Wall clock time and date at job start Tue Mar 31 2020 19:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46846 * 111.00182 * 45.84522 * 6 5 4 8 8 C 1.53044 * 109.62552 * 186.22333 * 7 6 5 9 9 C 1.53224 * 109.20970 * 300.37330 * 8 7 6 10 10 C 1.52533 * 109.19719 * 56.76838 * 9 8 7 11 11 C 1.53738 * 110.30922 * 181.31502 * 10 9 8 12 12 C 1.51453 * 103.36320 * 241.32571 * 11 10 9 13 13 O 1.21218 * 125.41691 * 179.97438 * 12 11 10 14 14 N 1.33956 * 109.17177 * 0.02562 * 12 11 10 15 15 C 1.46501 * 122.78395 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47261 * 269.95647 * 15 14 12 17 17 C 1.50695 * 109.47209 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00197 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00142 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99861 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47165 * 89.99941 * 21 19 17 23 23 H 1.48505 * 109.46962 * 209.99947 * 21 19 17 24 24 H 1.48499 * 109.47426 * 329.99743 * 21 19 17 25 25 C 1.34051 * 114.43550 * 359.97438 * 14 12 11 26 26 O 1.21226 * 125.50132 * 179.97438 * 25 14 12 27 27 C 1.46962 * 110.99903 * 169.99944 * 6 5 4 28 28 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 29 29 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 30 30 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 32 32 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 33 33 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 34 34 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 36 36 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 37 37 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 38 38 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 39 39 H 1.08989 * 109.44302 * 306.27441 * 7 6 5 40 40 H 1.09004 * 109.44222 * 66.17938 * 7 6 5 41 41 H 1.09003 * 109.51140 * 180.45451 * 8 7 6 42 42 H 1.08997 * 109.51619 * 60.29673 * 8 7 6 43 43 H 1.09001 * 109.52245 * 296.85502 * 9 8 7 44 44 H 1.09000 * 109.51850 * 176.68544 * 9 8 7 45 45 H 1.09005 * 110.63792 * 359.79197 * 11 10 9 46 46 H 1.08997 * 110.64378 * 122.84949 * 11 10 9 47 47 H 1.09002 * 109.47389 * 29.96006 * 15 14 12 48 48 H 1.09001 * 109.47518 * 149.95741 * 15 14 12 49 49 H 1.08995 * 109.47074 * 300.00103 * 16 15 14 50 50 H 1.09001 * 109.46778 * 59.99640 * 16 15 14 51 51 H 0.97003 * 120.00211 * 180.02562 * 20 19 17 52 52 H 1.09007 * 109.44912 * 295.19498 * 27 6 5 53 53 H 1.08992 * 109.45316 * 55.12586 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 7 4.0544 -1.5242 2.3869 7 6 3.2521 -2.7218 2.6670 8 6 3.6871 -3.3313 4.0017 9 6 5.1708 -3.7059 3.9252 10 6 5.9828 -2.4672 3.5607 11 6 7.4742 -2.8218 3.4447 12 6 8.1217 -1.9657 4.5132 13 8 9.3066 -1.9358 4.7670 14 7 7.1765 -1.2476 5.1341 15 6 7.4765 -0.3144 6.2229 16 6 7.4029 -1.0518 7.5615 17 6 7.7120 -0.0921 8.6814 18 1 7.9380 0.9406 8.4606 19 6 7.7064 -0.5324 9.9880 20 7 7.4307 -1.7899 10.2569 21 14 8.0890 0.6574 11.3762 22 1 6.8308 1.2914 11.8456 23 1 8.7211 -0.0797 12.4998 24 1 9.0192 1.7064 10.8869 25 6 5.9336 -1.4528 4.6759 26 8 4.9318 -0.9112 5.0913 27 6 5.4795 -1.8591 2.2566 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6054 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 3.8532 -1.3940 0.3000 38 1 3.9994 0.1674 1.1419 39 1 2.1983 -2.4484 2.7191 40 1 3.3984 -3.4511 1.8702 41 1 3.0959 -4.2245 4.2039 42 1 3.5356 -2.6050 4.8003 43 1 5.3142 -4.4723 3.1634 44 1 5.5008 -4.0862 4.8919 45 1 7.6346 -3.8801 3.6508 46 1 7.8560 -2.5592 2.4582 47 1 8.4785 0.0926 6.0870 48 1 6.7502 0.4983 6.2155 49 1 6.4009 -1.4588 7.6974 50 1 8.1292 -1.8646 7.5689 51 1 7.4264 -2.0997 11.1761 52 1 5.6111 -2.5769 1.4468 53 1 6.0461 -0.9547 2.0353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272449412.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:40 Heat of formation + Delta-G solvation = -104.711399 kcal Electronic energy + Delta-G solvation = -30719.717961 eV Core-core repulsion = 26782.671127 eV Total energy + Delta-G solvation = -3937.046834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.19865 -40.22640 -39.22466 -37.57598 -36.92861 -35.88401 -34.79501 -33.34667 -31.75354 -29.99392 -28.55581 -27.94739 -27.08167 -25.82521 -25.05890 -23.68209 -23.43831 -22.15735 -21.53720 -20.62133 -19.60744 -18.85807 -17.73452 -17.53061 -17.37299 -16.82671 -16.54307 -16.38504 -15.87666 -15.56932 -15.55648 -15.25527 -15.03814 -14.88982 -14.79912 -14.60535 -14.34088 -14.25319 -13.96498 -13.65317 -13.48220 -13.34782 -13.20889 -13.06944 -12.91799 -12.84963 -12.72193 -12.49421 -12.23228 -12.15368 -12.11101 -11.95512 -11.78855 -11.57424 -11.51155 -11.45971 -11.32672 -11.26997 -10.99366 -10.72694 -10.65099 -10.53761 -9.04494 -8.29496 -6.42893 0.60126 1.35803 1.39042 1.49815 1.64514 1.86190 2.36310 2.80988 3.04162 3.16336 3.25408 3.49607 3.60853 3.93546 3.97721 3.99640 4.11926 4.14389 4.17534 4.27847 4.39296 4.41361 4.48002 4.51125 4.56250 4.58582 4.62618 4.68700 4.71854 4.73272 4.74243 4.80635 4.83405 4.85642 4.95670 5.02367 5.05366 5.08515 5.17671 5.20419 5.25824 5.29730 5.33741 5.36979 5.47429 5.50081 5.57474 5.67011 6.01477 6.04492 6.22367 6.28871 6.46977 6.69699 6.90872 7.26832 8.83423 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.002791 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.941713 B =10028.320776 C =10836.455208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.114 4.114 5 C 0.062 3.938 6 N -0.559 5.559 7 C 0.061 3.939 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.080 4.080 11 C -0.130 4.130 12 C 0.515 3.485 13 O -0.528 6.528 14 N -0.583 5.583 15 C 0.116 3.884 16 C 0.030 3.970 17 C -0.548 4.548 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.260 1.260 25 C 0.528 3.472 26 O -0.488 6.488 27 C 0.082 3.918 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.120 0.880 44 H 0.054 0.946 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.079 0.921 48 H 0.077 0.923 49 H -0.013 1.013 50 H -0.012 1.012 51 H 0.266 0.734 52 H 0.089 0.911 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -3.798 -26.982 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.284 5.284 7 C -0.066 4.066 8 C -0.167 4.167 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.169 4.169 12 C 0.306 3.694 13 O -0.403 6.403 14 N -0.325 5.325 15 C -0.005 4.005 16 C -0.008 4.008 17 C -0.586 4.586 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.184 1.184 25 C 0.318 3.682 26 O -0.359 6.359 27 C -0.046 4.046 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.138 0.862 44 H 0.073 0.927 45 H 0.165 0.835 46 H 0.176 0.824 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.006 0.994 50 H 0.007 0.993 51 H 0.075 0.925 52 H 0.107 0.893 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.828 -3.251 -26.075 28.420 hybrid contribution 0.363 0.268 1.123 1.211 sum -10.464 -2.983 -24.952 27.221 Atomic orbital electron populations 1.21827 0.94913 1.01959 1.01697 1.21071 0.95948 0.96122 0.97861 1.21901 1.01131 0.96200 1.01488 1.21763 0.94460 1.00967 0.97933 1.22141 0.95611 0.98679 0.90064 1.61835 1.02254 1.26045 1.38225 1.22121 0.98047 0.90372 0.96079 1.21721 0.95687 1.00811 0.98437 1.21552 0.94588 0.94547 1.03047 1.21213 0.96726 0.95666 0.94806 1.22720 0.91646 1.02655 0.99923 1.21747 0.85244 0.79529 0.82840 1.90724 1.16315 1.65589 1.67662 1.47298 1.11230 1.40282 1.33708 1.21670 1.01394 0.91726 0.85697 1.19095 0.94589 0.95340 0.91763 1.21467 1.48463 0.96609 0.92054 0.91508 1.26057 0.94479 0.97232 1.01997 1.70109 1.49509 1.16946 1.20533 0.85312 0.78807 0.78481 0.77652 1.19519 1.20325 1.18415 1.21198 0.81191 0.82445 0.83404 1.90693 1.34056 1.50342 1.60769 1.21905 0.89207 1.00583 0.92948 0.93484 0.92107 0.92262 0.90327 0.92158 0.93760 0.92572 0.90859 0.93198 0.93176 0.91487 0.90194 0.92571 0.89537 0.93647 0.86158 0.92727 0.83516 0.82376 0.90279 0.90444 0.99434 0.99339 0.92490 0.89307 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.11 2.92 -10.80 -0.03 -1.14 16 3 C -0.15 -2.01 8.95 71.98 0.64 -1.37 16 4 C -0.11 -1.70 3.94 30.59 0.12 -1.58 16 5 C 0.06 0.97 5.03 86.30 0.43 1.40 16 6 N -0.56 -11.13 4.17 -897.27 -3.75 -14.87 16 7 C 0.06 1.05 4.85 86.33 0.42 1.47 16 8 C -0.13 -2.77 5.81 30.68 0.18 -2.59 16 9 C -0.10 -1.92 4.60 30.51 0.14 -1.78 16 10 C -0.08 -1.76 0.69 -52.98 -0.04 -1.80 16 11 C -0.13 -2.47 6.30 30.34 0.19 -2.28 16 12 C 0.51 17.50 8.09 88.02 0.71 18.21 16 13 O -0.53 -22.00 17.48 -2.84 -0.05 -22.05 16 14 N -0.58 -22.69 2.56 -756.75 -1.94 -24.63 16 15 C 0.12 5.46 5.50 86.38 0.47 5.93 16 16 C 0.03 1.73 5.30 29.85 0.16 1.89 16 17 C -0.55 -33.03 9.11 25.60 0.23 -32.80 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 0.04 5.46 84.66 0.46 0.50 16 20 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 21 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 C 0.53 18.55 6.52 87.81 0.57 19.12 16 26 O -0.49 -20.68 15.02 -2.86 -0.04 -20.73 16 27 C 0.08 1.37 3.96 86.10 0.34 1.71 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.76 6.57 -2.39 -0.02 0.74 16 35 H 0.07 0.98 6.20 -2.39 -0.01 0.97 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 38 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 39 H 0.08 1.40 5.78 -2.39 -0.01 1.38 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.41 6.25 -2.39 -0.01 1.40 16 43 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.15 2.10 7.72 -2.38 -0.02 2.09 16 46 H 0.16 1.75 7.72 -2.39 -0.02 1.73 16 47 H 0.08 3.66 7.83 -2.39 -0.02 3.64 16 48 H 0.08 3.62 7.84 -2.39 -0.02 3.60 16 49 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 51 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 52 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 53 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 Total: -1.00 -80.62 408.30 3.08 -77.55 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.87 Total: 11.69 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.67 Total: 3.86 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -5.40 Total: -98.33 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.09 Total: -42.77 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.62 3.08 -77.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272449412.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.165 kcal (2) G-P(sol) polarization free energy of solvation -80.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds