Wall clock time and date at job start Tue Mar 31 2020 19:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 C 1.52998 * 109.47166 * 239.99697 * 2 1 3 5 5 C 1.52997 * 109.46805 * 119.99851 * 2 1 3 6 6 N 1.46901 * 109.47442 * 61.19038 * 5 2 1 7 7 C 1.46846 * 111.00074 * 272.99650 * 6 5 2 8 8 C 1.53048 * 109.61938 * 173.76130 * 7 6 5 9 9 C 1.53226 * 109.20500 * 59.63953 * 8 7 6 10 10 C 1.52532 * 109.20077 * 303.22660 * 9 8 7 11 11 C 1.53736 * 110.30020 * 178.66127 * 10 9 8 12 12 C 1.51451 * 103.35965 * 118.45656 * 11 10 9 13 13 O 1.21222 * 125.41373 * 180.23285 * 12 11 10 14 14 N 1.33965 * 109.17561 * 0.38824 * 12 11 10 15 15 C 1.46491 * 122.78150 * 179.84269 * 14 12 11 16 16 C 1.52998 * 109.47389 * 269.70920 * 15 14 12 17 17 C 1.50695 * 109.47463 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99746 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00545 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47060 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47148 * 299.99953 * 21 19 17 24 24 H 1.48501 * 109.47392 * 60.00094 * 21 19 17 25 25 C 1.34057 * 114.42720 * 359.57623 * 14 12 11 26 26 O 1.21230 * 125.49715 * 180.30060 * 25 14 12 27 27 C 1.46955 * 111.00357 * 148.84293 * 6 5 2 28 28 H 1.08996 * 109.47012 * 288.85658 * 1 2 3 29 29 H 1.09003 * 109.46957 * 48.85693 * 1 2 3 30 30 H 1.09000 * 109.46934 * 168.85203 * 1 2 3 31 31 H 1.08995 * 109.46981 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46686 * 299.99745 * 3 2 1 33 33 H 1.08995 * 109.47257 * 59.99511 * 3 2 1 34 34 H 1.08995 * 109.47417 * 300.00248 * 4 2 1 35 35 H 1.09004 * 109.47183 * 60.00443 * 4 2 1 36 36 H 1.08995 * 109.47021 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47367 * 301.19086 * 5 2 1 38 38 H 1.08998 * 109.46979 * 181.18885 * 5 2 1 39 39 H 1.09002 * 109.44821 * 53.71378 * 7 6 5 40 40 H 1.09009 * 109.44452 * 293.80361 * 7 6 5 41 41 H 1.08995 * 109.50906 * 299.72083 * 8 7 6 42 42 H 1.08993 * 109.51464 * 179.55985 * 8 7 6 43 43 H 1.09000 * 109.51473 * 183.30963 * 9 8 7 44 44 H 1.08995 * 109.56100 * 63.17325 * 9 8 7 45 45 H 1.09001 * 110.64683 * 237.14387 * 11 10 9 46 46 H 1.09005 * 110.64104 * 0.04956 * 11 10 9 47 47 H 1.09008 * 109.47017 * 149.71383 * 15 14 12 48 48 H 1.08997 * 109.47458 * 29.71750 * 15 14 12 49 49 H 1.08999 * 109.47221 * 60.00316 * 16 15 14 50 50 H 1.09002 * 109.47026 * 300.00248 * 16 15 14 51 51 H 0.97002 * 119.99722 * 359.97438 * 20 19 17 52 52 H 1.09003 * 109.44862 * 64.80329 * 27 6 5 53 53 H 1.09001 * 109.44851 * 304.88091 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.5739 -2.1143 1.2350 7 6 0.2426 -2.2301 1.8437 8 6 -0.2776 -3.6593 1.6738 9 6 0.6911 -4.6325 2.3538 10 6 2.0849 -4.4481 1.7624 11 6 3.0855 -5.3905 2.4511 12 6 3.5748 -6.2692 1.3187 13 8 4.3839 -7.1657 1.4246 14 7 2.9741 -5.8961 0.1810 15 6 3.2343 -6.5488 -1.1044 16 6 4.3887 -5.8376 -1.8131 17 6 4.6560 -6.5087 -3.1357 18 1 4.0621 -7.3579 -3.4401 19 6 5.6593 -6.0394 -3.9567 20 7 6.3835 -5.0063 -3.5853 21 14 5.9910 -6.8717 -5.5957 22 1 7.1123 -6.1821 -6.2831 23 1 6.3522 -8.2935 -5.3648 24 1 4.7728 -6.8016 -6.4421 25 6 2.1109 -4.8795 0.3174 26 8 1.4563 -4.3871 -0.5763 27 6 2.5399 -2.9997 1.9002 28 1 -0.3633 0.3321 0.9725 29 1 -0.3633 0.6762 -0.7739 30 1 -0.3633 -1.0083 -0.1987 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.6593 -0.2199 2.1391 38 1 3.1297 -0.7028 1.2600 39 1 -0.4410 -1.5347 1.3565 40 1 0.3069 -1.9911 2.9054 41 1 -0.3478 -3.8974 0.6125 42 1 -1.2624 -3.7454 2.1330 43 1 0.3567 -5.6562 2.1856 44 1 0.7200 -4.4302 3.4244 45 1 3.9092 -4.8248 2.8864 46 1 2.5870 -5.9895 3.2133 47 1 2.3399 -6.4976 -1.7255 48 1 3.4996 -7.5923 -0.9349 49 1 5.2830 -5.8888 -1.1921 50 1 4.1233 -4.7941 -1.9827 51 1 6.2115 -4.5743 -2.7340 52 1 2.6042 -2.7384 2.9565 53 1 3.5195 -2.8812 1.4371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273532511.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:50 Heat of formation + Delta-G solvation = -100.116876 kcal Electronic energy + Delta-G solvation = -31891.239016 eV Core-core repulsion = 27954.391416 eV Total energy + Delta-G solvation = -3936.847601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.26315 -40.42069 -39.40143 -37.80468 -37.03452 -35.99780 -34.52280 -33.15694 -31.58593 -29.02419 -28.07567 -28.06283 -27.29314 -26.77837 -25.23151 -24.04843 -23.89491 -22.60371 -21.63942 -19.77722 -19.62360 -19.16917 -18.02496 -17.51702 -17.33624 -16.80210 -16.21609 -16.00791 -15.91882 -15.69507 -15.47205 -15.19368 -15.13143 -14.91696 -14.78257 -14.67121 -14.44817 -14.32989 -13.89089 -13.76520 -13.59950 -13.47262 -13.11061 -12.93900 -12.80419 -12.78159 -12.61806 -12.47871 -12.35592 -12.24252 -12.00683 -11.95622 -11.91422 -11.62378 -11.57114 -11.44861 -11.31544 -11.01890 -10.87566 -10.72301 -10.63909 -10.58903 -9.02128 -8.80964 -6.52190 0.53887 1.47484 1.56491 1.58064 1.77316 1.79721 2.51727 2.78693 3.06326 3.10898 3.21558 3.45679 3.59290 3.87440 3.93834 3.99554 4.00938 4.14086 4.19200 4.22645 4.27982 4.37349 4.41637 4.50123 4.52296 4.57666 4.58165 4.66241 4.67790 4.75059 4.77347 4.81937 4.82288 4.88411 4.95175 4.97780 5.05685 5.07166 5.08398 5.09190 5.15593 5.24187 5.25930 5.38011 5.50434 5.54941 5.62595 5.79740 5.93646 6.02844 6.20926 6.32367 6.39535 6.41044 6.83941 7.31400 8.59520 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.004100 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.214236 B = 6827.545514 C = 8615.412891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.128 4.128 5 C 0.070 3.930 6 N -0.549 5.549 7 C 0.046 3.954 8 C -0.126 4.126 9 C -0.094 4.094 10 C -0.079 4.079 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.529 6.529 14 N -0.584 5.584 15 C 0.124 3.876 16 C 0.016 3.984 17 C -0.622 4.622 18 H 0.058 0.942 19 C -0.036 4.036 20 N -0.930 5.930 21 Si 1.122 2.878 22 H -0.280 1.280 23 H -0.265 1.265 24 H -0.266 1.266 25 C 0.528 3.472 26 O -0.482 6.482 27 C 0.078 3.922 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.144 0.856 46 H 0.160 0.840 47 H 0.078 0.922 48 H 0.077 0.923 49 H -0.017 1.017 50 H -0.016 1.016 51 H 0.251 0.749 52 H 0.088 0.912 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 9.900 19.207 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.186 4.186 5 C -0.057 4.057 6 N -0.273 5.273 7 C -0.081 4.081 8 C -0.164 4.164 9 C -0.131 4.131 10 C -0.082 4.082 11 C -0.170 4.170 12 C 0.306 3.694 13 O -0.405 6.405 14 N -0.327 5.327 15 C 0.003 3.997 16 C -0.021 4.021 17 C -0.660 4.660 18 H 0.077 0.923 19 C -0.233 4.233 20 N -0.567 5.567 21 Si 0.942 3.058 22 H -0.205 1.205 23 H -0.190 1.190 24 H -0.191 1.191 25 C 0.317 3.683 26 O -0.353 6.353 27 C -0.050 4.050 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.178 0.822 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.001 0.999 50 H 0.002 0.998 51 H 0.060 0.940 52 H 0.106 0.894 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.470 9.597 16.937 24.256 hybrid contribution -0.266 -0.014 1.299 1.326 sum -14.735 9.583 18.236 25.328 Atomic orbital electron populations 1.21990 0.94032 1.01416 1.01785 1.20486 0.96323 0.94720 0.94344 1.21830 1.00671 0.94632 1.02380 1.21686 0.98985 1.00603 0.97287 1.22137 0.99187 0.87415 0.96983 1.61647 1.02807 1.06705 1.56155 1.22531 0.90055 0.97791 0.97712 1.21706 0.99023 0.94461 1.01171 1.21544 0.89351 1.00508 1.01723 1.21214 0.99961 0.97332 0.89738 1.22725 1.01261 0.96937 0.96094 1.21797 0.78648 0.83297 0.85707 1.90729 1.32435 1.31915 1.85372 1.47323 1.40486 1.33781 1.11073 1.21488 0.99206 0.96702 0.82336 1.19239 0.92712 0.94683 0.95499 1.22300 1.21213 1.17928 1.04581 0.92321 1.27613 0.92470 0.95727 1.07506 1.70925 1.40913 1.21680 1.23150 0.82903 0.77093 0.75364 0.70489 1.20528 1.19005 1.19114 1.21223 0.76936 0.77257 0.92868 1.90693 1.42135 1.54760 1.47663 1.21921 0.94980 0.88661 0.99441 0.91144 0.93190 0.92727 0.93316 0.92630 0.91033 0.93417 0.93996 0.95446 0.91871 0.92243 0.88963 0.92862 0.93202 0.89000 0.91174 0.86397 0.83859 0.82190 0.90399 0.90410 0.99902 0.99823 0.94012 0.89386 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 6.86 71.98 0.49 -1.98 16 2 C -0.06 -1.21 0.85 -52.18 -0.04 -1.26 16 3 C -0.14 -2.39 8.45 71.98 0.61 -1.78 16 4 C -0.13 -3.82 8.28 71.98 0.60 -3.23 16 5 C 0.07 1.33 4.23 86.30 0.37 1.70 16 6 N -0.55 -11.57 2.98 -897.24 -2.68 -14.24 16 7 C 0.05 0.73 4.79 86.33 0.41 1.14 16 8 C -0.13 -2.15 5.81 30.69 0.18 -1.97 16 9 C -0.09 -1.36 4.60 30.51 0.14 -1.22 16 10 C -0.08 -1.65 0.69 -52.98 -0.04 -1.69 16 11 C -0.13 -2.44 6.30 30.33 0.19 -2.25 16 12 C 0.51 17.32 8.09 88.02 0.71 18.04 16 13 O -0.53 -22.05 17.48 -2.85 -0.05 -22.10 16 14 N -0.58 -22.42 2.56 -756.75 -1.94 -24.36 16 15 C 0.12 5.83 5.50 86.38 0.48 6.30 16 16 C 0.02 0.95 4.61 29.85 0.14 1.08 16 17 C -0.62 -37.95 9.11 25.60 0.23 -37.72 16 18 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 19 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 20 N -0.93 -60.88 13.65 21.45 0.29 -60.58 16 21 Si 1.12 52.39 29.90 68.60 2.05 54.44 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.53 17.95 6.52 87.81 0.57 18.53 16 26 O -0.48 -19.64 15.02 -2.87 -0.04 -19.68 16 27 C 0.08 1.53 3.88 86.11 0.33 1.86 16 28 H 0.07 0.97 7.54 -2.39 -0.02 0.95 16 29 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 30 H 0.05 1.20 6.35 -2.39 -0.02 1.18 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.73 7.57 -2.39 -0.02 1.71 16 35 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.89 7.83 -2.39 -0.02 0.87 16 38 H 0.06 1.23 7.63 -2.39 -0.02 1.21 16 39 H 0.09 1.47 4.08 -2.39 -0.01 1.46 16 40 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.05 1.28 6.26 -2.39 -0.01 1.26 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.14 2.04 7.72 -2.39 -0.02 2.02 16 46 H 0.16 1.73 7.72 -2.38 -0.02 1.71 16 47 H 0.08 3.65 7.84 -2.38 -0.02 3.63 16 48 H 0.08 3.64 7.83 -2.39 -0.02 3.62 16 49 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 50 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 51 H 0.25 16.86 7.22 -92.71 -0.67 16.19 16 52 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 Total: -1.00 -82.19 403.71 4.44 -77.75 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.97 Total: 14.94 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.83 Total: -6.17 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.32 Total: -99.18 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.09 Total: -41.78 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -82.19 4.44 -77.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273532511.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.366 kcal (2) G-P(sol) polarization free energy of solvation -82.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds