212 4.212 26 C -0.012 4.012 27 O -0.302 6.302 28 C -0.172 4.172 29 C -0.015 4.015 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.105 0.895 52 H 0.090 0.910 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.066 8.475 -12.081 26.546 hybrid contribution -0.317 -0.493 1.365 1.486 sum -22.382 7.982 -10.716 26.067 Atomic orbital electron populations 1.23889 0.95989 1.01909 1.01183 1.22985 0.96110 0.98379 0.99866 1.20510 0.97768 0.95416 0.98007 1.21668 0.99002 0.95770 1.01183 1.20727 0.79461 0.88974 0.80545 1.90686 1.65942 1.48462 1.37212 1.48199 1.39494 1.18676 1.28245 1.21642 0.91164 0.85221 1.03149 1.21896 0.94913 1.01100 0.98319 1.21102 0.93217 0.95861 0.99377 1.22002 0.91121 0.85347 0.97162 0.92650 1.22579 0.98501 0.99766 0.98683 1.20181 0.91065 0.90151 0.91347 0.92839 1.42767 1.25752 1.53882 1.16466 1.19065 0.97358 1.18532 1.02495 0.89266 1.24684 0.97271 0.99237 0.97975 1.69702 1.25446 1.32801 1.30112 0.86542 0.81031 0.77160 0.83718 1.21106 1.21738 1.20354 1.22894 1.02385 0.98022 0.97924 1.22581 0.80641 1.00259 0.97745 1.87815 1.18375 1.29750 1.94248 1.22025 0.93905 0.97623 1.03611 1.21791 0.96559 0.92162 0.91014 0.88558 0.88462 0.87225 0.90790 0.90199 0.88611 0.88785 0.91525 0.89067 0.89640 0.91719 0.90205 0.90780 0.91484 0.80643 0.93033 0.91874 0.90741 0.93685 0.89564 0.91067 0.89533 0.90972 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 29.01 0.42 -0.77 16 2 C -0.16 -1.00 9.52 -36.03 -0.34 -1.35 16 3 C -0.08 -0.60 4.95 -27.88 -0.14 -0.74 16 4 C -0.14 -0.95 4.03 -27.88 -0.11 -1.06 16 5 C 0.51 5.23 7.70 -10.99 -0.08 5.14 16 6 O -0.55 -7.53 15.40 5.56 0.09 -7.44 16 7 N -0.61 -5.53 2.97 -172.79 -0.51 -6.04 16 8 C 0.11 1.04 6.43 -3.71 -0.02 1.02 16 9 C -0.12 -1.20 5.23 -26.61 -0.14 -1.34 16 10 C -0.08 -0.76 1.95 -90.58 -0.18 -0.94 16 11 C 0.10 1.27 2.22 -26.68 -0.06 1.21 16 12 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 13 C -0.16 -2.28 4.47 -26.59 -0.12 -2.40 16 14 C 0.18 3.34 2.86 -67.74 -0.19 3.15 16 15 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 16 N -0.75 -17.07 4.93 -53.24 -0.26 -17.34 16 17 C -0.24 -6.73 10.41 -15.06 -0.16 -6.88 16 18 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -28.87 13.97 55.49 0.78 -28.09 16 21 Si 0.89 21.69 27.73 -169.99 -4.71 16.98 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 25 C -0.17 -2.89 5.73 -26.58 -0.15 -3.04 16 26 C 0.06 0.89 6.84 37.21 0.25 1.15 16 27 O -0.38 -5.27 9.71 -35.23 -0.34 -5.62 16 28 C -0.13 -1.11 5.04 -26.63 -0.13 -1.25 16 29 C 0.11 0.75 6.34 -3.73 -0.02 0.73 16 30 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 31 H 0.10 0.50 8.06 -52.49 -0.42 0.07 16 32 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.10 0.53 7.70 -51.93 -0.40 0.13 16 36 H 0.09 0.52 7.94 -51.93 -0.41 0.11 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.09 0.97 7.01 -51.93 -0.36 0.61 16 39 H 0.09 0.86 7.65 -51.93 -0.40 0.47 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.72 6.42 -51.93 -0.33 0.39 16 52 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 53 H 0.09 0.45 5.93 -51.93 -0.31 0.14 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -32.73 407.65 -9.64 -42.36 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -9.53 Total: 6.40 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.28 Total: -7.35 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.00 Total: -51.47 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.26 Total: -13.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.73 -9.64 -42.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186065618.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.627 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds