Wall clock time and date at job start Tue Mar 31 2020 19:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47122 * 2 1 4 4 C 1.53007 * 109.46710 * 119.99614 * 2 1 3 5 5 C 1.52996 * 109.47070 * 65.00172 * 4 2 1 6 6 N 1.46497 * 109.46953 * 179.97438 * 5 4 2 7 7 C 1.34772 * 120.00223 * 90.00343 * 6 5 4 8 8 O 1.21349 * 120.00326 * 188.34181 * 7 6 5 9 9 C 1.49452 * 119.99916 * 8.33542 * 7 6 5 10 10 O 1.21351 * 120.00176 * 272.80993 * 9 7 6 11 11 N 1.34775 * 120.00163 * 92.81378 * 9 7 6 12 12 C 1.46926 * 120.62715 * 354.96904 * 11 9 7 13 13 C 1.53194 * 108.77661 * 126.41277 * 12 11 9 14 14 C 1.53034 * 109.31042 * 54.63623 * 13 12 11 15 15 C 1.53046 * 109.53685 * 298.62927 * 14 13 12 16 16 H 1.08997 * 109.49933 * 301.42183 * 15 14 13 17 17 C 1.50703 * 109.49825 * 181.34916 * 15 14 13 18 18 H 1.07998 * 119.99606 * 0.07295 * 17 15 14 19 19 C 1.37874 * 119.99992 * 180.02562 * 17 15 14 20 20 N 1.31509 * 119.99920 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99915 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46900 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46909 * 119.99947 * 21 19 17 24 24 H 1.48494 * 109.47116 * 240.00030 * 21 19 17 25 25 C 1.46990 * 120.61787 * 174.98704 * 11 9 7 26 26 C 1.46506 * 120.00031 * 269.99568 * 6 5 4 27 27 C 1.52997 * 117.49830 * 195.57988 * 26 6 5 28 28 C 1.53001 * 60.00173 * 252.51272 * 27 26 6 29 29 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47100 * 300.00363 * 1 2 3 31 31 H 1.09000 * 109.46994 * 59.99890 * 1 2 3 32 32 H 1.08997 * 109.47291 * 239.99333 * 2 1 3 33 33 H 1.09001 * 109.46838 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46557 * 299.99356 * 3 2 1 35 35 H 1.08997 * 109.47582 * 59.99511 * 3 2 1 36 36 H 1.08999 * 109.46840 * 304.99716 * 4 2 1 37 37 H 1.09000 * 109.46337 * 185.00135 * 4 2 1 38 38 H 1.09000 * 109.47454 * 59.99291 * 5 4 2 39 39 H 1.09002 * 109.47491 * 299.99797 * 5 4 2 40 40 H 1.09004 * 109.58931 * 6.62578 * 12 11 9 41 41 H 1.09000 * 109.58400 * 246.20064 * 12 11 9 42 42 H 1.08997 * 109.49612 * 294.67895 * 13 12 11 43 43 H 1.09006 * 109.49746 * 174.58521 * 13 12 11 44 44 H 1.09007 * 109.46225 * 178.61532 * 14 13 12 45 45 H 1.08996 * 109.45280 * 58.64873 * 14 13 12 46 46 H 0.97005 * 119.99648 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.57942 * 113.80626 * 25 11 9 48 48 H 1.08998 * 109.63088 * 353.36236 * 25 11 9 49 49 H 1.09002 * 115.54775 * 341.28800 * 26 6 5 50 50 H 1.08998 * 117.50019 * 359.97438 * 27 26 6 51 51 H 1.09002 * 117.50034 * 145.02555 * 27 26 6 52 52 H 1.09002 * 117.50285 * 252.51863 * 28 27 26 53 53 H 1.09000 * 117.52012 * 107.47605 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1881 6 7 2.1240 -2.8860 2.3841 7 6 1.3517 -2.9530 3.4866 8 8 1.8093 -3.3889 4.5225 9 6 -0.0684 -2.4901 3.4334 10 8 -0.3342 -1.3233 3.6343 11 7 -1.0538 -3.3687 3.1623 12 6 -0.7400 -4.7599 2.8089 13 6 -1.5208 -5.6931 3.7397 14 6 -3.0100 -5.3475 3.6699 15 6 -3.2237 -3.9069 4.1403 16 1 -2.8524 -3.7981 5.1593 17 6 -4.6939 -3.5783 4.1027 18 1 -5.4054 -4.3227 3.7771 19 6 -5.1308 -2.3277 4.4848 20 7 -4.2644 -1.4214 4.8817 21 14 -6.9534 -1.9206 4.4389 22 1 -7.7127 -3.1033 3.9593 23 1 -7.4139 -1.5572 5.8032 24 1 -7.1823 -0.7781 3.5184 25 6 -2.4627 -2.9529 3.2142 26 6 3.4522 -3.5041 2.3816 27 6 3.7667 -4.5071 3.4933 28 6 4.4122 -3.1200 3.5094 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 2.0697 -2.6550 0.3004 39 1 0.5489 -2.2724 1.1422 40 1 0.3291 -4.9351 2.9288 41 1 -1.0298 -4.9485 1.7752 42 1 -1.1656 -5.5675 4.7624 43 1 -1.3722 -6.7267 3.4268 44 1 -3.5709 -6.0262 4.3126 45 1 -3.3585 -5.4495 2.6422 46 1 -4.5718 -0.5416 5.1509 47 1 -2.8929 -2.9942 2.2136 48 1 -2.5304 -1.9362 3.6015 49 1 3.8814 -3.6921 1.3974 50 1 2.9856 -4.7068 4.2268 51 1 4.4030 -5.3554 3.2407 52 1 5.4730 -3.0556 3.2672 53 1 4.0556 -2.4072 4.2529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261608141.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:45 Heat of formation + Delta-G solvation = -66.208309 kcal Electronic energy + Delta-G solvation = -31676.820652 eV Core-core repulsion = 27741.443437 eV Total energy + Delta-G solvation = -3935.377215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26639 -40.36570 -38.50410 -38.25694 -37.18863 -35.39621 -34.99287 -33.54808 -31.68149 -30.00489 -28.07117 -27.83135 -26.89407 -25.30063 -24.39194 -23.56918 -23.31653 -22.75329 -21.01285 -20.89521 -19.64029 -18.88285 -18.23254 -17.72289 -17.69668 -16.89979 -16.58940 -16.18000 -15.90416 -15.75627 -15.34054 -15.24470 -15.06060 -14.80661 -14.69640 -14.54309 -14.40098 -14.17054 -13.88201 -13.72385 -13.62439 -13.28653 -12.93221 -12.92287 -12.75757 -12.72963 -12.39084 -12.33560 -12.24876 -12.16337 -11.99982 -11.84085 -11.71045 -11.69615 -11.59099 -11.49515 -11.26748 -11.10985 -10.98392 -10.57520 -10.39312 -9.62841 -9.59044 -8.13070 -6.30209 0.90081 1.11649 1.38386 1.41478 1.44679 1.53694 2.28297 2.41714 2.92957 3.09231 3.16979 3.72495 3.85443 3.88378 3.91948 4.01473 4.04969 4.05868 4.11958 4.20150 4.24355 4.43249 4.49378 4.52776 4.57597 4.64695 4.69902 4.75577 4.76176 4.79490 4.84582 4.88935 4.98944 5.02264 5.04080 5.10249 5.11335 5.15771 5.20203 5.27795 5.29296 5.32805 5.40075 5.41428 5.51637 5.56672 5.61681 5.84361 5.92334 5.95619 6.26874 6.32839 6.65561 6.80494 6.89455 7.40648 8.91045 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004070 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.991108 B = 6878.654564 C = 8529.425435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.146 4.146 4 C -0.129 4.129 5 C 0.104 3.896 6 N -0.562 5.562 7 C 0.523 3.477 8 O -0.535 6.535 9 C 0.497 3.503 10 O -0.558 6.558 11 N -0.586 5.586 12 C 0.106 3.894 13 C -0.127 4.127 14 C -0.102 4.102 15 C 0.034 3.966 16 H -0.019 1.019 17 C -0.531 4.531 18 H 0.067 0.933 19 C 0.010 3.990 20 N -0.918 5.918 21 Si 0.959 3.041 22 H -0.258 1.258 23 H -0.286 1.286 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.072 3.928 27 C -0.195 4.195 28 C -0.190 4.190 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.259 0.741 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.183 0.817 50 H 0.096 0.904 51 H 0.125 0.875 52 H 0.129 0.871 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.652 -5.648 -15.335 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C -0.203 4.203 4 C -0.168 4.168 5 C -0.017 4.017 6 N -0.293 5.293 7 C 0.306 3.694 8 O -0.412 6.412 9 C 0.280 3.720 10 O -0.436 6.436 11 N -0.319 5.319 12 C -0.016 4.016 13 C -0.165 4.165 14 C -0.140 4.140 15 C 0.015 3.985 16 H -0.001 1.001 17 C -0.569 4.569 18 H 0.085 0.915 19 C -0.189 4.189 20 N -0.557 5.557 21 Si 0.784 3.216 22 H -0.181 1.181 23 H -0.212 1.212 24 H -0.207 1.207 25 C 0.005 3.995 26 C -0.030 4.030 27 C -0.232 4.232 28 C -0.228 4.228 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.152 0.848 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.199 0.801 50 H 0.114 0.886 51 H 0.143 0.857 52 H 0.147 0.853 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.737 -5.100 -14.643 23.559 hybrid contribution -1.429 1.055 1.181 2.133 sum 16.308 -4.045 -13.463 21.530 Atomic orbital electron populations 1.21906 0.96501 1.01441 1.00991 1.21027 0.94596 0.96753 0.97802 1.21822 1.01539 0.95514 1.01433 1.22046 1.01947 0.94509 0.98301 1.22050 0.99817 0.92657 0.87168 1.47488 1.16251 1.53057 1.12487 1.20257 0.86579 0.77968 0.84603 1.90650 1.73748 1.45774 1.31064 1.20688 0.87115 0.86249 0.77952 1.90780 1.83539 1.18587 1.50727 1.48609 1.06936 1.11406 1.64950 1.22017 0.99959 0.79090 1.00534 1.21911 0.95496 1.00231 0.98874 1.21506 0.95063 0.96182 1.01236 1.18958 0.94352 0.92335 0.92831 1.00126 1.21516 0.92732 0.98245 1.44452 0.91511 1.25903 1.02010 0.96509 0.94496 1.70093 1.35517 1.05264 1.44817 0.85493 0.80195 0.78458 0.77461 1.18143 1.21219 1.20700 1.21902 0.76280 1.02241 0.99041 1.22297 0.82000 1.00926 0.97774 1.23688 1.03900 0.93914 1.01724 1.23255 0.99500 0.98662 1.01394 0.93083 0.95755 0.91363 0.87957 0.91304 0.91533 0.94781 0.95224 0.89729 0.84801 0.91763 0.89999 0.87980 0.94121 0.87314 0.92715 0.91332 0.93145 0.92689 0.90351 0.80054 0.88561 0.85668 0.85335 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.95 71.98 0.64 -2.99 16 2 C -0.08 -1.53 2.92 -10.79 -0.03 -1.56 16 3 C -0.15 -2.58 9.19 71.98 0.66 -1.92 16 4 C -0.13 -2.86 5.01 30.60 0.15 -2.71 16 5 C 0.10 2.15 5.13 86.38 0.44 2.59 16 6 N -0.56 -14.03 2.84 -799.40 -2.27 -16.30 16 7 C 0.52 18.80 5.24 87.27 0.46 19.25 16 8 O -0.53 -21.68 12.86 -3.25 -0.04 -21.73 16 9 C 0.50 21.59 5.60 87.27 0.49 22.08 16 10 O -0.56 -29.22 16.33 -3.25 -0.05 -29.28 16 11 N -0.59 -24.00 2.97 -820.30 -2.44 -26.44 16 12 C 0.11 3.19 6.36 86.36 0.55 3.73 16 13 C -0.13 -3.98 6.08 30.67 0.19 -3.79 16 14 C -0.10 -3.91 5.11 30.62 0.16 -3.75 16 15 C 0.03 1.74 2.25 -11.46 -0.03 1.72 16 16 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 17 C -0.53 -28.92 8.56 25.60 0.22 -28.71 16 18 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 19 C 0.01 0.56 5.30 84.65 0.45 1.01 16 20 N -0.92 -56.12 11.40 21.45 0.24 -55.88 16 21 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.13 6.23 5.39 86.35 0.47 6.70 16 26 C 0.07 1.30 6.62 44.99 0.30 1.60 16 27 C -0.19 -4.03 9.62 30.59 0.29 -3.74 16 28 C -0.19 -3.90 9.88 30.60 0.30 -3.59 16 29 H 0.05 1.25 6.56 -2.39 -0.02 1.23 16 30 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.03 0.94 7.93 -2.39 -0.02 0.92 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.13 1.48 8.03 -2.39 -0.02 1.46 16 39 H 0.06 1.64 5.16 -2.39 -0.01 1.63 16 40 H 0.08 2.25 6.31 -2.38 -0.02 2.23 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 47 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.08 4.65 5.16 -2.39 -0.01 4.64 16 49 H 0.18 1.54 8.09 -2.39 -0.02 1.52 16 50 H 0.10 2.82 5.25 -3.89 -0.02 2.80 16 51 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.13 1.77 8.14 -2.39 -0.02 1.76 16 53 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 Total: -1.00 -77.28 410.88 4.05 -73.23 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.87 Total: 24.41 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.71 Total: 5.92 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.46 Total: -98.62 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.09 Total: -51.00 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.28 4.05 -73.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261608141.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.023 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds