Wall clock time and date at job start Tue Mar 31 2020 20:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99546 * 2 1 4 4 C 1.52999 * 109.47158 * 124.99858 * 3 2 1 5 5 C 1.50702 * 109.47258 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00115 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62909 * 179.97438 * 7 5 4 9 9 C 1.53193 * 108.77802 * 233.63207 * 8 7 5 10 10 C 1.53042 * 109.31405 * 305.36522 * 9 8 7 11 11 C 1.52999 * 109.45794 * 181.38471 * 10 9 8 12 12 H 1.09002 * 109.47945 * 299.99583 * 11 10 9 13 13 C 1.53099 * 109.47536 * 179.97438 * 11 10 9 14 14 C 1.53183 * 109.15899 * 182.39614 * 13 11 10 15 15 H 1.08997 * 109.54584 * 297.02268 * 14 13 11 16 16 N 1.46499 * 109.54036 * 176.84431 * 14 13 11 17 17 C 1.36932 * 119.99549 * 155.17886 * 16 14 13 18 18 H 1.08003 * 120.00354 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00011 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00154 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99635 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99668 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99848 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99841 * 21 19 17 25 25 C 1.53180 * 109.10936 * 56.93583 * 14 13 11 26 26 C 1.53109 * 109.15706 * 303.15106 * 25 14 13 27 27 O 1.42897 * 109.49249 * 60.02703 * 11 10 9 28 28 C 1.53044 * 109.52522 * 61.37180 * 10 9 8 29 29 C 1.46927 * 120.63476 * 0.02595 * 7 5 4 30 30 H 1.07994 * 120.00401 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99541 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00293 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47467 * 4.99880 * 3 2 1 34 34 H 1.08995 * 109.47060 * 244.99397 * 3 2 1 35 35 H 1.09001 * 109.47170 * 59.99306 * 4 3 2 36 36 H 1.09005 * 109.47313 * 299.99674 * 4 3 2 37 37 H 1.09009 * 109.58545 * 113.84590 * 8 7 5 38 38 H 1.08996 * 109.70344 * 353.49250 * 8 7 5 39 39 H 1.08998 * 109.49454 * 185.41217 * 9 8 7 40 40 H 1.08996 * 109.49666 * 65.32154 * 9 8 7 41 41 H 1.09003 * 109.46093 * 301.36196 * 10 9 8 42 42 H 1.08995 * 109.52630 * 62.49219 * 13 11 10 43 43 H 1.08995 * 109.57471 * 302.32991 * 13 11 10 44 44 H 0.96993 * 120.00302 * 335.17851 * 16 14 13 45 45 H 0.96998 * 119.99442 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.52523 * 62.96287 * 25 14 13 47 47 H 1.08996 * 109.52509 * 183.15774 * 25 14 13 48 48 H 1.08998 * 109.40390 * 297.49270 * 26 25 14 49 49 H 1.08996 * 109.49454 * 177.51059 * 26 25 14 50 50 H 1.09004 * 109.49689 * 58.57677 * 28 10 9 51 51 H 1.09000 * 109.49679 * 178.67916 * 28 10 9 52 52 H 1.09000 * 109.58594 * 246.15467 * 29 7 5 53 53 H 1.08997 * 109.58705 * 6.43756 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.7888 2.6381 1.1813 6 8 3.5702 3.4645 0.3210 7 7 4.7051 2.8872 2.1377 8 6 5.4485 4.1545 2.1503 9 6 6.9485 3.8459 2.1903 10 6 7.2455 2.9312 3.3808 11 6 8.7479 2.6488 3.4442 12 1 9.0652 2.1605 2.5227 13 6 9.0456 1.7343 4.6353 14 6 10.5573 1.5049 4.7276 15 1 10.9031 0.9886 3.8321 16 7 10.8584 0.6923 5.9088 17 6 12.0017 -0.0604 5.9486 18 1 12.6815 -0.0547 5.1095 19 6 12.2873 -0.8300 7.0681 20 7 13.3864 -1.5531 7.1066 21 14 11.1118 -0.8393 8.5197 22 1 11.4903 0.2372 9.4702 23 1 11.1839 -2.1539 9.2067 24 1 9.7267 -0.6085 8.0366 25 6 11.2639 2.8590 4.8435 26 6 10.8787 3.7309 3.6453 27 8 9.4581 3.8789 3.6006 28 6 6.4855 1.6132 3.2152 29 6 4.9806 1.8962 3.1868 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 3.7399 0.5067 1.0922 36 1 2.4771 1.2357 2.1131 37 1 5.1707 4.7324 3.0318 38 1 5.2168 4.7254 1.2512 39 1 7.5083 4.7751 2.2969 40 1 7.2422 3.3477 1.2664 41 1 6.9286 3.4198 4.3022 42 1 8.5400 0.7787 4.4963 43 1 8.6917 2.2034 5.5533 44 1 10.2481 0.6874 6.6626 45 1 13.5862 -2.0905 7.8890 46 1 10.9563 3.3527 5.7654 47 1 12.3432 2.7071 4.8532 48 1 11.2239 3.2568 2.7266 49 1 11.3434 4.7118 3.7449 50 1 6.7836 1.1361 2.2815 51 1 6.7158 0.9530 4.0514 52 1 4.6646 2.2895 4.1530 53 1 4.4378 0.9758 2.9717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186065618.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:06 Heat of formation + Delta-G solvation = -87.695573 kcal Electronic energy + Delta-G solvation = -29706.306978 eV Core-core repulsion = 25769.998005 eV Total energy + Delta-G solvation = -3936.308972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.41828 -40.51844 -38.45229 -36.88148 -36.28926 -34.80451 -34.14104 -32.65586 -31.71646 -31.22695 -30.89990 -27.28127 -26.04113 -24.95107 -24.59112 -23.66791 -22.87606 -21.41004 -21.28602 -20.65511 -19.87378 -19.58008 -18.13764 -17.21576 -17.06735 -16.83048 -16.80119 -16.55604 -15.92527 -15.72247 -15.47950 -15.31860 -15.06887 -14.81825 -14.77344 -14.57606 -14.51977 -14.28990 -13.93415 -13.67290 -13.43041 -13.35721 -13.11977 -12.97383 -12.85559 -12.62727 -12.42883 -12.22044 -12.14321 -11.98773 -11.92181 -11.87476 -11.85415 -11.81928 -11.51995 -11.43256 -11.05440 -10.92066 -10.79209 -10.42377 -10.20458 -9.64280 -9.32563 -8.02727 -5.36501 1.37414 1.40371 1.41423 1.48822 1.62900 2.05963 2.48332 2.80355 3.28075 3.41472 3.52206 3.76511 3.81124 3.95867 4.00055 4.01126 4.12240 4.16739 4.18090 4.23893 4.26846 4.34883 4.38896 4.41946 4.46851 4.49529 4.58668 4.62638 4.71520 4.74560 4.80985 4.86448 4.88262 4.89750 4.94566 4.99460 5.02010 5.09373 5.12149 5.16520 5.21205 5.25696 5.32144 5.44523 5.49332 5.60619 5.75745 5.77905 5.91816 6.21044 6.34193 6.42584 7.07174 7.17449 7.82967 8.02993 9.18696 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002353 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.995957 B =11896.499522 C =13369.885301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.078 4.078 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.591 6.591 7 N -0.611 5.611 8 C 0.112 3.888 9 C -0.115 4.115 10 C -0.070 4.070 11 C 0.104 3.896 12 H 0.055 0.945 13 C -0.145 4.145 14 C 0.172 3.828 15 H 0.039 0.961 16 N -0.749 5.749 17 C -0.229 4.229 18 H 0.054 0.946 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.246 1.246 25 C -0.165 4.165 26 C 0.072 3.928 27 O -0.385 6.385 28 C -0.131 4.131 29 C 0.107 3.893 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.366 0.634 45 H 0.257 0.743 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.106 0.894 50 H 0.068 0.932 51 H 0.092 0.908 52 H 0.086 0.914 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.832 8.053 -10.788 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.177 4.177 3 C -0.115 4.115 4 C -0.169 4.169 5 C 0.298 3.702 6 O -0.472 6.472 7 N -0.344 5.344 8 C -0.011 4.011 9 C -0.153 4.153 10 C -0.089 4.089 11 C 0.046 3.954 12 H 0.073 0.927 13 C -0.183 4.183 14 C 0.064 3.936 15 H 0.057 0.943 16 N -0.392 5.392 17 C -0.360 4.360 18 H 0.072 0.928 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.784 3.216 22 H -0.209 1.209 23 H -0.224 1.224 24 H -0.170 1.170 25 C -0.206 4.206 26 C -0.005 4.005 27 O -0.304 6.304 28 C -0.169 4.169 29 C -0.015 4.015 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.124 0.876 50 H 0.087 0.913 51 H 0.111 0.889 52 H 0.104 0.896 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.848 8.560 -11.288 28.602 hybrid contribution 0.606 -0.459 1.006 1.261 sum -24.241 8.101 -10.283 27.550 Atomic orbital electron populations 1.24039 0.96089 1.02436 1.00632 1.23003 0.96194 0.98151 1.00319 1.20443 0.97623 0.95703 0.97777 1.21696 0.99028 0.94395 1.01739 1.21333 0.79435 0.89566 0.79889 1.90667 1.67417 1.50117 1.39009 1.48307 1.38877 1.18794 1.28388 1.21566 0.91007 0.85683 1.02811 1.21780 0.94979 1.00724 0.97826 1.21071 0.91355 0.96937 0.99509 1.22085 0.92688 0.84565 0.96071 0.92686 1.22474 0.95104 1.00935 0.99820 1.20447 0.94206 0.89912 0.89045 0.94274 1.42761 1.24343 1.53972 1.18090 1.18998 0.97946 1.18048 1.01029 0.92836 1.25537 0.99364 0.99504 1.01403 1.69892 1.28009 1.34499 1.31107 0.85387 0.80125 0.76654 0.79468 1.20862 1.22371 1.17046 1.22753 1.00677 0.97730 0.99425 1.22539 0.81011 1.00670 0.96300 1.87834 1.18126 1.30380 1.94091 1.22018 0.94606 0.96569 1.03727 1.21977 0.95814 0.92755 0.90929 0.88842 0.87227 0.85854 0.92293 0.91774 0.86560 0.86647 0.90440 0.90815 0.90127 0.92605 0.89830 0.89734 0.91116 0.80094 0.93407 0.92273 0.93095 0.93066 0.87555 0.91324 0.88937 0.89623 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 14.32 67.78 0.97 -1.10 16 2 C -0.16 -1.75 9.52 25.64 0.24 -1.50 16 3 C -0.08 -1.10 4.95 29.85 0.15 -0.96 16 4 C -0.13 -1.48 4.03 29.85 0.12 -1.36 16 5 C 0.51 9.60 7.70 87.66 0.67 10.28 16 6 O -0.59 -16.40 15.40 -3.01 -0.05 -16.44 16 7 N -0.61 -9.67 2.97 -818.97 -2.43 -12.11 16 8 C 0.11 1.94 6.43 86.36 0.56 2.50 16 9 C -0.11 -2.02 5.23 30.67 0.16 -1.85 16 10 C -0.07 -1.20 1.95 -10.77 -0.02 -1.22 16 11 C 0.10 2.34 2.22 30.63 0.07 2.41 16 12 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 13 C -0.15 -3.86 4.47 30.69 0.14 -3.72 16 14 C 0.17 6.16 2.86 45.11 0.13 6.29 16 15 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 16 N -0.75 -33.60 4.93 -322.37 -1.59 -35.19 16 17 C -0.23 -12.80 10.41 84.04 0.88 -11.92 16 18 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.98 -62.56 13.97 21.65 0.30 -62.26 16 21 Si 0.96 44.40 27.73 68.60 1.90 46.31 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 25 C -0.17 -5.47 5.73 30.69 0.18 -5.30 16 26 C 0.07 1.86 6.84 72.02 0.49 2.35 16 27 O -0.39 -9.74 9.71 -148.98 -1.45 -11.19 16 28 C -0.13 -1.74 5.04 30.66 0.15 -1.58 16 29 C 0.11 1.09 6.34 86.35 0.55 1.64 16 30 H 0.09 1.02 7.84 -2.91 -0.02 1.00 16 31 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.12 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.06 1.00 7.75 -2.39 -0.02 0.98 16 34 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.12 0.88 7.70 -2.39 -0.02 0.86 16 36 H 0.12 0.86 7.94 -2.38 -0.02 0.84 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.57 7.01 -2.39 -0.02 1.55 16 39 H 0.08 1.50 7.65 -2.39 -0.02 1.48 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.09 6.54 -2.39 -0.02 2.08 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.37 15.63 5.66 -92.71 -0.52 15.11 16 45 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.09 1.17 6.42 -2.39 -0.02 1.16 16 52 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.11 0.63 5.93 -2.39 -0.01 0.62 16 Total: -1.00 -73.12 407.65 2.87 -70.25 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.29 Total: 29.07 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.90 Total: -8.45 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.72 Total: -109.55 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.49 Total: -27.63 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.31 kcal Total: -73.12 2.87 -70.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186065618.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.445 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds