Wall clock time and date at job start Tue Mar 31 2020 19:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00310 * 2 1 4 4 C 1.52997 * 109.47190 * 124.99944 * 3 2 1 5 5 C 1.53009 * 109.47275 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47233 * 179.97438 * 5 4 3 7 7 C 1.47774 * 111.00020 * 66.04457 * 6 5 4 8 8 C 1.46226 * 112.74096 * 156.37505 * 7 6 5 9 9 O 1.44556 * 111.60761 * 59.75704 * 8 7 6 10 10 C 1.40111 * 112.37753 * 280.95248 * 9 8 7 11 11 C 1.53884 * 113.09146 * 94.34090 * 10 9 8 12 12 C 1.53570 * 110.40829 * 195.82269 * 11 10 9 13 13 C 1.51513 * 103.98376 * 218.31669 * 12 11 10 14 14 O 1.21281 * 124.94343 * 195.33748 * 13 12 11 15 15 N 1.34552 * 110.10620 * 15.34205 * 13 12 11 16 16 C 1.46499 * 124.35459 * 180.38263 * 15 13 12 17 17 C 1.53001 * 109.47088 * 270.00099 * 16 15 13 18 18 C 1.50703 * 109.46823 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00047 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99785 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47410 * 89.99795 * 22 20 18 24 24 H 1.48497 * 109.47533 * 209.99882 * 22 20 18 25 25 H 1.48499 * 109.47057 * 329.99788 * 22 20 18 26 26 C 1.47023 * 111.29340 * 0.38101 * 15 13 12 27 27 C 1.44255 * 111.00223 * 304.75107 * 6 5 4 28 28 H 1.08002 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00559 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99878 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47007 * 4.99793 * 3 2 1 32 32 H 1.09002 * 109.47333 * 244.99833 * 3 2 1 33 33 H 1.09002 * 109.47268 * 60.00009 * 4 3 2 34 34 H 1.08993 * 109.47373 * 299.99831 * 4 3 2 35 35 H 1.08993 * 109.46842 * 59.99675 * 5 4 3 36 36 H 1.09006 * 109.46602 * 300.00041 * 5 4 3 37 37 H 1.08998 * 108.82440 * 35.53805 * 7 6 5 38 38 H 1.08992 * 108.82795 * 277.22177 * 7 6 5 39 39 H 1.09001 * 109.04550 * 180.30202 * 8 7 6 40 40 H 1.09002 * 109.05535 * 299.20710 * 8 7 6 41 41 H 1.09003 * 108.75889 * 215.27833 * 10 9 8 42 42 H 1.09008 * 108.75778 * 333.40775 * 10 9 8 43 43 H 1.09003 * 110.53133 * 336.94392 * 12 11 10 44 44 H 1.09000 * 110.52829 * 99.69307 * 12 11 10 45 45 H 1.09001 * 109.46841 * 29.99674 * 16 15 13 46 46 H 1.08997 * 109.47549 * 149.99747 * 16 15 13 47 47 H 1.09001 * 109.46933 * 299.99519 * 17 16 15 48 48 H 1.08997 * 109.47213 * 59.99443 * 17 16 15 49 49 H 0.96999 * 120.00253 * 179.97438 * 21 20 18 50 50 H 1.09008 * 110.28023 * 224.99230 * 26 15 13 51 51 H 1.09004 * 110.36436 * 102.93535 * 26 15 13 52 52 H 1.09000 * 108.92557 * 95.64801 * 27 6 5 53 53 H 1.08998 * 108.92322 * 337.07492 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 7 4.7329 2.6848 2.3161 7 6 5.7919 1.6667 2.1559 8 6 7.0041 1.9888 2.9076 9 8 6.7387 2.0972 4.3245 10 6 6.1608 3.3269 4.6664 11 6 4.6236 3.2779 4.7177 12 6 4.0417 4.6990 4.7036 13 6 2.8658 4.6227 5.6560 14 8 1.9801 5.4476 5.7337 15 7 2.9474 3.5066 6.4031 16 6 1.9670 3.1192 7.4203 17 6 2.3754 3.7072 8.7725 18 6 1.3665 3.3092 9.8187 19 1 0.5185 2.6983 9.5464 20 6 1.5260 3.7249 11.1236 21 7 2.5588 4.4683 11.4553 22 14 0.2750 3.2321 12.4204 23 1 0.6854 1.9470 13.0411 24 1 0.2033 4.2855 13.4646 25 1 -1.0583 3.0721 11.7864 26 6 4.1471 2.7258 6.0672 27 6 4.0409 2.4482 3.5595 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7399 0.5064 1.0921 34 1 2.4773 1.2355 2.1129 35 1 3.0960 3.4845 1.2705 36 1 4.3584 2.7547 0.2498 37 1 6.0448 1.5856 1.0987 38 1 5.4103 0.7052 2.4988 39 1 7.7435 1.2050 2.7431 40 1 7.4052 2.9361 2.5473 41 1 6.5347 3.6302 5.6443 42 1 6.4634 4.0729 3.9314 43 1 4.7786 5.4174 5.0628 44 1 3.7051 4.9643 3.7013 45 1 0.9842 3.4990 7.1409 46 1 1.9291 2.0323 7.4933 47 1 3.3582 3.3274 9.0518 48 1 2.4133 4.7941 8.6995 49 1 2.6709 4.7611 12.3732 50 1 3.8967 1.6688 5.9761 51 1 4.9165 2.8672 6.8263 52 1 4.1157 1.3900 3.8099 53 1 2.9895 2.7065 3.4336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273487915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:15 Heat of formation + Delta-G solvation = -58.642019 kcal Electronic energy + Delta-G solvation = -30450.649781 eV Core-core repulsion = 26515.600665 eV Total energy + Delta-G solvation = -3935.049116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98378 -39.24218 -37.55335 -36.12689 -35.52023 -34.29112 -32.60628 -31.79036 -30.30889 -29.00196 -27.85447 -26.76015 -25.90815 -24.79673 -23.79689 -22.73722 -21.27814 -20.94810 -20.13225 -19.45560 -18.80491 -17.14910 -16.91185 -16.47634 -16.17936 -15.83478 -15.54416 -15.32004 -14.99528 -14.68288 -14.61631 -14.37942 -14.14507 -14.09409 -13.48795 -13.35707 -13.16134 -12.91958 -12.69683 -12.54383 -12.50903 -12.24627 -12.18956 -11.89261 -11.62476 -11.47382 -11.32386 -11.26993 -11.21862 -10.95523 -10.93640 -10.80134 -10.67198 -10.61442 -9.96328 -9.90729 -9.75362 -9.68979 -9.29579 -9.06078 -8.65165 -8.34809 -7.96560 -5.99818 -4.03194 1.95126 3.11268 3.32961 3.38959 3.42472 3.47990 3.61786 3.69270 4.34959 4.42691 4.47714 4.51665 4.58459 4.59209 4.74582 4.79600 4.89657 4.90734 4.98696 5.08596 5.15653 5.17718 5.19779 5.30127 5.36314 5.41318 5.48040 5.50363 5.52913 5.56517 5.58638 5.62613 5.68774 5.71966 5.73705 5.87594 5.89933 5.95818 6.10279 6.12784 6.29397 6.42786 6.49774 6.69116 6.77497 6.85012 7.04921 7.05531 7.56662 7.70477 7.90042 8.00475 8.36689 8.74157 9.03655 9.60674 11.11670 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002822 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.554826 B = 9918.280675 C =11366.593168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.090 4.090 4 C -0.154 4.154 5 C 0.056 3.944 6 N -0.526 5.526 7 C 0.017 3.983 8 C 0.060 3.940 9 O -0.368 6.368 10 C 0.083 3.917 11 C -0.090 4.090 12 C -0.137 4.137 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.611 5.611 16 C 0.128 3.872 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.117 3.883 27 C 0.070 3.930 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.017 0.983 48 H 0.021 0.979 49 H 0.261 0.739 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.051 0.949 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -8.079 -26.033 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C -0.128 4.128 4 C -0.193 4.193 5 C -0.072 4.072 6 N -0.248 5.248 7 C -0.111 4.111 8 C -0.016 4.016 9 O -0.285 6.285 10 C 0.005 3.995 11 C -0.092 4.092 12 C -0.177 4.177 13 C 0.297 3.703 14 O -0.415 6.415 15 N -0.344 5.344 16 C 0.008 3.992 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.007 4.007 27 C -0.059 4.059 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.069 0.931 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.411 -7.248 -25.626 27.928 hybrid contribution -1.134 -1.000 0.683 1.659 sum 7.278 -8.248 -24.943 27.261 Atomic orbital electron populations 1.23892 0.96029 1.01957 1.01117 1.22952 0.96074 0.98474 0.99973 1.20688 0.98139 0.95557 0.98442 1.22287 0.98723 0.99145 0.99186 1.22389 0.94506 0.96743 0.93563 1.61892 1.12658 1.47980 1.02240 1.21774 0.94094 0.94227 1.00958 1.21716 0.95982 1.02331 0.81596 1.87887 1.80354 1.37300 1.22997 1.22190 0.89875 0.86183 1.01266 1.22045 0.97206 0.95359 0.94601 1.22214 0.97609 0.96835 1.01036 1.20826 0.86619 0.81234 0.81611 1.90703 1.38528 1.42152 1.70105 1.48653 1.24571 1.23200 1.38004 1.21783 0.90121 0.98950 0.88334 1.19404 0.96987 0.96897 0.89325 1.21094 1.09182 1.32588 0.93208 0.92521 1.25000 0.95616 0.95009 0.98659 1.69974 1.28837 1.35784 1.18570 0.86554 0.81771 0.78124 0.81317 1.20643 1.21184 1.19801 1.21999 0.88019 0.96038 0.94656 1.21870 0.97329 0.98274 0.88454 0.88514 0.88566 0.87610 0.91318 0.91039 0.91774 0.91375 0.90233 0.90482 0.90296 0.93354 0.88973 0.92134 0.89744 0.91906 0.88141 0.88165 0.91239 0.91793 0.96437 0.96085 0.92946 0.90721 0.90564 0.93075 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 14.32 29.02 0.42 -1.04 16 2 C -0.16 -1.15 9.52 -36.03 -0.34 -1.50 16 3 C -0.09 -0.60 5.66 -27.89 -0.16 -0.76 16 4 C -0.15 -1.09 4.62 -26.73 -0.12 -1.21 16 5 C 0.06 0.39 5.10 -3.82 -0.02 0.37 16 6 N -0.53 -4.36 4.54 -239.49 -1.09 -5.45 16 7 C 0.02 0.12 4.25 -6.56 -0.03 0.09 16 8 C 0.06 0.45 6.36 33.94 0.22 0.66 16 9 O -0.37 -3.84 10.45 -33.20 -0.35 -4.19 16 10 C 0.08 0.85 4.88 37.62 0.18 1.03 16 11 C -0.09 -1.04 0.82 -153.07 -0.13 -1.17 16 12 C -0.14 -1.81 5.80 -27.19 -0.16 -1.97 16 13 C 0.51 9.63 8.04 -10.69 -0.09 9.54 16 14 O -0.54 -12.59 17.60 5.56 0.10 -12.49 16 15 N -0.61 -11.28 2.94 -172.74 -0.51 -11.79 16 16 C 0.13 2.78 5.87 -4.04 -0.02 2.76 16 17 C 0.01 0.31 5.30 -27.88 -0.15 0.17 16 18 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 22 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.12 1.67 6.47 -3.55 -0.02 1.65 16 27 C 0.07 0.71 2.74 -4.76 -0.01 0.70 16 28 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 29 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 7.10 -51.93 -0.37 0.07 16 34 H 0.07 0.60 6.69 -51.93 -0.35 0.26 16 35 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 37 H 0.08 0.43 7.69 -51.93 -0.40 0.03 16 38 H 0.05 0.38 6.81 -51.93 -0.35 0.02 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 41 H 0.08 0.88 7.61 -51.93 -0.40 0.48 16 42 H 0.06 0.58 7.14 -51.92 -0.37 0.21 16 43 H 0.10 1.23 7.85 -51.93 -0.41 0.82 16 44 H 0.10 1.23 7.86 -51.93 -0.41 0.82 16 45 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.07 1.00 7.62 -51.92 -0.40 0.60 16 51 H 0.08 1.13 7.51 -51.93 -0.39 0.74 16 52 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 53 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -34.05 411.28 -10.26 -44.31 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -9.48 Total: -2.50 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.84 Total: -4.41 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.86 Total: -43.91 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.25 Total: -16.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.05 -10.26 -44.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273487915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.331 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds