Wall clock time and date at job start Tue Mar 31 2020 19:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.52993 * 109.47016 * 120.00273 * 2 1 3 5 5 C 1.53001 * 109.46935 * 174.99824 * 4 2 1 6 6 N 1.46505 * 109.47511 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99638 * 89.99748 * 6 5 4 8 8 O 1.21346 * 120.00368 * 354.96939 * 7 6 5 9 9 C 1.49455 * 119.99649 * 175.23856 * 7 6 5 10 10 O 1.21344 * 119.99589 * 275.35783 * 9 7 6 11 11 N 1.34767 * 119.99732 * 95.36321 * 9 7 6 12 12 C 1.46926 * 120.63552 * 354.67114 * 11 9 7 13 13 C 1.52762 * 109.01005 * 233.58989 * 12 11 9 14 14 C 1.53043 * 109.38223 * 305.58636 * 13 12 11 15 15 C 1.53044 * 109.54105 * 61.23789 * 14 13 12 16 16 H 1.09001 * 109.49373 * 58.58802 * 15 14 13 17 17 C 1.50697 * 109.49817 * 178.68750 * 15 14 13 18 18 H 1.07994 * 120.00124 * 359.83240 * 17 15 14 19 19 C 1.37875 * 119.99774 * 179.84594 * 17 15 14 20 20 N 1.31517 * 120.00040 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99922 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47149 * 89.99677 * 21 19 17 23 23 H 1.48498 * 109.47038 * 209.99387 * 21 19 17 24 24 H 1.48493 * 109.47142 * 329.99437 * 21 19 17 25 25 C 1.46934 * 120.62815 * 174.95442 * 11 9 7 26 26 C 1.46495 * 120.00002 * 270.00366 * 6 5 4 27 27 C 1.53001 * 117.50249 * 13.42865 * 26 6 5 28 28 C 1.53000 * 117.49779 * 304.76552 * 26 6 5 29 29 H 1.09001 * 109.46856 * 299.99474 * 1 2 3 30 30 H 1.08990 * 109.47079 * 59.99674 * 1 2 3 31 31 H 1.08998 * 109.47091 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46856 * 240.00526 * 2 1 3 33 33 H 1.09001 * 109.46873 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47196 * 300.00551 * 3 2 1 35 35 H 1.09001 * 109.46921 * 60.00565 * 3 2 1 36 36 H 1.08997 * 109.47495 * 55.00421 * 4 2 1 37 37 H 1.08997 * 109.47444 * 294.99863 * 4 2 1 38 38 H 1.09000 * 109.47003 * 59.99806 * 5 4 2 39 39 H 1.09003 * 109.47490 * 300.00358 * 5 4 2 40 40 H 1.09000 * 109.58057 * 353.42154 * 12 11 9 41 41 H 1.08998 * 109.58800 * 113.84938 * 12 11 9 42 42 H 1.08994 * 109.56359 * 185.55071 * 13 12 11 43 43 H 1.08998 * 109.39026 * 65.51155 * 13 12 11 44 44 H 1.09008 * 109.45587 * 301.22021 * 14 13 12 45 45 H 1.08994 * 109.46252 * 181.26611 * 14 13 12 46 46 H 0.97006 * 119.99811 * 180.02562 * 20 19 17 47 47 H 1.08991 * 109.58453 * 246.15444 * 25 11 9 48 48 H 1.08999 * 109.58507 * 6.43339 * 25 11 9 49 49 H 1.09003 * 115.55020 * 159.10102 * 26 6 5 50 50 H 1.08999 * 117.49355 * 359.97438 * 27 26 6 51 51 H 1.08993 * 117.50294 * 145.01795 * 27 26 6 52 52 H 1.09005 * 117.49587 * 214.97649 * 28 26 6 53 53 H 1.08996 * 117.50245 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0534 -1.5212 2.3843 7 6 4.1821 -2.8628 2.3829 8 8 3.8081 -3.5073 1.4252 9 6 4.7799 -3.5573 3.5636 10 8 5.9850 -3.6611 3.6603 11 7 3.9804 -4.0682 4.5207 12 6 2.5280 -3.8502 4.4782 13 6 2.0746 -3.2579 5.8113 14 6 2.5415 -4.1625 6.9541 15 6 4.0699 -4.2407 6.9532 16 1 4.4855 -3.2390 7.0634 17 6 4.5300 -5.1056 8.0983 18 1 3.8052 -5.5527 8.7625 19 6 5.8763 -5.3258 8.2983 20 7 6.7589 -4.7815 7.4893 21 14 6.4466 -6.3974 9.7181 22 1 6.5358 -7.8096 9.2677 23 1 7.7821 -5.9394 10.1785 24 1 5.4754 -6.2949 10.8367 25 6 4.5454 -4.8488 5.6300 26 6 4.4018 -0.7531 3.5820 27 6 3.9469 0.7065 3.6425 28 6 5.4253 0.3735 3.4258 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6055 -1.7198 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1674 1.1419 39 1 3.8533 -1.3940 0.3000 40 1 2.2860 -3.1585 3.6714 41 1 2.0206 -4.8005 4.3123 42 1 0.9872 -3.1840 5.8269 43 1 2.5084 -2.2654 5.9326 44 1 2.1267 -5.1615 6.8191 45 1 2.1993 -3.7529 7.9044 46 1 7.7061 -4.9368 7.6298 47 1 4.2058 -5.8821 5.5598 48 1 5.6339 -4.8178 5.5814 49 1 4.4118 -1.3162 4.5153 50 1 3.3887 1.0953 2.7908 51 1 3.6579 1.1037 4.6154 52 1 6.1081 0.5518 4.2565 53 1 5.8396 0.5428 2.4320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261608140.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:42 Heat of formation + Delta-G solvation = -75.665510 kcal Electronic energy + Delta-G solvation = -31428.403092 eV Core-core repulsion = 27492.615783 eV Total energy + Delta-G solvation = -3935.787310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14885 -40.30747 -38.84940 -38.40168 -37.30783 -35.34590 -34.43473 -33.56792 -31.72435 -30.67013 -27.95764 -27.65062 -26.84043 -25.24076 -24.24180 -23.52875 -23.34756 -22.65554 -20.95789 -20.82107 -19.83969 -19.05492 -18.34708 -17.98754 -17.59611 -16.78852 -16.58387 -16.07428 -15.97024 -15.86270 -15.35308 -15.28418 -15.16751 -14.79419 -14.57800 -14.52069 -14.40872 -14.06387 -13.83182 -13.64264 -13.46083 -13.15926 -12.90336 -12.86000 -12.76361 -12.64746 -12.42575 -12.33770 -12.28176 -12.25997 -12.16429 -11.86524 -11.70659 -11.68004 -11.58331 -11.51949 -11.38719 -11.10354 -10.97427 -10.59024 -10.50969 -9.70056 -9.63536 -8.11123 -6.27339 0.89711 1.03711 1.41662 1.42981 1.48848 1.52923 2.18752 2.42758 2.82092 3.04113 3.18153 3.63085 3.81621 3.85168 3.88926 3.92222 4.02389 4.06818 4.10612 4.19194 4.25752 4.49340 4.50163 4.58221 4.65120 4.68206 4.70715 4.72605 4.76327 4.81065 4.86063 4.92767 4.93671 5.05357 5.07736 5.12343 5.15892 5.17474 5.17969 5.22187 5.29387 5.33280 5.37202 5.40988 5.50603 5.55294 5.58907 5.85664 5.91395 5.94518 6.28099 6.32019 6.58658 6.80439 6.88455 7.42896 8.92240 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003140 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.283513 B = 8913.701493 C = 9202.278304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.122 4.122 5 C 0.106 3.894 6 N -0.553 5.553 7 C 0.527 3.473 8 O -0.542 6.542 9 C 0.499 3.501 10 O -0.560 6.560 11 N -0.585 5.585 12 C 0.104 3.896 13 C -0.119 4.119 14 C -0.106 4.106 15 C 0.044 3.956 16 H -0.003 1.003 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.262 1.262 25 C 0.121 3.879 26 C 0.029 3.971 27 C -0.139 4.139 28 C -0.188 4.188 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.260 0.740 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.106 0.894 50 H 0.126 0.874 51 H 0.122 0.878 52 H 0.101 0.899 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.733 15.617 -11.897 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.161 4.161 5 C -0.014 4.014 6 N -0.284 5.284 7 C 0.310 3.690 8 O -0.419 6.419 9 C 0.281 3.719 10 O -0.438 6.438 11 N -0.318 5.318 12 C -0.018 4.018 13 C -0.157 4.157 14 C -0.143 4.143 15 C 0.025 3.975 16 H 0.015 0.985 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.188 4.188 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.186 1.186 25 C 0.000 4.000 26 C -0.075 4.075 27 C -0.176 4.176 28 C -0.226 4.226 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.123 0.877 50 H 0.144 0.856 51 H 0.140 0.860 52 H 0.120 0.880 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.128 15.224 -12.387 23.612 hybrid contribution 1.213 -1.216 0.779 1.886 sum -11.915 14.008 -11.608 21.747 Atomic orbital electron populations 1.21808 0.94453 1.01577 1.02394 1.21036 0.96379 0.96819 0.96850 1.21922 1.01194 0.94881 1.02654 1.21981 0.93380 1.00907 0.99815 1.21930 0.95817 0.98154 0.85547 1.47455 1.62015 1.04019 1.14919 1.20045 0.77945 0.83615 0.87390 1.90735 1.49366 1.65779 1.36065 1.20636 0.87110 0.80570 0.83559 1.90785 1.15517 1.60474 1.77029 1.48580 1.08668 1.51094 1.23451 1.21905 0.78350 1.01943 0.99573 1.21807 1.02271 0.98887 0.92748 1.21535 0.95607 0.99203 0.97976 1.18871 0.92700 0.94822 0.91144 0.98502 1.21493 0.91983 1.31038 1.12672 0.91798 1.25854 0.97297 0.97003 0.98627 1.70064 1.01653 1.44859 1.38615 0.85600 0.77560 0.78865 0.79918 1.20398 1.21405 1.18605 1.21978 1.00854 0.92109 0.85051 1.21896 1.07821 0.89896 0.87862 1.23548 0.96180 0.92031 1.05876 1.23472 0.93718 1.01130 1.04329 0.92039 0.91886 0.93469 0.91751 0.92295 0.92056 0.91666 0.93231 0.89981 0.87225 0.91057 0.89827 0.90178 0.87470 0.92010 0.92531 0.92052 0.93121 0.94067 0.90057 0.87662 0.85602 0.85996 0.88033 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.99 0.66 -1.05 16 2 C -0.09 -1.18 2.92 -10.79 -0.03 -1.21 16 3 C -0.15 -1.40 8.95 71.98 0.64 -0.76 16 4 C -0.12 -2.03 4.83 30.59 0.15 -1.88 16 5 C 0.11 2.13 4.38 86.38 0.38 2.51 16 6 N -0.55 -15.16 2.82 -799.39 -2.26 -17.42 16 7 C 0.53 19.42 5.46 87.27 0.48 19.89 16 8 O -0.54 -21.81 16.73 -3.23 -0.05 -21.86 16 9 C 0.50 22.10 5.74 87.27 0.50 22.60 16 10 O -0.56 -29.98 16.51 -3.23 -0.05 -30.04 16 11 N -0.59 -24.42 2.98 -821.32 -2.45 -26.87 16 12 C 0.10 3.24 6.30 86.22 0.54 3.79 16 13 C -0.12 -3.37 6.07 30.53 0.19 -3.18 16 14 C -0.11 -3.85 5.11 30.62 0.16 -3.69 16 15 C 0.04 2.12 2.25 -11.46 -0.03 2.09 16 16 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 17 C -0.53 -28.44 8.56 25.60 0.22 -28.22 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 19 C 0.01 0.65 5.30 84.65 0.45 1.10 16 20 N -0.91 -54.34 11.39 21.45 0.24 -54.10 16 21 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 25 C 0.12 6.04 5.41 86.36 0.47 6.50 16 26 C 0.03 0.75 6.07 44.99 0.27 1.02 16 27 C -0.14 -2.14 9.51 30.62 0.29 -1.85 16 28 C -0.19 -3.89 10.03 30.62 0.31 -3.59 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.52 6.56 -2.39 -0.02 0.51 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.16 7.22 -2.39 -0.02 1.14 16 38 H 0.11 1.60 4.67 -2.39 -0.01 1.59 16 39 H 0.07 1.68 7.50 -2.39 -0.02 1.66 16 40 H 0.08 2.34 6.37 -2.39 -0.02 2.32 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 47 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.08 4.82 5.12 -2.39 -0.01 4.81 16 49 H 0.11 3.36 7.09 -2.39 -0.02 3.35 16 50 H 0.13 1.37 5.85 -2.39 -0.01 1.36 16 51 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 53 H 0.11 2.01 7.84 -2.39 -0.02 1.99 16 Total: -1.00 -72.51 411.91 3.98 -68.53 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.88 Total: 22.09 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.64 Total: 14.07 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -4.46 Total: -98.38 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.11 Total: -51.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.51 3.98 -68.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261608140.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.138 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds