Wall clock time and date at job start Tue Mar 31 2020 21:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47308 * 119.99896 * 2 1 3 5 5 H 1.08993 * 109.46760 * 300.00346 * 4 2 1 6 6 C 1.53002 * 109.46938 * 59.99984 * 4 2 1 7 7 C 1.52996 * 109.47109 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47325 * 300.00081 * 7 6 4 9 9 C 1.53001 * 109.46804 * 59.99665 * 8 7 6 10 10 H 1.09003 * 109.46782 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47045 * 60.00648 * 9 8 7 12 12 C 1.34774 * 120.00095 * 84.99392 * 11 9 8 13 13 O 1.21339 * 120.00436 * 0.02562 * 12 11 9 14 14 C 1.49459 * 119.99559 * 180.02562 * 12 11 9 15 15 O 1.21346 * 120.00352 * 5.08702 * 14 12 11 16 16 N 1.34775 * 119.99456 * 185.09582 * 14 12 11 17 17 C 1.46502 * 119.99926 * 184.97857 * 16 14 12 18 18 C 1.52993 * 109.47372 * 175.98368 * 17 16 14 19 19 C 1.50698 * 115.55403 * 279.45332 * 18 17 16 20 20 H 1.08003 * 119.99720 * 92.77713 * 19 18 17 21 21 C 1.37878 * 119.99913 * 272.77846 * 19 18 17 22 22 N 1.31512 * 120.00043 * 8.33415 * 21 19 18 23 23 Si 1.86801 * 119.99537 * 188.33629 * 21 19 18 24 24 H 1.48500 * 109.47403 * 90.00045 * 23 21 19 25 25 H 1.48509 * 109.46839 * 209.99867 * 23 21 19 26 26 H 1.48495 * 109.47486 * 329.99610 * 23 21 19 27 27 C 1.53002 * 117.49705 * 133.74546 * 18 17 16 28 28 C 1.53003 * 60.00097 * 252.51316 * 27 18 17 29 29 C 1.52993 * 109.47308 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47492 * 300.00207 * 1 2 3 32 32 H 1.09008 * 109.47160 * 60.00179 * 1 2 3 33 33 H 1.09003 * 109.47606 * 239.99804 * 2 1 3 34 34 H 1.09001 * 109.46913 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47190 * 299.99748 * 3 2 1 36 36 H 1.08995 * 109.47153 * 60.00097 * 3 2 1 37 37 H 1.09003 * 109.47071 * 300.00714 * 6 4 2 38 38 H 1.09005 * 109.47087 * 60.00124 * 6 4 2 39 39 H 1.08993 * 109.46792 * 60.00237 * 7 6 4 40 40 H 1.09001 * 109.46843 * 180.02562 * 7 6 4 41 41 H 1.09005 * 109.46956 * 300.00071 * 8 7 6 42 42 H 1.09000 * 109.47096 * 179.97438 * 8 7 6 43 43 H 0.97002 * 119.99417 * 264.99959 * 11 9 8 44 44 H 0.96995 * 120.00590 * 4.70469 * 16 14 12 45 45 H 1.09005 * 109.47054 * 295.98992 * 17 16 14 46 46 H 1.08998 * 109.46884 * 55.98367 * 17 16 14 47 47 H 0.96999 * 119.99817 * 185.00576 * 22 21 19 48 48 H 1.08999 * 117.50164 * 0.02562 * 27 18 17 49 49 H 1.08997 * 117.49733 * 145.02331 * 27 18 17 50 50 H 1.08998 * 117.49657 * 252.51245 * 28 27 18 51 51 H 1.08995 * 117.51679 * 107.48162 * 28 27 18 52 52 H 1.08999 * 109.47347 * 60.00089 * 29 4 2 53 53 H 1.09003 * 109.47606 * 299.99908 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1638 1.2493 7 6 2.0395 -2.8848 2.4988 8 6 3.5695 -2.8848 2.4995 9 6 4.0794 -1.4423 2.4994 10 1 5.1694 -1.4423 2.5003 11 7 3.5906 -0.7515 3.6953 12 6 4.2670 -0.8542 4.8565 13 8 5.2810 -1.5183 4.9115 14 6 3.7679 -0.1499 6.0767 15 8 2.7067 0.4378 6.0467 16 7 4.4967 -0.1674 7.2102 17 6 3.9592 0.4285 8.4359 18 6 4.9342 0.1877 9.5901 19 6 4.8619 -1.1755 10.2285 20 1 5.5067 -1.9692 9.8812 21 6 3.9726 -1.4093 11.2559 22 7 3.0764 -0.4993 11.5697 23 14 4.0407 -3.0186 12.2019 24 1 4.9576 -2.8731 13.3609 25 1 2.6806 -3.3654 12.6872 26 1 4.5377 -4.0966 11.3098 27 6 5.2637 1.3759 10.4960 28 6 6.3078 0.8563 9.5056 29 6 3.5699 -0.7218 1.2490 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 0.4399 -2.1637 1.2492 38 1 1.8933 -2.6776 0.3593 39 1 1.6757 -2.3709 3.3885 40 1 1.6765 -3.9126 2.4985 41 1 3.9332 -3.3988 1.6097 42 1 3.9324 -3.3981 3.3899 43 1 2.7802 -0.2204 3.6513 44 1 5.3755 -0.5780 7.2156 45 1 3.8258 1.5005 8.2905 46 1 2.9980 -0.0286 8.6709 47 1 2.4990 -0.6320 12.3378 48 1 4.7856 2.3290 10.2699 49 1 5.4282 1.1717 11.5540 50 1 7.1591 0.3103 9.9121 51 1 6.5170 1.4673 8.6276 52 1 3.9337 0.3057 1.2487 53 1 3.9330 -1.2359 0.3590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258148662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:49 Heat of formation + Delta-G solvation = -97.747762 kcal Electronic energy + Delta-G solvation = -30023.807876 eV Core-core repulsion = 26087.063008 eV Total energy + Delta-G solvation = -3936.744868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89182 -40.51745 -39.29219 -38.49981 -36.54605 -35.17535 -34.16647 -33.95130 -31.27788 -30.26439 -28.75973 -27.93452 -27.40247 -25.15310 -23.98279 -23.17615 -22.96884 -21.53115 -21.29014 -20.92788 -20.07608 -19.60476 -18.01326 -17.79320 -17.10594 -16.74102 -16.62884 -16.46223 -16.27391 -15.69790 -15.64038 -15.17105 -14.99863 -14.70494 -14.50850 -14.43396 -14.24015 -14.04045 -13.69570 -13.42967 -13.32427 -13.22875 -13.03819 -13.02816 -12.78806 -12.74311 -12.55727 -12.41549 -12.31000 -12.05146 -12.03611 -11.93527 -11.60565 -11.54763 -11.29258 -10.97005 -10.88668 -10.82209 -10.74924 -10.47579 -10.19722 -10.09384 -10.03218 -8.14770 -6.26195 0.38032 1.38755 1.40972 1.42705 1.50895 2.17318 2.41301 2.71080 3.14261 3.41080 3.56940 3.64755 3.71739 3.79896 4.08918 4.13673 4.18753 4.25755 4.40267 4.40738 4.50963 4.52285 4.58460 4.61339 4.67163 4.72569 4.76331 4.77062 4.87346 4.88930 4.94027 4.99512 5.06673 5.09564 5.10154 5.20347 5.22734 5.24996 5.26277 5.28246 5.32690 5.36531 5.42900 5.49563 5.57612 5.59169 5.63219 5.65494 5.74549 6.01575 6.34201 6.44217 6.77278 6.82205 7.00014 7.43375 8.93693 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002489 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.790810 B =11248.719284 C =11662.595602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.085 4.085 5 H 0.056 0.944 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.128 4.128 9 C 0.140 3.860 10 H 0.085 0.915 11 N -0.680 5.680 12 C 0.514 3.486 13 O -0.540 6.540 14 C 0.493 3.507 15 O -0.557 6.557 16 N -0.673 5.673 17 C 0.176 3.824 18 C -0.001 4.001 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.028 3.972 22 N -0.902 5.902 23 Si 0.945 3.055 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.271 1.271 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.115 4.115 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.414 0.586 44 H 0.414 0.586 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.261 0.739 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.077 0.923 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 0.075 -25.954 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.210 4.210 4 C -0.104 4.104 5 H 0.074 0.926 6 C -0.146 4.146 7 C -0.159 4.159 8 C -0.167 4.167 9 C 0.037 3.963 10 H 0.103 0.897 11 N -0.334 5.334 12 C 0.294 3.706 13 O -0.418 6.418 14 C 0.274 3.726 15 O -0.437 6.437 16 N -0.322 5.322 17 C 0.053 3.947 18 C -0.002 4.002 19 C -0.548 4.548 20 H 0.073 0.927 21 C -0.173 4.173 22 N -0.539 5.539 23 Si 0.771 3.229 24 H -0.199 1.199 25 H -0.214 1.214 26 H -0.196 1.196 27 C -0.188 4.188 28 C -0.216 4.216 29 C -0.152 4.152 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.252 0.748 44 H 0.250 0.750 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.095 0.905 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.718 0.019 -25.845 25.902 hybrid contribution -0.268 -0.668 1.398 1.573 sum -1.986 -0.650 -24.447 24.536 Atomic orbital electron populations 1.21914 0.95373 1.02054 1.01529 1.21076 0.95629 0.95933 0.97598 1.21934 1.01471 0.96033 1.01580 1.21224 0.94739 0.96164 0.98247 0.92580 1.21621 1.00743 0.94617 0.97609 1.21512 0.94966 1.00863 0.98515 1.21915 0.96506 0.95649 1.02595 1.21301 0.99392 0.92136 0.83449 0.89727 1.45945 1.28658 1.50428 1.08382 1.19967 0.84086 0.81637 0.84862 1.90732 1.25043 1.41077 1.84934 1.20494 0.85011 0.81741 0.85367 1.90699 1.23440 1.44573 1.84944 1.45872 1.20948 1.56584 1.08842 1.20878 0.96902 0.95073 0.81836 1.19058 0.92757 0.93476 0.94914 1.20692 1.20108 0.95626 1.18354 0.92706 1.25632 0.93960 0.99456 0.98266 1.70119 1.20090 1.36795 1.26933 0.85754 0.77113 0.80781 0.79227 1.19892 1.21364 1.19596 1.22447 1.03305 0.97159 0.95849 1.23008 0.93291 1.04202 1.01075 1.21943 0.95719 1.01370 0.96175 0.92000 0.93605 0.92367 0.90050 0.91954 0.92340 0.93602 0.91336 0.90295 0.93971 0.91502 0.88537 0.93962 0.74812 0.74983 0.93228 0.93981 0.93011 0.90455 0.91652 0.89652 0.88954 0.90452 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.84 71.98 0.64 -1.06 16 2 C -0.08 -0.89 2.51 -10.79 -0.03 -0.92 16 3 C -0.15 -1.73 8.84 71.98 0.64 -1.09 16 4 C -0.09 -1.08 1.60 -10.79 -0.02 -1.10 16 5 H 0.06 0.90 6.50 -2.39 -0.02 0.89 16 6 C -0.11 -1.36 4.85 30.59 0.15 -1.21 16 7 C -0.12 -2.09 5.77 30.59 0.18 -1.91 16 8 C -0.13 -2.35 5.60 30.59 0.17 -2.17 16 9 C 0.14 2.62 2.78 45.01 0.13 2.75 16 10 H 0.08 1.75 7.58 -2.39 -0.02 1.73 16 11 N -0.68 -16.60 4.23 -443.79 -1.88 -18.47 16 12 C 0.51 16.58 7.85 87.27 0.69 17.26 16 13 O -0.54 -19.30 16.16 -3.21 -0.05 -19.35 16 14 C 0.49 18.69 7.88 87.27 0.69 19.38 16 15 O -0.56 -23.12 16.49 -3.23 -0.05 -23.17 16 16 N -0.67 -26.90 5.50 -464.41 -2.55 -29.46 16 17 C 0.18 8.05 5.57 86.38 0.48 8.53 16 18 C 0.00 -0.06 1.38 -52.93 -0.07 -0.13 16 19 C -0.51 -27.10 8.83 25.60 0.23 -26.87 16 20 H 0.05 2.91 7.83 -2.91 -0.02 2.89 16 21 C 0.03 1.51 5.36 84.66 0.45 1.97 16 22 N -0.90 -50.94 12.89 21.45 0.28 -50.66 16 23 Si 0.95 43.22 29.55 68.60 2.03 45.25 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 C -0.15 -6.69 9.32 30.60 0.29 -6.40 16 28 C -0.18 -7.11 9.84 30.60 0.30 -6.81 16 29 C -0.11 -1.42 4.54 30.61 0.14 -1.28 16 30 H 0.06 0.64 6.43 -2.39 -0.02 0.63 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.85 6.43 -2.39 -0.02 0.84 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.04 0.92 7.60 -2.39 -0.02 0.90 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.41 9.65 6.35 -92.71 -0.59 9.06 16 44 H 0.41 15.90 7.91 -92.71 -0.73 15.16 16 45 H 0.05 2.18 7.94 -2.38 -0.02 2.17 16 46 H 0.04 2.23 8.12 -2.39 -0.02 2.21 16 47 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 48 H 0.08 3.23 8.08 -2.39 -0.02 3.21 16 49 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 51 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 52 H 0.08 0.96 6.43 -2.39 -0.02 0.94 16 53 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -62.41 415.31 2.39 -60.02 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.42 Total: 36.92 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.04 Total: -1.07 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -4.15 Total: -98.59 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.11 Total: -42.53 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.41 2.39 -60.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258148662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.726 kcal (2) G-P(sol) polarization free energy of solvation -62.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds