Wall clock time and date at job start Tue Mar 31 2020 19:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46682 * 2 1 4 4 C 1.52993 * 109.47483 * 240.00102 * 2 1 3 5 5 C 1.50698 * 109.46875 * 119.99609 * 2 1 3 6 6 O 1.20756 * 120.00451 * 359.97438 * 5 2 1 7 7 C 1.50712 * 119.99709 * 180.02562 * 5 2 1 8 8 N 1.46898 * 109.46926 * 174.19968 * 7 5 2 9 9 C 1.48049 * 111.00103 * 183.43810 * 8 7 5 10 10 C 1.54252 * 106.83968 * 146.61046 * 9 8 7 11 11 C 1.54366 * 104.82309 * 358.54893 * 10 9 8 12 12 H 1.09008 * 110.04620 * 94.67029 * 11 10 9 13 13 C 1.48927 * 111.00339 * 300.45803 * 8 7 5 14 14 H 1.09002 * 112.07716 * 78.73143 * 13 8 7 15 15 C 1.53116 * 107.98189 * 314.48332 * 13 8 7 16 16 C 1.52920 * 109.18680 * 184.13021 * 15 13 8 17 17 C 1.50307 * 109.42153 * 52.12422 * 16 15 13 18 18 O 1.21287 * 118.67471 * 159.18641 * 17 16 15 19 19 N 1.35158 * 123.18102 * 338.93229 * 17 16 15 20 20 C 1.46502 * 118.77874 * 180.73144 * 19 17 16 21 21 C 1.53001 * 109.47078 * 270.04843 * 20 19 17 22 22 C 1.50694 * 109.47155 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00375 * 359.97438 * 22 21 20 24 24 C 1.37885 * 119.99821 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00385 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99511 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47232 * 90.00132 * 26 24 22 28 28 H 1.48502 * 109.46946 * 209.99985 * 26 24 22 29 29 H 1.48498 * 109.47444 * 329.99745 * 26 24 22 30 30 H 1.08998 * 109.47150 * 300.00018 * 1 2 3 31 31 H 1.08999 * 109.46941 * 60.00022 * 1 2 3 32 32 H 1.08996 * 109.46639 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46758 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47415 * 299.99688 * 3 2 1 35 35 H 1.08998 * 109.47343 * 60.00100 * 3 2 1 36 36 H 1.09005 * 109.46909 * 300.00136 * 4 2 1 37 37 H 1.08994 * 109.47324 * 59.99533 * 4 2 1 38 38 H 1.08995 * 109.47364 * 180.02562 * 4 2 1 39 39 H 1.08999 * 109.46829 * 54.20165 * 7 5 2 40 40 H 1.08999 * 109.46895 * 294.19837 * 7 5 2 41 41 H 1.08999 * 109.98624 * 27.26686 * 9 8 7 42 42 H 1.09001 * 110.02285 * 265.97902 * 9 8 7 43 43 H 1.09006 * 110.37218 * 239.71833 * 10 9 8 44 44 H 1.08996 * 110.46469 * 117.43133 * 10 9 8 45 45 H 1.09001 * 109.51867 * 304.04336 * 15 13 8 46 46 H 1.08996 * 109.51581 * 64.21843 * 15 13 8 47 47 H 1.09005 * 109.47971 * 172.11286 * 16 15 13 48 48 H 1.09004 * 109.48099 * 292.14048 * 16 15 13 49 49 H 1.08994 * 109.47364 * 30.04970 * 20 19 17 50 50 H 1.09000 * 109.46775 * 150.05265 * 20 19 17 51 51 H 1.09008 * 109.47090 * 300.00500 * 21 20 19 52 52 H 1.09001 * 109.46747 * 60.00040 * 21 20 19 53 53 H 0.96990 * 119.99969 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2476 -1.1688 2.0257 7 6 3.5140 -0.8475 1.4693 8 7 3.7436 -1.4484 2.7900 9 6 5.1905 -1.5236 3.0944 10 6 5.3375 -1.3256 4.6171 11 6 3.8980 -1.1006 5.1270 12 1 3.4712 -2.0434 5.4693 13 6 3.1526 -0.6085 3.8685 14 1 2.0746 -0.7469 3.9513 15 6 3.5328 0.8492 3.5945 16 6 3.0270 1.7247 4.7417 17 6 3.5002 1.1564 6.0502 18 8 3.5377 1.8830 7.0207 19 7 3.8833 -0.1308 6.2024 20 6 4.3129 -0.5870 7.5266 21 6 5.8213 -0.3773 7.6738 22 6 6.2632 -0.8472 9.0357 23 1 5.5406 -1.2542 9.7273 24 6 7.5902 -0.7565 9.3991 25 7 8.4703 -0.2604 8.5572 26 14 8.1379 -1.3383 11.0876 27 1 8.5119 -2.7738 11.0193 28 1 9.3107 -0.5416 11.5293 29 1 7.0265 -1.1618 12.0566 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1391 38 1 3.1300 -0.7216 -1.2489 39 1 3.9807 0.1368 1.4319 40 1 3.9486 -1.4852 0.6995 41 1 5.7244 -0.7358 2.5631 42 1 5.5824 -2.4989 2.8059 43 1 5.9556 -0.4529 4.8284 44 1 5.7682 -2.2150 5.0772 45 1 4.6169 0.9352 3.5214 46 1 3.0769 1.1748 2.6595 47 1 3.4135 2.7371 4.6239 48 1 1.9373 1.7476 4.7282 49 1 3.7902 -0.0168 8.2946 50 1 4.0806 -1.6460 7.6390 51 1 6.3440 -0.9475 6.9057 52 1 6.0535 0.6817 7.5613 53 1 9.4036 -0.1962 8.8130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273947795.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:23 Heat of formation + Delta-G solvation = -93.303865 kcal Electronic energy + Delta-G solvation = -31391.343465 eV Core-core repulsion = 27454.791299 eV Total energy + Delta-G solvation = -3936.552166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32877 -40.94159 -39.41233 -36.88040 -36.61902 -35.25221 -34.35996 -32.77339 -31.17596 -29.24157 -28.60140 -28.15944 -27.33536 -26.93999 -25.02999 -23.82103 -23.35209 -22.28916 -21.47075 -19.49523 -19.01975 -18.54585 -17.96600 -17.54289 -17.25306 -16.89349 -16.57581 -16.33748 -16.15095 -15.92525 -15.38771 -15.10833 -14.92136 -14.71531 -14.60647 -14.44392 -14.14992 -14.10123 -13.66583 -13.49203 -13.28799 -13.14634 -13.04633 -13.02843 -12.89757 -12.85556 -12.73939 -12.63436 -12.54292 -12.51597 -12.38798 -12.01168 -11.86801 -11.80792 -11.75828 -11.68617 -11.65181 -11.36373 -10.65631 -10.57170 -10.24168 -9.61012 -9.40203 -8.23142 -6.34480 1.07820 1.37135 1.39571 1.50256 1.56255 1.98226 2.39802 2.68014 3.10004 3.10852 3.34513 3.51370 3.61446 3.78726 3.80793 3.97714 4.04160 4.07499 4.10570 4.17415 4.26756 4.36581 4.37344 4.44951 4.49171 4.56427 4.66303 4.70122 4.70428 4.76329 4.77231 4.80079 4.85491 4.91545 4.92942 5.02138 5.02567 5.03667 5.06376 5.10142 5.22782 5.30445 5.31944 5.39585 5.42592 5.47572 5.60967 5.69278 5.81634 5.92088 6.18302 6.53643 6.68422 6.79884 7.15970 7.34062 8.88778 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.002771 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.596394 B =10100.799446 C =10589.684502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.143 4.143 4 C -0.138 4.138 5 C 0.366 3.634 6 O -0.468 6.468 7 C -0.015 4.015 8 N -0.505 5.505 9 C 0.047 3.953 10 C -0.140 4.140 11 C 0.140 3.860 12 H 0.090 0.910 13 C 0.069 3.931 14 H 0.110 0.890 15 C -0.143 4.143 16 C -0.116 4.116 17 C 0.499 3.501 18 O -0.599 6.599 19 N -0.595 5.595 20 C 0.127 3.873 21 C 0.030 3.970 22 C -0.545 4.545 23 H 0.059 0.941 24 C 0.003 3.997 25 N -0.930 5.930 26 Si 0.967 3.033 27 H -0.266 1.266 28 H -0.282 1.282 29 H -0.267 1.267 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.050 0.950 50 H 0.079 0.921 51 H 0.014 0.986 52 H -0.029 1.029 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 -0.221 -26.614 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.195 4.195 5 C 0.241 3.759 6 O -0.341 6.341 7 C -0.143 4.143 8 N -0.228 5.228 9 C -0.080 4.080 10 C -0.179 4.179 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.040 4.040 14 H 0.128 0.872 15 C -0.182 4.182 16 C -0.156 4.156 17 C 0.290 3.710 18 O -0.481 6.481 19 N -0.325 5.325 20 C 0.005 3.995 21 C -0.007 4.007 22 C -0.583 4.583 23 H 0.077 0.923 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.791 3.209 27 H -0.191 1.191 28 H -0.207 1.207 29 H -0.192 1.192 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.129 0.871 48 H 0.135 0.865 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.032 0.968 52 H -0.010 1.010 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.052 -0.601 -25.769 28.893 hybrid contribution 1.070 0.573 1.407 1.858 sum -11.983 -0.028 -24.362 27.149 Atomic orbital electron populations 1.21720 0.93241 1.01866 1.02313 1.21198 0.97299 0.97866 0.94807 1.21935 1.02340 0.92308 1.03410 1.21862 1.02420 0.99926 0.95331 1.24946 0.90608 0.74683 0.85672 1.90383 1.59548 1.38811 1.45397 1.23024 0.96145 1.02187 0.92915 1.64938 1.10748 1.46181 1.00946 1.22920 0.88264 1.03243 0.93581 1.22848 0.96449 1.02032 0.96567 1.21565 0.96264 0.91794 0.86824 0.89245 1.23029 1.00127 0.91063 0.89777 0.87212 1.22249 1.02226 0.94765 0.98969 1.21529 1.03863 1.00972 0.89207 1.21596 0.76377 0.81175 0.91882 1.90686 1.56483 1.58381 1.42528 1.47641 1.64260 1.09979 1.10653 1.21460 0.96229 0.98706 0.83138 1.19183 0.91186 0.94176 0.96201 1.21552 0.93943 1.41698 1.01155 0.92251 1.25943 0.96804 0.95161 1.01579 1.70094 1.02833 1.46395 1.37623 0.85428 0.77807 0.78624 0.79066 1.19079 1.20742 1.19180 0.93444 0.90306 0.93452 0.90421 0.89894 0.92722 0.92880 0.90055 0.90295 0.88684 0.84823 0.91625 0.88434 0.92908 0.91289 0.90978 0.87844 0.87079 0.86521 0.93122 0.90249 0.96786 1.01022 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.76 71.98 0.56 -1.07 16 2 C -0.11 -1.09 0.87 -52.93 -0.05 -1.14 16 3 C -0.14 -0.94 8.10 71.98 0.58 -0.36 16 4 C -0.14 -0.85 8.28 71.98 0.60 -0.26 16 5 C 0.37 5.65 4.89 29.11 0.14 5.80 16 6 O -0.47 -11.07 13.92 -1.44 -0.02 -11.09 16 7 C -0.01 -0.20 4.07 85.56 0.35 0.15 16 8 N -0.50 -10.21 5.10 -861.83 -4.40 -14.61 16 9 C 0.05 0.98 5.98 86.51 0.52 1.50 16 10 C -0.14 -4.20 4.54 31.48 0.14 -4.06 16 11 C 0.14 4.31 3.15 46.22 0.15 4.46 16 12 H 0.09 2.76 7.98 -2.38 -0.02 2.75 16 13 C 0.07 1.64 2.56 45.01 0.12 1.76 16 14 H 0.11 2.90 6.41 -2.39 -0.02 2.89 16 15 C -0.14 -2.96 3.99 30.61 0.12 -2.84 16 16 C -0.12 -2.96 6.07 29.70 0.18 -2.78 16 17 C 0.50 19.43 7.54 87.47 0.66 20.09 16 18 O -0.60 -29.62 16.34 -3.05 -0.05 -29.67 16 19 N -0.59 -22.93 2.50 -796.55 -1.99 -24.92 16 20 C 0.13 5.89 5.13 86.38 0.44 6.33 16 21 C 0.03 1.70 5.03 29.85 0.15 1.85 16 22 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 23 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 24 C 0.00 0.19 5.46 84.66 0.46 0.65 16 25 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 26 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 30 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.08 0.32 7.15 -2.38 -0.02 0.30 16 34 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.05 0.45 8.10 -2.39 -0.02 0.43 16 36 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.08 0.27 7.43 -2.39 -0.02 0.25 16 39 H 0.10 0.92 5.10 -2.39 -0.01 0.90 16 40 H 0.13 1.18 7.65 -2.39 -0.02 1.16 16 41 H 0.07 1.14 7.38 -2.39 -0.02 1.12 16 42 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.90 7.49 -2.38 -0.02 1.88 16 44 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 45 H 0.07 1.59 6.57 -2.39 -0.02 1.58 16 46 H 0.10 1.49 5.77 -2.39 -0.01 1.47 16 47 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 48 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.05 2.55 7.26 -2.39 -0.02 2.53 16 50 H 0.08 3.35 7.88 -2.39 -0.02 3.33 16 51 H 0.01 0.78 6.28 -2.38 -0.01 0.77 16 52 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 53 H 0.26 15.36 8.31 -92.72 -0.77 14.59 16 Total: -1.00 -79.79 398.41 2.09 -77.71 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.88 Total: 14.55 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.35 Total: -2.10 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -6.10 Total: -97.09 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.07 Total: -40.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.79 2.09 -77.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273947795.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.599 kcal (2) G-P(sol) polarization free energy of solvation -79.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds