Wall clock time and date at job start Tue Mar 31 2020 20:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00168 * 2 1 4 4 C 1.53003 * 109.46918 * 125.00054 * 3 2 1 5 5 C 1.50701 * 109.46918 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00258 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99883 * 179.97438 * 5 4 3 8 8 C 1.46931 * 120.63173 * 179.97438 * 7 5 4 9 9 C 1.53187 * 108.77858 * 233.63340 * 8 7 5 10 10 C 1.53036 * 109.33909 * 305.34763 * 9 8 7 11 11 C 1.52999 * 109.46063 * 181.40144 * 10 9 8 12 12 H 1.08992 * 109.48405 * 59.97978 * 11 10 9 13 13 O 1.42902 * 109.48220 * 299.94164 * 11 10 9 14 14 C 1.42902 * 114.09822 * 178.86006 * 13 11 10 15 15 C 1.53091 * 109.41659 * 61.16189 * 14 13 11 16 16 C 1.53179 * 109.16134 * 302.38686 * 15 14 13 17 17 C 1.53094 * 109.48192 * 180.02562 * 11 10 9 18 18 H 1.09001 * 109.52334 * 57.62008 * 17 11 10 19 19 N 1.46506 * 109.52290 * 297.49669 * 17 11 10 20 20 C 1.36938 * 120.00207 * 154.99623 * 19 17 11 21 21 H 1.08003 * 119.99673 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00013 * 180.02562 * 20 19 17 23 23 N 1.31629 * 120.00056 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00153 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.46939 * 90.00043 * 24 22 20 26 26 H 1.48498 * 109.46821 * 210.00171 * 24 22 20 27 27 H 1.48498 * 109.46899 * 329.99881 * 24 22 20 28 28 C 1.53109 * 109.50477 * 61.34678 * 10 9 8 29 29 C 1.46925 * 120.63360 * 0.02562 * 7 5 4 30 30 H 1.07993 * 120.00293 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99607 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.00100 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.47347 * 4.99714 * 3 2 1 34 34 H 1.08999 * 109.47079 * 244.99743 * 3 2 1 35 35 H 1.08993 * 109.47561 * 60.00209 * 4 3 2 36 36 H 1.08999 * 109.46993 * 299.99742 * 4 3 2 37 37 H 1.09004 * 109.58377 * 113.84299 * 8 7 5 38 38 H 1.09007 * 109.58589 * 353.42421 * 8 7 5 39 39 H 1.09002 * 109.49796 * 65.31697 * 9 8 7 40 40 H 1.09000 * 109.49812 * 185.38420 * 9 8 7 41 41 H 1.09003 * 109.46509 * 301.36375 * 10 9 8 42 42 H 1.09000 * 109.47926 * 301.17156 * 14 13 11 43 43 H 1.08998 * 109.48771 * 181.15094 * 14 13 11 44 44 H 1.08998 * 109.52121 * 182.48593 * 15 14 13 45 45 H 1.08996 * 109.57684 * 62.32617 * 15 14 13 46 46 H 1.09000 * 109.54609 * 297.11902 * 16 15 14 47 47 H 1.08997 * 109.54283 * 176.84287 * 16 15 14 48 48 H 0.96996 * 119.99587 * 335.00278 * 19 17 11 49 49 H 0.96991 * 119.99815 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.48980 * 178.70051 * 28 10 9 51 51 H 1.08999 * 109.51108 * 58.63043 * 28 10 9 52 52 H 1.08995 * 109.58986 * 246.15399 * 29 7 5 53 53 H 1.09003 * 109.58612 * 6.58493 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7891 2.6378 1.1813 6 8 3.5712 3.4639 0.3204 7 7 4.7055 2.8868 2.1376 8 6 5.4490 4.1540 2.1502 9 6 6.9489 3.8453 2.1902 10 6 7.2466 2.9309 3.3807 11 6 8.7491 2.6490 3.4437 12 1 9.2904 3.5876 3.5619 13 8 9.1648 2.0077 2.2363 14 6 10.5636 1.7212 2.1795 15 6 10.9348 0.7691 3.3194 16 6 10.5440 1.4081 4.6556 17 6 9.0473 1.7337 4.6341 18 1 8.4740 0.8118 4.5374 19 7 8.6767 2.4124 5.8785 20 6 8.3604 1.6787 6.9906 21 1 8.3846 0.5997 6.9505 22 6 8.0087 2.3217 8.1694 23 7 7.7051 1.6165 9.2385 24 14 7.9661 4.1880 8.2385 25 1 6.6109 4.6663 7.8647 26 1 8.2880 4.6397 9.6160 27 1 8.9656 4.7413 7.2898 28 6 6.4857 1.6126 3.2155 29 6 4.9809 1.8958 3.1868 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7400 0.5065 1.0921 36 1 2.4772 1.2355 2.1130 37 1 5.1712 4.7319 3.0318 38 1 5.2168 4.7229 1.2498 39 1 7.2426 3.3470 1.2663 40 1 7.5089 4.7744 2.2963 41 1 6.9300 3.4196 4.3021 42 1 11.1288 2.6477 2.2810 43 1 10.8006 1.2538 1.2238 44 1 12.0089 0.5843 3.3045 45 1 10.4013 -0.1734 3.1964 46 1 11.1149 2.3249 4.8022 47 1 10.7540 0.7122 5.4678 48 1 8.6552 3.3815 5.9145 49 1 7.4590 2.0659 10.0621 50 1 6.7159 0.9525 4.0518 51 1 6.7836 1.1348 2.2822 52 1 4.6649 2.2890 4.1529 53 1 4.4399 0.9745 2.9703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186123213.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:47 Heat of formation + Delta-G solvation = -65.295209 kcal Electronic energy + Delta-G solvation = -30817.440217 eV Core-core repulsion = 26882.102598 eV Total energy + Delta-G solvation = -3935.337620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.39072 -39.40927 -37.22075 -35.54105 -35.10903 -33.60857 -32.44169 -31.68580 -30.85686 -30.38137 -28.67515 -26.14981 -24.78499 -24.09387 -23.21224 -22.46938 -21.64670 -20.43239 -19.99126 -19.63049 -18.74655 -17.80816 -17.16431 -16.05543 -15.87282 -15.82987 -15.51535 -15.16477 -14.82043 -14.56673 -14.22268 -14.07476 -13.84122 -13.66976 -13.62480 -13.42291 -13.13694 -12.83981 -12.63687 -12.61449 -12.44589 -12.16777 -11.92018 -11.77918 -11.30910 -11.27296 -11.23498 -11.18197 -11.11341 -11.04384 -10.75289 -10.58317 -10.48511 -10.30077 -10.13036 -9.94100 -9.76451 -9.66169 -9.52323 -9.07941 -8.92292 -8.57594 -7.34364 -5.84187 -3.20375 2.03130 2.63244 3.02925 3.30471 3.32957 3.39855 3.97017 4.39037 4.51643 4.70459 4.78982 4.85508 4.88418 4.95233 5.04267 5.10219 5.12023 5.17914 5.22666 5.29978 5.33647 5.38461 5.45084 5.49184 5.54619 5.56560 5.61160 5.61982 5.68091 5.76222 5.77806 5.83482 5.93742 5.95171 5.96838 6.01239 6.11100 6.15093 6.22458 6.26618 6.39255 6.40876 6.41835 6.53955 6.61501 6.65697 6.74771 6.87776 7.41998 7.46004 7.91074 8.17416 8.34399 9.11828 9.84476 10.03578 11.33963 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010472 B = 0.003355 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.132441 B = 8343.613954 C = 9519.421464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.514 3.486 6 O -0.552 6.552 7 N -0.608 5.608 8 C 0.111 3.889 9 C -0.126 4.126 10 C -0.071 4.071 11 C 0.089 3.911 12 H 0.051 0.949 13 O -0.376 6.376 14 C 0.063 3.937 15 C -0.154 4.154 16 C -0.141 4.141 17 C 0.157 3.843 18 H 0.068 0.932 19 N -0.742 5.742 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.278 1.278 28 C -0.124 4.124 29 C 0.104 3.896 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.360 0.640 49 H 0.260 0.740 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.074 0.926 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -1.096 -17.366 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C -0.116 4.116 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.431 6.431 7 N -0.341 5.341 8 C -0.012 4.012 9 C -0.164 4.164 10 C -0.090 4.090 11 C 0.031 3.969 12 H 0.069 0.931 13 O -0.294 6.294 14 C -0.014 4.014 15 C -0.192 4.192 16 C -0.181 4.181 17 C 0.048 3.952 18 H 0.086 0.914 19 N -0.386 5.386 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.710 3.290 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.162 4.162 29 C -0.018 4.018 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.193 0.807 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.093 0.907 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.764 -0.884 -17.789 18.437 hybrid contribution 0.469 1.293 0.731 1.557 sum -4.295 0.409 -17.058 17.595 Atomic orbital electron populations 1.23870 0.95990 1.01837 1.01453 1.22997 0.96100 0.98437 0.99624 1.20506 0.97770 0.95301 0.98053 1.21654 0.98957 0.95921 1.01066 1.20680 0.79519 0.88897 0.80582 1.90664 1.66331 1.48594 1.37470 1.48178 1.39084 1.18631 1.28172 1.21612 0.91291 0.85408 1.02853 1.21929 0.94809 0.99947 0.99740 1.21123 0.92826 0.96283 0.98718 1.22379 0.94704 0.94861 0.84950 0.93112 1.87876 1.23419 1.80041 1.38102 1.22496 0.82627 0.97656 0.98588 1.22212 1.00977 0.99763 0.96249 1.22326 0.99304 1.00594 0.95913 1.20828 0.93076 0.95724 0.85620 0.91444 1.42681 1.83145 1.04378 1.08363 1.19004 1.38221 0.92275 0.87542 0.89207 1.24638 1.01496 0.96933 0.95756 1.69691 1.52630 1.34073 1.01582 0.86631 0.77855 0.87552 0.76957 1.21003 1.21797 1.20403 1.21912 0.92891 0.97919 1.03444 1.21878 0.97427 0.91726 0.90804 0.88527 0.88588 0.87259 0.90853 0.90290 0.88643 0.88758 0.91634 0.89301 0.90824 0.91244 0.89133 0.93823 0.89602 0.91830 0.91399 0.92796 0.91230 0.80741 0.93026 0.89286 0.91153 0.90728 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 29.02 0.42 -1.11 16 2 C -0.15 -1.27 9.52 -36.02 -0.34 -1.61 16 3 C -0.08 -0.76 4.95 -27.88 -0.14 -0.90 16 4 C -0.14 -1.32 4.03 -27.88 -0.11 -1.43 16 5 C 0.51 6.75 7.70 -10.99 -0.08 6.67 16 6 O -0.55 -9.00 15.39 5.56 0.09 -8.92 16 7 N -0.61 -7.69 2.97 -172.79 -0.51 -8.21 16 8 C 0.11 1.41 6.43 -3.71 -0.02 1.39 16 9 C -0.13 -1.60 5.19 -26.62 -0.14 -1.74 16 10 C -0.07 -1.01 1.91 -90.55 -0.17 -1.18 16 11 C 0.09 1.35 1.94 -26.68 -0.05 1.30 16 12 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 13 O -0.38 -5.36 9.12 -35.23 -0.32 -5.68 16 14 C 0.06 0.78 6.84 37.20 0.25 1.03 16 15 C -0.15 -2.00 6.14 -26.59 -0.16 -2.16 16 16 C -0.14 -2.32 5.61 -26.55 -0.15 -2.47 16 17 C 0.16 2.76 2.10 -67.79 -0.14 2.62 16 18 H 0.07 1.25 6.22 -51.93 -0.32 0.93 16 19 N -0.74 -15.87 4.29 -53.28 -0.23 -16.10 16 20 C -0.24 -6.25 10.42 -15.06 -0.16 -6.41 16 21 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -28.01 13.97 55.49 0.78 -27.24 16 24 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 28 C -0.12 -1.65 4.88 -26.60 -0.13 -1.78 16 29 C 0.10 1.23 6.34 -3.73 -0.02 1.21 16 30 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 32 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.07 0.78 7.75 -51.93 -0.40 0.37 16 34 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.09 0.82 7.94 -51.93 -0.41 0.40 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.19 7.01 -51.92 -0.36 0.83 16 39 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.44 7.62 -51.93 -0.40 1.04 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.36 7.69 5.59 -40.82 -0.23 7.46 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.09 1.33 6.31 -51.93 -0.33 1.01 16 51 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 52 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 53 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -30.70 405.41 -9.52 -40.22 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -9.46 Total: 9.97 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.26 Total: -6.47 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.03 Total: -51.54 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.24 Total: -14.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.70 -9.52 -40.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186123213.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.071 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds