Wall clock time and date at job start Tue Mar 31 2020 20:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00168 * 2 1 4 4 C 1.53003 * 109.46918 * 125.00054 * 3 2 1 5 5 C 1.50701 * 109.46918 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00258 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99883 * 179.97438 * 5 4 3 8 8 C 1.46931 * 120.63173 * 179.97438 * 7 5 4 9 9 C 1.53187 * 108.77858 * 233.63340 * 8 7 5 10 10 C 1.53036 * 109.33909 * 305.34763 * 9 8 7 11 11 C 1.52999 * 109.46063 * 181.40144 * 10 9 8 12 12 H 1.08992 * 109.48405 * 59.97978 * 11 10 9 13 13 O 1.42902 * 109.48220 * 299.94164 * 11 10 9 14 14 C 1.42902 * 114.09822 * 178.86006 * 13 11 10 15 15 C 1.53091 * 109.41659 * 61.16189 * 14 13 11 16 16 C 1.53179 * 109.16134 * 302.38686 * 15 14 13 17 17 C 1.53094 * 109.48192 * 180.02562 * 11 10 9 18 18 H 1.09001 * 109.52334 * 57.62008 * 17 11 10 19 19 N 1.46506 * 109.52290 * 297.49669 * 17 11 10 20 20 C 1.36938 * 120.00207 * 154.99623 * 19 17 11 21 21 H 1.08003 * 119.99673 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00013 * 180.02562 * 20 19 17 23 23 N 1.31629 * 120.00056 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00153 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.46939 * 90.00043 * 24 22 20 26 26 H 1.48498 * 109.46821 * 210.00171 * 24 22 20 27 27 H 1.48498 * 109.46899 * 329.99881 * 24 22 20 28 28 C 1.53109 * 109.50477 * 61.34678 * 10 9 8 29 29 C 1.46925 * 120.63360 * 0.02562 * 7 5 4 30 30 H 1.07993 * 120.00293 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99607 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.00100 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.47347 * 4.99714 * 3 2 1 34 34 H 1.08999 * 109.47079 * 244.99743 * 3 2 1 35 35 H 1.08993 * 109.47561 * 60.00209 * 4 3 2 36 36 H 1.08999 * 109.46993 * 299.99742 * 4 3 2 37 37 H 1.09004 * 109.58377 * 113.84299 * 8 7 5 38 38 H 1.09007 * 109.58589 * 353.42421 * 8 7 5 39 39 H 1.09002 * 109.49796 * 65.31697 * 9 8 7 40 40 H 1.09000 * 109.49812 * 185.38420 * 9 8 7 41 41 H 1.09003 * 109.46509 * 301.36375 * 10 9 8 42 42 H 1.09000 * 109.47926 * 301.17156 * 14 13 11 43 43 H 1.08998 * 109.48771 * 181.15094 * 14 13 11 44 44 H 1.08998 * 109.52121 * 182.48593 * 15 14 13 45 45 H 1.08996 * 109.57684 * 62.32617 * 15 14 13 46 46 H 1.09000 * 109.54609 * 297.11902 * 16 15 14 47 47 H 1.08997 * 109.54283 * 176.84287 * 16 15 14 48 48 H 0.96996 * 119.99587 * 335.00278 * 19 17 11 49 49 H 0.96991 * 119.99815 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.48980 * 178.70051 * 28 10 9 51 51 H 1.08999 * 109.51108 * 58.63043 * 28 10 9 52 52 H 1.08995 * 109.58986 * 246.15399 * 29 7 5 53 53 H 1.09003 * 109.58612 * 6.58493 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7891 2.6378 1.1813 6 8 3.5712 3.4639 0.3204 7 7 4.7055 2.8868 2.1376 8 6 5.4490 4.1540 2.1502 9 6 6.9489 3.8453 2.1902 10 6 7.2466 2.9309 3.3807 11 6 8.7491 2.6490 3.4437 12 1 9.2904 3.5876 3.5619 13 8 9.1648 2.0077 2.2363 14 6 10.5636 1.7212 2.1795 15 6 10.9348 0.7691 3.3194 16 6 10.5440 1.4081 4.6556 17 6 9.0473 1.7337 4.6341 18 1 8.4740 0.8118 4.5374 19 7 8.6767 2.4124 5.8785 20 6 8.3604 1.6787 6.9906 21 1 8.3846 0.5997 6.9505 22 6 8.0087 2.3217 8.1694 23 7 7.7051 1.6165 9.2385 24 14 7.9661 4.1880 8.2385 25 1 6.6109 4.6663 7.8647 26 1 8.2880 4.6397 9.6160 27 1 8.9656 4.7413 7.2898 28 6 6.4857 1.6126 3.2155 29 6 4.9809 1.8958 3.1868 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7400 0.5065 1.0921 36 1 2.4772 1.2355 2.1130 37 1 5.1712 4.7319 3.0318 38 1 5.2168 4.7229 1.2498 39 1 7.2426 3.3470 1.2663 40 1 7.5089 4.7744 2.2963 41 1 6.9300 3.4196 4.3021 42 1 11.1288 2.6477 2.2810 43 1 10.8006 1.2538 1.2238 44 1 12.0089 0.5843 3.3045 45 1 10.4013 -0.1734 3.1964 46 1 11.1149 2.3249 4.8022 47 1 10.7540 0.7122 5.4678 48 1 8.6552 3.3815 5.9145 49 1 7.4590 2.0659 10.0621 50 1 6.7159 0.9525 4.0518 51 1 6.7836 1.1348 2.2822 52 1 4.6649 2.2890 4.1529 53 1 4.4399 0.9745 2.9703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186123213.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:46 Heat of formation + Delta-G solvation = -82.701233 kcal Electronic energy + Delta-G solvation = -30818.194999 eV Core-core repulsion = 26882.102598 eV Total energy + Delta-G solvation = -3936.092402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.47334 -40.57166 -38.28388 -36.72452 -36.28170 -34.71899 -34.12859 -32.80528 -32.27393 -31.24231 -30.09069 -27.24092 -26.00958 -25.38003 -24.27970 -23.79568 -22.94762 -21.53852 -20.94851 -20.65151 -19.78908 -19.67410 -18.14868 -17.17751 -17.07586 -16.82979 -16.72911 -16.29982 -16.01195 -15.91840 -15.35377 -15.29859 -15.02957 -14.75801 -14.70460 -14.58602 -14.42094 -14.35555 -13.89121 -13.64408 -13.40752 -13.26900 -13.16670 -12.95960 -12.85227 -12.67687 -12.48281 -12.23532 -12.10206 -12.04513 -11.95771 -11.86848 -11.82867 -11.74025 -11.55450 -11.36532 -11.09201 -10.87156 -10.76810 -10.26001 -10.20234 -9.64104 -9.25360 -7.98057 -5.30762 1.39384 1.40600 1.41377 1.48597 1.62259 2.05813 2.50636 2.84197 3.33780 3.49485 3.60320 3.65343 3.82596 3.91084 3.99165 4.06634 4.14306 4.17838 4.18573 4.24424 4.25797 4.32710 4.35919 4.44798 4.46867 4.49373 4.61286 4.66416 4.70570 4.76529 4.82741 4.86979 4.89919 4.94262 5.00953 5.02564 5.06825 5.09039 5.12205 5.16381 5.21891 5.29989 5.36487 5.49408 5.54996 5.60297 5.77648 5.80848 5.92197 6.21664 6.36533 6.42506 7.11244 7.15992 7.86221 8.05409 9.23443 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010472 B = 0.003355 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.132441 B = 8343.613954 C = 9519.421464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.075 4.075 4 C -0.131 4.131 5 C 0.510 3.490 6 O -0.588 6.588 7 N -0.607 5.607 8 C 0.109 3.891 9 C -0.113 4.113 10 C -0.072 4.072 11 C 0.101 3.899 12 H 0.055 0.945 13 O -0.379 6.379 14 C 0.059 3.941 15 C -0.145 4.145 16 C -0.139 4.139 17 C 0.154 3.846 18 H 0.055 0.945 19 N -0.741 5.741 20 C -0.214 4.214 21 H 0.057 0.943 22 C -0.059 4.059 23 N -0.984 5.984 24 Si 0.944 3.056 25 H -0.277 1.277 26 H -0.303 1.303 27 H -0.254 1.254 28 C -0.117 4.117 29 C 0.108 3.892 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.363 0.637 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.068 0.932 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -0.720 -19.405 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.177 4.177 3 C -0.113 4.113 4 C -0.170 4.170 5 C 0.300 3.700 6 O -0.470 6.470 7 N -0.340 5.340 8 C -0.013 4.013 9 C -0.151 4.151 10 C -0.090 4.090 11 C 0.043 3.957 12 H 0.072 0.928 13 O -0.297 6.297 14 C -0.017 4.017 15 C -0.184 4.184 16 C -0.180 4.180 17 C 0.046 3.954 18 H 0.073 0.927 19 N -0.385 5.385 20 C -0.345 4.345 21 H 0.075 0.925 22 C -0.250 4.250 23 N -0.635 5.635 24 Si 0.772 3.228 25 H -0.203 1.203 26 H -0.231 1.231 27 H -0.179 1.179 28 C -0.155 4.155 29 C -0.015 4.015 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.197 0.803 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.362 -0.513 -19.886 20.365 hybrid contribution 0.399 1.071 1.303 1.733 sum -3.963 0.558 -18.583 19.009 Atomic orbital electron populations 1.24038 0.96031 1.02475 1.00590 1.23008 0.96244 0.98136 1.00349 1.20431 0.97485 0.95773 0.97585 1.21696 0.99089 0.94469 1.01754 1.21282 0.79278 0.89608 0.79823 1.90647 1.67434 1.50032 1.38854 1.48254 1.38908 1.18628 1.28171 1.21605 0.91413 0.85663 1.02647 1.21799 0.94800 0.99977 0.98505 1.21094 0.92442 0.96859 0.98625 1.22152 0.95334 0.94123 0.84138 0.92754 1.87888 1.24881 1.79912 1.37041 1.22721 0.81521 0.98087 0.99401 1.22157 1.02362 0.99536 0.94301 1.22222 0.98162 1.00238 0.97332 1.20994 0.93652 0.95654 0.85149 0.92730 1.42611 1.83110 1.04361 1.08413 1.18895 1.35722 0.91153 0.88742 0.92493 1.25347 1.02523 1.01642 0.95512 1.69869 1.55264 1.36034 1.02319 0.85571 0.78641 0.81909 0.76630 1.20261 1.23068 1.17853 1.21801 0.93930 0.97139 1.02598 1.21894 0.96621 0.92613 0.90334 0.87086 0.88850 0.85812 0.92277 0.91415 0.86683 0.87256 0.91292 0.90012 0.91368 0.90080 0.90784 0.92813 0.86843 0.89630 0.91591 0.92770 0.93934 0.80341 0.93573 0.91286 0.90881 0.91410 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 14.32 67.78 0.97 -1.74 16 2 C -0.16 -2.35 9.52 25.65 0.24 -2.10 16 3 C -0.07 -1.38 4.95 29.85 0.15 -1.23 16 4 C -0.13 -2.29 4.03 29.85 0.12 -2.17 16 5 C 0.51 12.79 7.70 87.66 0.67 13.47 16 6 O -0.59 -19.01 15.39 -3.04 -0.05 -19.06 16 7 N -0.61 -14.57 2.97 -818.98 -2.43 -17.00 16 8 C 0.11 2.66 6.43 86.36 0.56 3.21 16 9 C -0.11 -2.66 5.19 30.67 0.16 -2.50 16 10 C -0.07 -1.93 1.91 -10.75 -0.02 -1.95 16 11 C 0.10 2.87 1.94 30.63 0.06 2.93 16 12 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 13 O -0.38 -9.80 9.12 -148.98 -1.36 -11.16 16 14 C 0.06 1.25 6.84 72.01 0.49 1.74 16 15 C -0.15 -3.43 6.14 30.68 0.19 -3.25 16 16 C -0.14 -4.46 5.61 30.71 0.17 -4.28 16 17 C 0.15 5.31 2.10 45.08 0.09 5.41 16 18 H 0.05 2.04 6.22 -2.39 -0.01 2.03 16 19 N -0.74 -31.44 4.29 -322.50 -1.38 -32.82 16 20 C -0.21 -11.34 10.42 84.03 0.88 -10.46 16 21 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 22 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 23 N -0.98 -60.93 13.97 21.65 0.30 -60.63 16 24 Si 0.94 43.51 27.74 68.60 1.90 45.42 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 28 C -0.12 -2.98 4.88 30.68 0.15 -2.83 16 29 C 0.11 2.38 6.34 86.35 0.55 2.93 16 30 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 32 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.06 1.23 7.75 -2.39 -0.02 1.22 16 34 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.12 1.59 7.69 -2.39 -0.02 1.57 16 36 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.08 2.14 7.01 -2.38 -0.02 2.12 16 39 H 0.07 1.71 7.73 -2.39 -0.02 1.70 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.27 7.62 -2.39 -0.02 2.25 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.36 14.99 5.59 -92.71 -0.52 14.47 16 49 H 0.26 15.22 8.31 -92.72 -0.77 14.45 16 50 H 0.07 2.06 6.31 -2.39 -0.02 2.04 16 51 H 0.07 1.83 7.73 -2.39 -0.02 1.82 16 52 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.11 1.85 5.93 -2.39 -0.01 1.83 16 Total: -1.00 -67.94 405.41 3.17 -64.76 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.29 Total: 36.17 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.90 Total: -5.68 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -3.52 Total: -110.45 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.41 Total: -30.22 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.42 kcal Total: -67.94 3.17 -64.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186123213.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.939 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds