Wall clock time and date at job start Tue Mar 31 2020 19:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00310 * 2 1 4 4 C 1.52997 * 109.47190 * 124.99944 * 3 2 1 5 5 C 1.53009 * 109.47275 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47233 * 179.97438 * 5 4 3 7 7 C 1.47774 * 111.00020 * 66.04457 * 6 5 4 8 8 C 1.46226 * 112.74096 * 156.37505 * 7 6 5 9 9 O 1.44556 * 111.60761 * 59.75704 * 8 7 6 10 10 C 1.40111 * 112.37753 * 280.95248 * 9 8 7 11 11 C 1.53884 * 113.09146 * 94.34090 * 10 9 8 12 12 C 1.53570 * 110.40829 * 195.82269 * 11 10 9 13 13 C 1.51513 * 103.98376 * 218.31669 * 12 11 10 14 14 O 1.21281 * 124.94343 * 195.33748 * 13 12 11 15 15 N 1.34552 * 110.10620 * 15.34205 * 13 12 11 16 16 C 1.46499 * 124.35459 * 180.38263 * 15 13 12 17 17 C 1.53001 * 109.47088 * 270.00099 * 16 15 13 18 18 C 1.50703 * 109.46823 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00047 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99785 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47410 * 89.99795 * 22 20 18 24 24 H 1.48497 * 109.47533 * 209.99882 * 22 20 18 25 25 H 1.48499 * 109.47057 * 329.99788 * 22 20 18 26 26 C 1.47023 * 111.29340 * 0.38101 * 15 13 12 27 27 C 1.44255 * 111.00223 * 304.75107 * 6 5 4 28 28 H 1.08002 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00559 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99878 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47007 * 4.99793 * 3 2 1 32 32 H 1.09002 * 109.47333 * 244.99833 * 3 2 1 33 33 H 1.09002 * 109.47268 * 60.00009 * 4 3 2 34 34 H 1.08993 * 109.47373 * 299.99831 * 4 3 2 35 35 H 1.08993 * 109.46842 * 59.99675 * 5 4 3 36 36 H 1.09006 * 109.46602 * 300.00041 * 5 4 3 37 37 H 1.08998 * 108.82440 * 35.53805 * 7 6 5 38 38 H 1.08992 * 108.82795 * 277.22177 * 7 6 5 39 39 H 1.09001 * 109.04550 * 180.30202 * 8 7 6 40 40 H 1.09002 * 109.05535 * 299.20710 * 8 7 6 41 41 H 1.09003 * 108.75889 * 215.27833 * 10 9 8 42 42 H 1.09008 * 108.75778 * 333.40775 * 10 9 8 43 43 H 1.09003 * 110.53133 * 336.94392 * 12 11 10 44 44 H 1.09000 * 110.52829 * 99.69307 * 12 11 10 45 45 H 1.09001 * 109.46841 * 29.99674 * 16 15 13 46 46 H 1.08997 * 109.47549 * 149.99747 * 16 15 13 47 47 H 1.09001 * 109.46933 * 299.99519 * 17 16 15 48 48 H 1.08997 * 109.47213 * 59.99443 * 17 16 15 49 49 H 0.96999 * 120.00253 * 179.97438 * 21 20 18 50 50 H 1.09008 * 110.28023 * 224.99230 * 26 15 13 51 51 H 1.09004 * 110.36436 * 102.93535 * 26 15 13 52 52 H 1.09000 * 108.92557 * 95.64801 * 27 6 5 53 53 H 1.08998 * 108.92322 * 337.07492 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 7 4.7329 2.6848 2.3161 7 6 5.7919 1.6667 2.1559 8 6 7.0041 1.9888 2.9076 9 8 6.7387 2.0972 4.3245 10 6 6.1608 3.3269 4.6664 11 6 4.6236 3.2779 4.7177 12 6 4.0417 4.6990 4.7036 13 6 2.8658 4.6227 5.6560 14 8 1.9801 5.4476 5.7337 15 7 2.9474 3.5066 6.4031 16 6 1.9670 3.1192 7.4203 17 6 2.3754 3.7072 8.7725 18 6 1.3665 3.3092 9.8187 19 1 0.5185 2.6983 9.5464 20 6 1.5260 3.7249 11.1236 21 7 2.5588 4.4683 11.4553 22 14 0.2750 3.2321 12.4204 23 1 0.6854 1.9470 13.0411 24 1 0.2033 4.2855 13.4646 25 1 -1.0583 3.0721 11.7864 26 6 4.1471 2.7258 6.0672 27 6 4.0409 2.4482 3.5595 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7399 0.5064 1.0921 34 1 2.4773 1.2355 2.1129 35 1 3.0960 3.4845 1.2705 36 1 4.3584 2.7547 0.2498 37 1 6.0448 1.5856 1.0987 38 1 5.4103 0.7052 2.4988 39 1 7.7435 1.2050 2.7431 40 1 7.4052 2.9361 2.5473 41 1 6.5347 3.6302 5.6443 42 1 6.4634 4.0729 3.9314 43 1 4.7786 5.4174 5.0628 44 1 3.7051 4.9643 3.7013 45 1 0.9842 3.4990 7.1409 46 1 1.9291 2.0323 7.4933 47 1 3.3582 3.3274 9.0518 48 1 2.4133 4.7941 8.6995 49 1 2.6709 4.7611 12.3732 50 1 3.8967 1.6688 5.9761 51 1 4.9165 2.8672 6.8263 52 1 4.1157 1.3900 3.8099 53 1 2.9895 2.7065 3.4336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273487915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:14 Heat of formation + Delta-G solvation = -80.885632 kcal Electronic energy + Delta-G solvation = -30451.614336 eV Core-core repulsion = 26515.600665 eV Total energy + Delta-G solvation = -3936.013671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05281 -40.32788 -38.22894 -37.55689 -36.22759 -35.95360 -34.43683 -32.37714 -31.76892 -30.16831 -28.98900 -27.52564 -27.31909 -26.08814 -24.86193 -23.43815 -23.12121 -21.68511 -20.69398 -20.40602 -20.28000 -18.70396 -17.93003 -17.67850 -17.05494 -16.85271 -16.66754 -16.51501 -16.40246 -16.14247 -15.52827 -15.33798 -15.00614 -14.82811 -14.74995 -14.58917 -14.31031 -14.12648 -14.09047 -13.89517 -13.54969 -13.37527 -13.20699 -12.87172 -12.84980 -12.69095 -12.59653 -12.31110 -12.25512 -12.05427 -12.00682 -11.86207 -11.80798 -11.73704 -11.50762 -11.45388 -11.34621 -10.85841 -10.61447 -10.42532 -10.26356 -9.60809 -9.30352 -8.24903 -6.38011 1.37831 1.38189 1.40623 1.51524 1.60291 2.12181 2.40654 2.81832 2.97026 3.08469 3.33701 3.51627 3.69659 3.81902 3.87975 4.01489 4.17138 4.23292 4.28260 4.29750 4.35309 4.41349 4.46359 4.48448 4.55015 4.55937 4.61122 4.65720 4.68882 4.71565 4.76231 4.77813 4.83728 4.88249 4.90627 4.97167 4.98837 5.01569 5.08137 5.18421 5.21402 5.30480 5.35014 5.43920 5.57359 5.73728 5.80081 5.86812 6.06091 6.10299 6.13529 6.28029 6.36740 6.77138 7.20094 7.31872 8.87464 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.002822 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.554826 B = 9918.280675 C =11366.593168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.146 4.146 5 C 0.058 3.942 6 N -0.527 5.527 7 C 0.018 3.982 8 C 0.055 3.945 9 O -0.385 6.385 10 C 0.089 3.911 11 C -0.077 4.077 12 C -0.120 4.120 13 C 0.497 3.503 14 O -0.592 6.592 15 N -0.615 5.615 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.264 1.264 26 C 0.112 3.888 27 C 0.080 3.920 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.000 1.000 48 H -0.026 1.026 49 H 0.265 0.735 50 H 0.087 0.913 51 H 0.071 0.929 52 H 0.048 0.952 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -9.561 -27.652 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.179 4.179 3 C -0.126 4.126 4 C -0.185 4.185 5 C -0.069 4.069 6 N -0.249 5.249 7 C -0.109 4.109 8 C -0.021 4.021 9 O -0.303 6.303 10 C 0.011 3.989 11 C -0.079 4.079 12 C -0.159 4.159 13 C 0.286 3.714 14 O -0.474 6.474 15 N -0.347 5.347 16 C 0.020 3.980 17 C -0.014 4.014 18 C -0.585 4.585 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.010 4.010 27 C -0.049 4.049 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.018 0.982 48 H -0.007 1.007 49 H 0.074 0.926 50 H 0.105 0.895 51 H 0.090 0.910 52 H 0.066 0.934 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.470 -8.766 -27.279 30.177 hybrid contribution -1.404 -0.551 1.154 1.899 sum 8.066 -9.317 -26.125 28.886 Atomic orbital electron populations 1.24010 0.96401 1.02207 1.01705 1.23133 0.96149 0.99148 0.99458 1.20684 0.98020 0.94952 0.98964 1.22185 0.98614 0.99466 0.98227 1.22406 0.94405 0.96264 0.93840 1.61871 1.12906 1.48580 1.01588 1.21816 0.93361 0.93347 1.02395 1.21949 0.96585 1.03593 0.79983 1.87875 1.80142 1.37173 1.25103 1.22094 0.88267 0.86836 1.01726 1.22011 0.98502 0.93955 0.93457 1.22167 0.95272 0.98464 1.00037 1.21846 0.87280 0.80229 0.82040 1.90659 1.40989 1.43898 1.71833 1.48730 1.25175 1.23887 1.36929 1.21358 0.90194 0.99721 0.86715 1.19205 0.96041 0.93974 0.92159 1.21546 1.09857 1.32943 0.94130 0.91585 1.26031 0.97782 0.94693 1.01281 1.70115 1.30891 1.36848 1.19370 0.85354 0.79023 0.78187 0.77923 1.19072 1.20820 1.18778 1.22250 0.86140 0.96355 0.96250 1.21693 0.96548 0.97609 0.89095 0.88751 0.88033 0.86896 0.91975 0.89477 0.91096 0.93569 0.91134 0.88395 0.87881 0.93991 0.87145 0.91177 0.90173 0.90294 0.86639 0.86590 0.92854 0.89479 0.98174 1.00721 0.92639 0.89490 0.91039 0.93385 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.00 14.32 67.78 0.97 -2.03 16 2 C -0.16 -2.18 9.52 25.65 0.24 -1.94 16 3 C -0.09 -1.04 5.66 29.84 0.17 -0.87 16 4 C -0.15 -1.81 4.62 30.60 0.14 -1.67 16 5 C 0.06 0.68 5.10 86.31 0.44 1.12 16 6 N -0.53 -7.39 4.54 -911.61 -4.14 -11.53 16 7 C 0.02 0.20 4.25 84.05 0.36 0.55 16 8 C 0.05 0.63 6.36 69.90 0.44 1.08 16 9 O -0.38 -7.11 10.45 -141.72 -1.48 -8.59 16 10 C 0.09 1.64 4.88 72.28 0.35 1.99 16 11 C -0.08 -1.69 0.82 -51.25 -0.04 -1.74 16 12 C -0.12 -3.08 5.80 30.30 0.18 -2.90 16 13 C 0.50 19.32 8.04 87.95 0.71 20.03 16 14 O -0.59 -29.12 17.60 -3.03 -0.05 -29.17 16 15 N -0.62 -23.37 2.94 -818.94 -2.41 -25.78 16 16 C 0.14 6.37 5.87 86.38 0.51 6.88 16 17 C 0.02 1.36 5.30 29.85 0.16 1.52 16 18 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 19 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 20 C 0.00 0.01 5.46 84.65 0.46 0.48 16 21 N -0.93 -58.64 13.29 21.45 0.28 -58.36 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.11 3.20 6.47 86.41 0.56 3.76 16 27 C 0.08 1.52 2.74 87.11 0.24 1.76 16 28 H 0.09 1.37 7.84 -2.91 -0.02 1.35 16 29 H 0.10 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.06 0.81 7.79 -2.39 -0.02 0.79 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.79 7.10 -2.39 -0.02 0.77 16 34 H 0.05 0.78 6.69 -2.39 -0.02 0.77 16 35 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 36 H 0.10 0.78 7.90 -2.38 -0.02 0.76 16 37 H 0.10 0.67 7.69 -2.39 -0.02 0.65 16 38 H 0.04 0.53 6.81 -2.39 -0.02 0.52 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.70 7.45 -2.39 -0.02 0.68 16 41 H 0.08 1.55 7.61 -2.39 -0.02 1.53 16 42 H 0.08 1.21 7.14 -2.38 -0.02 1.20 16 43 H 0.12 2.68 7.85 -2.39 -0.02 2.66 16 44 H 0.12 2.67 7.86 -2.39 -0.02 2.66 16 45 H 0.05 2.55 7.93 -2.39 -0.02 2.53 16 46 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 47 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 49 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.09 2.26 7.62 -2.38 -0.02 2.25 16 51 H 0.07 2.12 7.51 -2.39 -0.02 2.10 16 52 H 0.05 0.96 6.70 -2.39 -0.02 0.94 16 53 H 0.05 1.23 6.77 -2.39 -0.02 1.21 16 Total: -1.00 -76.86 411.28 1.20 -75.66 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.86 Total: 14.37 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.12 Total: -3.98 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -6.27 Total: -95.67 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.53 Total: -37.76 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.86 1.20 -75.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273487915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.227 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds