Wall clock time and date at job start Tue Mar 31 2020 19:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47196 * 2 1 4 4 C 1.52996 * 109.47173 * 119.99819 * 2 1 3 5 5 C 1.52999 * 109.47098 * 174.99798 * 4 2 1 6 6 N 1.46902 * 109.47248 * 180.02562 * 5 4 2 7 7 C 1.46856 * 110.99832 * 294.14644 * 6 5 4 8 8 C 1.53044 * 109.62364 * 173.77606 * 7 6 5 9 9 C 1.53221 * 109.20707 * 59.62852 * 8 7 6 10 10 C 1.52538 * 109.19757 * 303.22362 * 9 8 7 11 11 C 1.53730 * 110.09320 * 178.82282 * 10 9 8 12 12 C 1.51449 * 103.35977 * 118.95869 * 11 10 9 13 13 O 1.21233 * 125.41431 * 179.86257 * 12 11 10 14 14 N 1.33967 * 109.17875 * 359.59440 * 12 11 10 15 15 C 1.46493 * 122.78467 * 180.28448 * 14 12 11 16 16 C 1.53003 * 109.47207 * 89.98198 * 15 14 12 17 17 C 1.50691 * 109.47333 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00173 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99672 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47066 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47411 * 119.99973 * 21 19 17 24 24 H 1.48503 * 109.46835 * 239.99535 * 21 19 17 25 25 C 1.34057 * 114.42675 * 0.26803 * 14 12 11 26 26 O 1.21223 * 125.50479 * 180.02562 * 25 14 12 27 27 C 1.46953 * 111.00103 * 170.00021 * 6 5 4 28 28 H 1.09006 * 109.47042 * 299.99945 * 1 2 3 29 29 H 1.09003 * 109.46971 * 59.99505 * 1 2 3 30 30 H 1.08991 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47053 * 240.00709 * 2 1 3 32 32 H 1.08993 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47066 * 300.00265 * 3 2 1 34 34 H 1.09004 * 109.46577 * 59.99954 * 3 2 1 35 35 H 1.09010 * 109.47123 * 55.00346 * 4 2 1 36 36 H 1.08991 * 109.47708 * 294.99953 * 4 2 1 37 37 H 1.08998 * 109.47097 * 60.00229 * 5 4 2 38 38 H 1.08997 * 109.47339 * 300.00378 * 5 4 2 39 39 H 1.09004 * 109.44678 * 293.81975 * 7 6 5 40 40 H 1.08995 * 109.44658 * 53.73081 * 7 6 5 41 41 H 1.09000 * 109.51438 * 179.54341 * 8 7 6 42 42 H 1.09001 * 109.51008 * 299.65100 * 8 7 6 43 43 H 1.09001 * 109.51340 * 183.31253 * 9 8 7 44 44 H 1.08996 * 109.52134 * 63.13877 * 9 8 7 45 45 H 1.09000 * 110.76115 * 0.43731 * 11 10 9 46 46 H 1.09002 * 110.52443 * 237.36607 * 11 10 9 47 47 H 1.09003 * 109.47224 * 209.97262 * 15 14 12 48 48 H 1.08991 * 109.47872 * 329.97639 * 15 14 12 49 49 H 1.09008 * 109.46705 * 299.99808 * 16 15 14 50 50 H 1.09005 * 109.47374 * 59.98946 * 16 15 14 51 51 H 0.97001 * 119.99769 * 179.97438 * 20 19 17 52 52 H 1.08999 * 109.45252 * 64.80787 * 27 6 5 53 53 H 1.08996 * 109.43558 * 304.86327 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 7 4.0545 -1.5240 2.3871 7 6 3.8060 -0.7259 3.5945 8 6 4.1845 -1.5386 4.8348 9 6 5.6676 -1.9156 4.7571 10 6 5.9236 -2.6799 3.4620 11 6 7.4131 -3.0433 3.3489 12 6 7.4019 -4.5572 3.3094 13 8 8.3822 -5.2649 3.2200 14 7 6.1371 -4.9904 3.3947 15 6 5.7834 -6.4120 3.3900 16 6 5.7686 -6.9386 4.8265 17 6 5.4042 -8.4008 4.8217 18 1 5.2029 -8.9041 3.8876 19 6 5.3278 -9.0962 6.0099 20 7 5.5735 -8.4834 7.1473 21 14 4.8769 -10.9089 6.0039 22 1 4.6511 -11.3582 4.6066 23 1 5.9832 -11.6963 6.6050 24 1 3.6371 -11.1131 6.7956 25 6 5.2219 -4.0149 3.4851 26 8 4.0240 -4.1793 3.5718 27 6 5.4794 -1.8589 2.2569 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 3.9994 0.1675 1.1420 38 1 3.8532 -1.3939 0.3002 39 1 4.4069 0.1829 3.5588 40 1 2.7500 -0.4604 3.6430 41 1 4.0071 -0.9417 5.7294 42 1 3.5793 -2.4442 4.8753 43 1 5.9286 -2.5442 5.6085 44 1 6.2747 -1.0106 4.7718 45 1 7.9651 -2.6857 4.2180 46 1 7.8365 -2.6381 2.4298 47 1 4.7960 -6.5393 2.9463 48 1 6.5180 -6.9673 2.8070 49 1 6.7561 -6.8113 5.2703 50 1 5.0339 -6.3832 5.4095 51 1 5.5194 -8.9725 7.9832 52 1 6.0650 -0.9409 2.2073 53 1 5.6342 -2.4378 1.3464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272449411.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:37 Heat of formation + Delta-G solvation = -107.561346 kcal Electronic energy + Delta-G solvation = -30712.242213 eV Core-core repulsion = 26775.071796 eV Total energy + Delta-G solvation = -3937.170417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.19300 -40.18650 -39.18750 -37.57356 -36.92644 -35.88823 -34.78752 -33.35502 -31.73141 -29.98402 -28.58140 -27.96290 -27.08242 -25.68401 -25.10374 -23.66881 -23.37942 -22.21815 -21.55336 -20.65134 -19.60682 -18.85975 -17.72540 -17.52743 -17.34655 -16.81092 -16.54037 -16.35991 -15.91616 -15.77649 -15.33510 -15.17220 -15.07559 -14.92050 -14.72936 -14.61507 -14.34464 -14.30363 -13.86003 -13.62599 -13.58321 -13.41813 -13.16248 -13.06226 -12.93758 -12.88142 -12.71275 -12.45342 -12.16003 -12.12359 -12.07097 -11.96128 -11.79908 -11.66307 -11.51160 -11.49820 -11.29759 -11.25640 -11.03074 -10.72532 -10.65693 -10.53558 -9.04813 -8.29732 -6.42967 0.60384 1.35842 1.37653 1.50939 1.64560 1.86656 2.36188 2.80157 3.04007 3.16544 3.25348 3.49933 3.61440 3.92658 3.99089 4.04397 4.12730 4.15036 4.17873 4.25402 4.37715 4.40527 4.49975 4.50321 4.56372 4.57656 4.67567 4.69322 4.71511 4.73301 4.75989 4.81256 4.83637 4.88083 4.95604 4.99588 5.05548 5.07918 5.20250 5.21478 5.24602 5.29865 5.33701 5.37728 5.47924 5.54523 5.56450 5.67101 6.01705 6.04498 6.22681 6.28936 6.47247 6.69851 6.91149 7.26785 8.83391 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002802 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.199178 B = 9991.204487 C =10919.478324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.107 4.107 5 C 0.063 3.937 6 N -0.559 5.559 7 C 0.066 3.934 8 C -0.128 4.128 9 C -0.100 4.100 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.515 3.485 13 O -0.528 6.528 14 N -0.583 5.583 15 C 0.116 3.884 16 C 0.030 3.970 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.275 1.275 25 C 0.528 3.472 26 O -0.488 6.488 27 C 0.082 3.918 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.121 0.879 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.077 0.923 48 H 0.079 0.921 49 H -0.012 1.012 50 H -0.013 1.013 51 H 0.266 0.734 52 H 0.089 0.911 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 26.111 -13.141 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.064 4.064 6 N -0.284 5.284 7 C -0.062 4.062 8 C -0.166 4.166 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.169 4.169 12 C 0.306 3.694 13 O -0.403 6.403 14 N -0.325 5.325 15 C -0.005 4.005 16 C -0.008 4.008 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.798 3.202 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.201 1.201 25 C 0.318 3.682 26 O -0.359 6.359 27 C -0.046 4.046 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.176 0.824 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.007 0.993 50 H 0.006 0.994 51 H 0.075 0.925 52 H 0.107 0.893 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.815 25.165 -12.932 28.434 hybrid contribution -0.042 -1.105 0.528 1.226 sum -2.857 24.060 -12.404 27.220 Atomic orbital electron populations 1.21831 0.95244 1.01409 1.01989 1.21073 0.95775 0.96810 0.97635 1.21863 1.01306 0.95091 1.01892 1.21600 0.94873 0.99930 0.98118 1.22116 0.95446 0.97096 0.91745 1.61762 1.16690 1.46473 1.03462 1.22035 1.01481 0.93998 0.88663 1.21708 0.95735 1.00644 0.98525 1.21555 0.98233 1.00798 0.93135 1.21218 0.94006 0.92294 1.00910 1.22717 0.96076 0.88166 1.09963 1.21758 0.81122 0.93797 0.72692 1.90728 1.37058 1.64899 1.47629 1.47301 1.10628 1.09630 1.64967 1.21664 1.00984 0.78333 0.99495 1.19103 0.94640 0.95876 0.91196 1.21494 1.47902 0.95346 0.93735 0.91523 1.26059 0.94678 1.04161 0.94896 1.70115 1.49837 1.38683 0.98465 0.85261 0.78011 0.78078 0.78876 1.18287 1.19980 1.20070 1.21202 0.86094 0.87594 0.73353 1.90692 1.14698 1.85863 1.44598 1.21892 0.88983 0.99080 0.94650 0.92719 0.91987 0.93541 0.91396 0.92052 0.92366 0.92728 0.93614 0.91876 0.92746 0.91282 0.92509 0.90782 0.89576 0.93648 0.92717 0.86125 0.83506 0.82374 0.90466 0.90281 0.99333 0.99429 0.92497 0.89284 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.24 2.92 -10.79 -0.03 -1.27 16 3 C -0.14 -1.47 8.95 71.98 0.64 -0.83 16 4 C -0.11 -1.78 4.61 30.59 0.14 -1.64 16 5 C 0.06 0.97 4.72 86.30 0.41 1.38 16 6 N -0.56 -11.05 4.02 -897.25 -3.61 -14.66 16 7 C 0.07 1.14 5.28 86.33 0.46 1.59 16 8 C -0.13 -2.75 5.81 30.68 0.18 -2.58 16 9 C -0.10 -1.91 4.58 30.51 0.14 -1.77 16 10 C -0.08 -1.75 0.69 -52.98 -0.04 -1.79 16 11 C -0.13 -2.45 6.30 30.33 0.19 -2.26 16 12 C 0.51 17.45 8.09 88.02 0.71 18.17 16 13 O -0.53 -21.97 17.48 -2.88 -0.05 -22.02 16 14 N -0.58 -22.65 2.56 -756.73 -1.94 -24.59 16 15 C 0.12 5.46 5.50 86.38 0.48 5.93 16 16 C 0.03 1.71 5.30 29.85 0.16 1.87 16 17 C -0.55 -32.95 9.11 25.60 0.23 -32.72 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 0.02 5.46 84.66 0.46 0.48 16 20 N -0.93 -59.07 13.29 21.45 0.28 -58.78 16 21 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.53 18.49 6.52 87.81 0.57 19.07 16 26 O -0.49 -20.64 15.02 -2.85 -0.04 -20.68 16 27 C 0.08 1.36 4.01 86.11 0.35 1.71 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.56 6.56 -2.39 -0.02 0.54 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.55 8.14 -2.38 -0.02 0.54 16 35 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 1.03 6.42 -2.39 -0.02 1.02 16 37 H 0.05 0.63 6.55 -2.39 -0.02 0.61 16 38 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 39 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.07 1.32 6.20 -2.39 -0.01 1.31 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.41 6.26 -2.39 -0.01 1.40 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.15 2.09 7.71 -2.39 -0.02 2.08 16 46 H 0.16 1.73 7.72 -2.39 -0.02 1.71 16 47 H 0.08 3.61 7.84 -2.39 -0.02 3.59 16 48 H 0.08 3.65 7.83 -2.39 -0.02 3.63 16 49 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 50 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 51 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 52 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.08 1.32 8.03 -2.39 -0.02 1.31 16 Total: -1.00 -80.62 409.43 3.25 -77.37 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.87 Total: 11.30 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.71 Total: 4.04 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -5.26 Total: -98.04 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.09 Total: -42.70 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.62 3.25 -77.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272449411.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.188 kcal (2) G-P(sol) polarization free energy of solvation -80.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds