Wall clock time and date at job start Tue Mar 31 2020 19:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 C 1.53007 * 109.47062 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47062 * 179.97438 * 4 3 2 6 6 N 1.46892 * 109.46983 * 180.02562 * 5 4 3 7 7 C 1.46837 * 111.00249 * 293.95345 * 6 5 4 8 8 C 1.53046 * 109.64264 * 173.77526 * 7 6 5 9 9 C 1.53234 * 109.19514 * 59.63227 * 8 7 6 10 10 C 1.52522 * 109.19065 * 303.23271 * 9 8 7 11 11 C 1.53738 * 110.31324 * 178.71640 * 10 9 8 12 12 C 1.51454 * 103.36350 * 118.65935 * 11 10 9 13 13 O 1.21228 * 125.41002 * 179.97438 * 12 11 10 14 14 N 1.33954 * 109.17554 * 0.02562 * 12 11 10 15 15 C 1.46494 * 122.78722 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47173 * 89.97066 * 15 14 12 17 17 C 1.50697 * 109.46993 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00667 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00065 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46875 * 60.00132 * 21 19 17 23 23 H 1.48495 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46934 * 300.00500 * 21 19 17 25 25 C 1.34049 * 114.43020 * 359.97438 * 14 12 11 26 26 O 1.21228 * 125.50010 * 180.02562 * 25 14 12 27 27 C 1.46960 * 111.00030 * 169.81012 * 6 5 4 28 28 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00007 * 1 2 3 30 30 H 1.09003 * 109.47250 * 59.99991 * 1 2 3 31 31 H 1.09000 * 109.47204 * 239.99993 * 2 1 3 32 32 H 1.08997 * 109.47391 * 119.99578 * 2 1 3 33 33 H 1.09000 * 109.47133 * 59.99949 * 3 2 1 34 34 H 1.08999 * 109.47319 * 299.99613 * 3 2 1 35 35 H 1.09000 * 109.46887 * 60.00167 * 4 3 2 36 36 H 1.08999 * 109.47039 * 300.00153 * 4 3 2 37 37 H 1.09004 * 109.46908 * 59.99869 * 5 4 3 38 38 H 1.09003 * 109.47111 * 300.00462 * 5 4 3 39 39 H 1.08999 * 109.44203 * 53.72513 * 7 6 5 40 40 H 1.08994 * 109.41835 * 293.80989 * 7 6 5 41 41 H 1.08994 * 109.52376 * 179.54916 * 8 7 6 42 42 H 1.09000 * 109.51950 * 299.72135 * 8 7 6 43 43 H 1.09001 * 109.51584 * 63.14902 * 9 8 7 44 44 H 1.08999 * 109.51890 * 183.31985 * 9 8 7 45 45 H 1.09001 * 110.64017 * 237.13140 * 11 10 9 46 46 H 1.08998 * 110.63800 * 0.03090 * 11 10 9 47 47 H 1.09004 * 109.47650 * 209.97763 * 15 14 12 48 48 H 1.09003 * 109.47122 * 329.97650 * 15 14 12 49 49 H 1.08999 * 109.47414 * 300.00371 * 16 15 14 50 50 H 1.08998 * 109.46632 * 60.00753 * 16 15 14 51 51 H 0.96998 * 120.00354 * 179.97438 * 20 19 17 52 52 H 1.09005 * 109.45473 * 304.85755 * 27 6 5 53 53 H 1.08996 * 109.45413 * 64.79240 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 7 5.5489 2.8851 0.0000 7 6 6.0752 2.3291 1.2530 8 6 7.5973 2.1997 1.1592 9 6 8.2060 3.5834 0.9085 10 6 7.5948 4.1785 -0.3558 11 6 8.1649 5.5826 -0.6144 12 6 8.8491 5.4407 -1.9581 13 8 9.4366 6.3245 -2.5440 14 7 8.7010 4.1837 -2.3966 15 6 9.2493 3.7191 -3.6732 16 6 10.6654 3.1825 -3.4550 17 6 11.2295 2.7052 -4.7683 18 1 10.6375 2.7777 -5.6688 19 6 12.5016 2.1758 -4.8205 20 7 13.2224 2.0870 -3.7241 21 14 13.2013 1.5848 -6.4486 22 1 13.2441 2.7166 -7.4090 23 1 14.5752 1.0627 -6.2366 24 1 12.3405 0.5048 -6.9944 25 6 8.0095 3.3861 -1.5705 26 8 7.7581 2.2167 -1.7676 27 6 6.0756 4.2353 -0.2433 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9288 0.8908 37 1 3.7162 3.3994 0.8896 38 1 3.7170 3.3984 -0.8904 39 1 5.6375 1.3459 1.4257 40 1 5.8177 2.9912 2.0796 41 1 7.9867 1.7944 2.0931 42 1 7.8562 1.5335 0.3362 43 1 7.9934 4.2339 1.7569 44 1 9.2846 3.4893 0.7821 45 1 7.3630 6.3191 -0.6673 46 1 8.8836 5.8538 0.1588 47 1 8.6176 2.9258 -4.0729 48 1 9.2801 4.5492 -4.3790 49 1 11.2971 3.9758 -3.0555 50 1 10.6345 2.3524 -2.7493 51 1 14.1171 1.7143 -3.7607 52 1 5.6573 4.6265 -1.1708 53 1 5.7971 4.8881 0.5839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272471442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:43 Heat of formation + Delta-G solvation = -110.695725 kcal Electronic energy + Delta-G solvation = -30390.950801 eV Core-core repulsion = 26453.644467 eV Total energy + Delta-G solvation = -3937.306334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.19600 -40.15980 -39.13363 -37.15252 -36.91135 -35.86024 -34.87435 -33.46202 -31.80270 -31.41558 -28.75118 -27.11933 -27.06512 -25.35833 -24.41871 -23.66551 -23.15319 -21.99341 -21.63215 -21.42195 -19.60736 -18.85497 -17.72128 -17.52368 -17.33609 -16.77472 -16.71427 -16.54378 -15.90254 -15.76116 -15.36491 -15.21916 -15.10917 -14.93500 -14.77283 -14.55549 -14.34529 -14.27615 -13.89020 -13.82120 -13.63432 -13.45854 -13.21120 -12.91783 -12.88938 -12.80680 -12.72596 -12.39938 -12.14624 -12.12268 -11.97219 -11.89306 -11.83566 -11.71097 -11.64471 -11.46277 -11.29678 -11.27087 -11.02178 -10.72792 -10.64599 -10.53724 -9.06839 -8.29156 -6.42683 0.60164 1.35835 1.41012 1.48348 1.64511 1.86241 2.36481 2.79937 3.04299 3.16173 3.25162 3.49451 3.61320 3.91810 3.99079 4.04288 4.13428 4.16861 4.23335 4.27792 4.35341 4.39395 4.44633 4.50012 4.55487 4.56291 4.63385 4.68276 4.69127 4.72283 4.72779 4.77711 4.83602 4.87834 4.94632 4.99950 5.04857 5.06252 5.17992 5.22266 5.29374 5.29612 5.33771 5.37032 5.46427 5.49969 5.55492 5.66952 6.01526 6.04563 6.22134 6.28542 6.47042 6.69640 6.90919 7.26922 8.83469 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.002712 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.349989 B =10322.435368 C =11464.160307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.560 5.560 7 C 0.065 3.935 8 C -0.128 4.128 9 C -0.100 4.100 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.515 3.485 13 O -0.528 6.528 14 N -0.583 5.583 15 C 0.116 3.884 16 C 0.030 3.970 17 C -0.549 4.549 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.528 3.472 26 O -0.488 6.488 27 C 0.082 3.918 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.159 0.841 46 H 0.147 0.853 47 H 0.077 0.923 48 H 0.079 0.921 49 H -0.012 1.012 50 H -0.013 1.013 51 H 0.266 0.734 52 H 0.078 0.922 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 4.085 16.152 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.151 4.151 5 C -0.064 4.064 6 N -0.284 5.284 7 C -0.062 4.062 8 C -0.166 4.166 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.170 4.170 12 C 0.307 3.693 13 O -0.403 6.403 14 N -0.325 5.325 15 C -0.005 4.005 16 C -0.007 4.007 17 C -0.587 4.587 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.189 1.189 25 C 0.318 3.682 26 O -0.359 6.359 27 C -0.046 4.046 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.139 0.861 44 H 0.073 0.927 45 H 0.176 0.824 46 H 0.165 0.835 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.007 0.993 50 H 0.005 0.995 51 H 0.075 0.925 52 H 0.096 0.904 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.685 3.535 15.391 28.467 hybrid contribution 0.933 -0.299 -0.717 1.214 sum -22.752 3.237 14.674 27.267 Atomic orbital electron populations 1.21768 0.95250 1.01817 1.02034 1.21534 0.96352 0.96930 1.01669 1.21523 0.94167 0.96867 1.02356 1.21566 0.95522 0.96316 1.01709 1.22065 0.85674 0.97317 1.01310 1.61763 1.08280 1.21938 1.36468 1.22040 0.94187 1.00339 0.89661 1.21712 0.95836 0.96914 1.02155 1.21552 0.99208 0.97823 0.95145 1.21219 0.99272 0.93981 0.93972 1.22714 1.03527 0.97696 0.93015 1.21746 0.78130 0.80332 0.89142 1.90727 1.41901 1.43933 1.63743 1.47295 1.49540 1.13920 1.21764 1.21675 0.95851 0.99494 0.83509 1.19089 0.90928 0.94051 0.96671 1.21440 1.00749 1.41826 0.94669 0.91494 1.26065 0.97254 0.95497 1.00990 1.70098 1.11117 1.45916 1.29922 0.85362 0.77362 0.79013 0.78499 1.18818 1.20443 1.18945 1.21202 0.75461 0.86417 0.85159 1.90694 1.53200 1.15689 1.76295 1.21905 0.89073 0.90576 1.03081 0.92659 0.92155 0.92779 0.93044 0.92038 0.91011 0.92103 0.93622 0.91863 0.93024 0.91126 0.90718 0.92492 0.89535 0.93647 0.86117 0.92714 0.82357 0.83511 0.90440 0.90255 0.99341 0.99466 0.92492 0.90391 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.70 5.93 30.59 0.18 -1.52 16 3 C -0.11 -1.43 5.22 30.60 0.16 -1.27 16 4 C -0.11 -1.85 5.15 30.60 0.16 -1.70 16 5 C 0.06 0.98 4.96 86.31 0.43 1.40 16 6 N -0.56 -11.09 4.02 -897.29 -3.61 -14.69 16 7 C 0.07 1.13 5.28 86.33 0.46 1.58 16 8 C -0.13 -2.76 5.81 30.69 0.18 -2.58 16 9 C -0.10 -1.91 4.60 30.51 0.14 -1.77 16 10 C -0.08 -1.76 0.69 -52.98 -0.04 -1.80 16 11 C -0.13 -2.46 6.30 30.34 0.19 -2.27 16 12 C 0.51 17.48 8.09 88.03 0.71 18.19 16 13 O -0.53 -21.98 17.48 -2.87 -0.05 -22.03 16 14 N -0.58 -22.67 2.56 -756.74 -1.94 -24.61 16 15 C 0.12 5.44 5.50 86.38 0.47 5.91 16 16 C 0.03 1.76 5.30 29.85 0.16 1.91 16 17 C -0.55 -33.08 9.11 25.60 0.23 -32.85 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 0.02 5.46 84.66 0.46 0.48 16 20 N -0.93 -59.09 13.29 21.45 0.28 -58.81 16 21 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.53 18.51 6.52 87.81 0.57 19.09 16 26 O -0.49 -20.68 15.01 -2.87 -0.04 -20.72 16 27 C 0.08 1.36 4.00 86.11 0.34 1.70 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 37 H 0.05 0.59 8.12 -2.38 -0.02 0.57 16 38 H 0.07 1.11 8.00 -2.39 -0.02 1.09 16 39 H 0.07 1.32 6.21 -2.39 -0.01 1.31 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.41 6.25 -2.39 -0.01 1.40 16 43 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.16 1.73 7.72 -2.39 -0.02 1.71 16 46 H 0.15 2.09 7.72 -2.39 -0.02 2.07 16 47 H 0.08 3.62 7.84 -2.38 -0.02 3.60 16 48 H 0.08 3.66 7.83 -2.39 -0.02 3.65 16 49 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 50 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 51 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 52 H 0.08 1.33 8.03 -2.38 -0.02 1.31 16 53 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -80.67 413.36 3.06 -77.62 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.86 Total: 11.72 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.53 Total: 3.54 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -5.26 Total: -98.11 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.67 3.06 -77.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272471442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.081 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds