Wall clock time and date at job start Tue Mar 31 2020 19:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.52998 * 109.47304 * 120.00314 * 2 1 3 5 5 C 1.50704 * 109.47015 * 240.00256 * 2 1 3 6 6 O 1.20756 * 120.00331 * 359.97438 * 5 2 1 7 7 C 1.50710 * 119.99920 * 180.02562 * 5 2 1 8 8 N 1.46498 * 109.46729 * 179.97438 * 7 5 2 9 9 C 1.46913 * 124.35441 * 89.99940 * 8 7 5 10 10 C 1.53835 * 105.35378 * 196.42808 * 9 8 7 11 11 C 1.53967 * 102.45031 * 335.27863 * 10 9 8 12 12 C 1.34502 * 124.35085 * 269.69410 * 8 7 5 13 13 O 1.21276 * 124.94251 * 359.60811 * 12 8 7 14 14 C 1.52234 * 110.58993 * 93.10617 * 10 9 8 15 15 C 1.53247 * 109.42100 * 180.74506 * 14 10 9 16 16 C 1.53132 * 109.06198 * 303.57692 * 15 14 10 17 17 C 1.53044 * 109.34767 * 58.32912 * 16 15 14 18 18 N 1.45966 * 110.74508 * 217.18392 * 10 9 8 19 19 C 1.46899 * 110.99969 * 52.65267 * 18 10 9 20 20 C 1.50702 * 109.47004 * 175.92315 * 19 18 10 21 21 H 1.07993 * 119.99880 * 5.15621 * 20 19 18 22 22 C 1.37874 * 119.99629 * 185.15916 * 20 19 18 23 23 N 1.31513 * 120.00299 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99907 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47087 * 89.99844 * 24 22 20 26 26 H 1.48491 * 109.47273 * 210.00013 * 24 22 20 27 27 H 1.48500 * 109.47033 * 330.00412 * 24 22 20 28 28 H 1.09006 * 109.47145 * 59.99513 * 1 2 3 29 29 H 1.08998 * 109.47061 * 299.99893 * 1 2 3 30 30 H 1.08993 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46981 * 60.00058 * 3 2 1 32 32 H 1.09003 * 109.47321 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47366 * 300.00255 * 3 2 1 34 34 H 1.08997 * 109.47444 * 59.99660 * 4 2 1 35 35 H 1.09003 * 109.47523 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.46893 * 299.99896 * 4 2 1 37 37 H 1.09004 * 109.46537 * 299.99844 * 7 5 2 38 38 H 1.08997 * 109.47109 * 59.99986 * 7 5 2 39 39 H 1.08999 * 110.26728 * 315.39890 * 9 8 7 40 40 H 1.09004 * 110.27188 * 77.36511 * 9 8 7 41 41 H 1.09005 * 110.51099 * 142.77914 * 11 10 9 42 42 H 1.09002 * 110.51088 * 265.34370 * 11 10 9 43 43 H 1.09004 * 109.47705 * 300.73228 * 14 10 9 44 44 H 1.09002 * 109.47834 * 60.76415 * 14 10 9 45 45 H 1.08998 * 109.53580 * 183.70282 * 15 14 10 46 46 H 1.09000 * 109.60439 * 63.49615 * 15 14 10 47 47 H 1.08998 * 109.49035 * 298.36856 * 16 15 14 48 48 H 1.09000 * 109.51324 * 178.29882 * 16 15 14 49 49 H 1.08999 * 109.46924 * 180.17431 * 17 16 15 50 50 H 1.08994 * 109.47376 * 60.17106 * 17 16 15 51 51 H 1.09004 * 109.46731 * 295.91864 * 19 18 10 52 52 H 1.08998 * 109.47421 * 55.91594 * 19 18 10 53 53 H 0.97003 * 119.99757 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0322 -0.7104 -1.2305 6 8 1.2476 -1.1697 -2.0252 7 6 3.5140 -0.8486 -1.4687 8 7 3.7416 -1.5725 -2.7218 9 6 3.8708 -0.9320 -4.0377 10 6 3.6744 -2.0627 -5.0621 11 6 4.0782 -3.3125 -4.2586 12 6 3.8650 -2.9087 -2.8148 13 8 3.8107 -3.6780 -1.8788 14 6 2.2159 -2.1506 -5.4895 15 6 2.0475 -3.2954 -6.4942 16 6 2.9944 -3.0672 -7.6758 17 6 4.4347 -2.9908 -7.1640 18 7 4.5573 -1.8795 -6.2100 19 6 5.9512 -1.7066 -5.7797 20 6 6.8438 -1.6208 -6.9909 21 1 6.4113 -1.6042 -7.9803 22 6 8.2126 -1.5637 -6.8357 23 7 8.7392 -1.5835 -5.6308 24 14 9.3192 -1.4581 -8.3370 25 1 9.5482 -0.0325 -8.6838 26 1 10.6197 -2.1104 -8.0402 27 1 8.6691 -2.1474 -9.4805 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 -1.7489 1.2492 35 1 3.1300 -0.7209 1.2494 36 1 1.6766 -0.2075 2.1391 37 1 3.9654 0.1415 -1.5335 38 1 3.9647 -1.4002 -0.6438 39 1 3.1015 -0.1702 -4.1639 40 1 4.8610 -0.4896 -4.1467 41 1 3.4405 -4.1570 -4.5200 42 1 5.1257 -3.5575 -4.4342 43 1 1.5919 -2.3388 -4.6158 44 1 1.9164 -1.2115 -5.9549 45 1 1.0179 -3.3184 -6.8513 46 1 2.2875 -4.2432 -6.0123 47 1 2.7355 -2.1330 -8.1742 48 1 2.9024 -3.8933 -8.3809 49 1 5.1102 -2.8253 -8.0032 50 1 4.6940 -3.9260 -6.6677 51 1 6.0404 -0.7897 -5.1969 52 1 6.2505 -2.5570 -5.1671 53 1 9.7023 -1.5436 -5.5217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030234.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:50 Heat of formation + Delta-G solvation = -86.328296 kcal Electronic energy + Delta-G solvation = -31668.426497 eV Core-core repulsion = 27732.176815 eV Total energy + Delta-G solvation = -3936.249683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43667 -40.93568 -39.50001 -36.96002 -36.69562 -35.53297 -33.89248 -33.33741 -30.25566 -29.23505 -28.79326 -28.22247 -27.89906 -26.67669 -25.63571 -23.88998 -23.22143 -22.30885 -20.74448 -19.69335 -19.45107 -18.61050 -17.99265 -17.55150 -17.08781 -16.74014 -16.51423 -16.13339 -15.94133 -15.74754 -15.54648 -15.22914 -15.00829 -14.94665 -14.66821 -14.60637 -14.13430 -14.03882 -13.85670 -13.44726 -13.31242 -13.25472 -13.18917 -13.05956 -12.99878 -12.94336 -12.75657 -12.65542 -12.57930 -12.40045 -12.11098 -11.96865 -11.90259 -11.84084 -11.58546 -11.50826 -11.23714 -11.07916 -10.90686 -10.76631 -10.54321 -9.64249 -8.95979 -8.18558 -6.26392 0.90335 1.36676 1.43674 1.44097 1.54417 1.79313 2.41581 2.92624 2.99258 3.16091 3.35047 3.61406 3.70399 3.74476 3.82402 3.88854 3.97386 4.11087 4.11517 4.25667 4.26939 4.30173 4.42773 4.47113 4.50320 4.62601 4.68710 4.70896 4.73526 4.73728 4.83292 4.93459 4.94775 4.95195 4.99558 5.02306 5.06439 5.11674 5.20291 5.21864 5.26453 5.29975 5.34758 5.35516 5.41382 5.47766 5.58194 5.68208 5.86097 6.07157 6.31676 6.45349 6.67701 6.90801 6.97409 7.42868 8.92458 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.003480 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.792220 B = 8044.539070 C = 9056.933902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.349 3.651 6 O -0.472 6.472 7 C 0.063 3.937 8 N -0.601 5.601 9 C 0.111 3.889 10 C 0.115 3.885 11 C -0.185 4.185 12 C 0.523 3.477 13 O -0.578 6.578 14 C -0.090 4.090 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.063 3.937 18 N -0.517 5.517 19 C 0.200 3.800 20 C -0.524 4.524 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.931 5.931 24 Si 0.962 3.038 25 H -0.274 1.274 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.013 0.987 51 H 0.019 0.981 52 H -0.028 1.028 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 5.702 8.799 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.223 3.777 6 O -0.345 6.345 7 C -0.059 4.059 8 N -0.332 5.332 9 C -0.011 4.011 10 C 0.023 3.977 11 C -0.226 4.226 12 C 0.312 3.688 13 O -0.458 6.458 14 C -0.128 4.128 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.065 4.065 18 N -0.240 5.240 19 C 0.074 3.926 20 C -0.563 4.563 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.571 5.571 24 Si 0.787 3.213 25 H -0.199 1.199 26 H -0.214 1.214 27 H -0.188 1.188 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.031 0.969 51 H 0.036 0.964 52 H -0.010 1.010 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.857 5.556 8.738 18.938 hybrid contribution 1.508 -0.972 -0.014 1.795 sum -14.348 4.584 8.724 17.407 Atomic orbital electron populations 1.21700 0.92627 1.01680 1.02781 1.21206 0.97793 0.98206 0.93734 1.21890 1.02340 0.91523 1.03768 1.21882 1.02132 0.99669 0.95987 1.25629 0.91005 0.74847 0.86184 1.90369 1.59267 1.39027 1.45843 1.22201 0.96210 1.00760 0.86714 1.48045 1.70147 1.06520 1.08504 1.22335 1.03193 0.95795 0.79786 1.21331 0.95606 0.90985 0.89790 1.23055 1.04105 1.02427 0.93036 1.21071 0.73967 0.82560 0.91160 1.90613 1.53889 1.56410 1.44934 1.21365 0.91657 1.00585 0.99157 1.21623 1.00457 0.97424 0.95881 1.21595 0.92790 1.02628 0.97596 1.22036 0.97879 0.90649 0.95928 1.61792 1.07427 1.42340 1.12471 1.19563 0.83595 0.94187 0.95215 1.21536 0.91187 1.49757 0.93771 0.91300 1.25801 0.99760 0.94986 0.98630 1.70079 1.12062 1.51718 1.23272 0.85493 0.77783 0.78394 0.79636 1.19929 1.21430 1.18811 0.92989 0.89585 0.94025 0.89320 0.90543 0.92366 0.93819 0.90951 0.88998 0.83724 0.86479 0.88597 0.90422 0.87697 0.89367 0.92014 0.90074 0.89596 0.92773 0.90955 0.90169 0.90931 0.96888 0.96370 1.01029 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.76 71.98 0.56 -1.63 16 2 C -0.11 -1.76 0.87 -52.93 -0.05 -1.80 16 3 C -0.14 -1.52 8.25 71.98 0.59 -0.93 16 4 C -0.14 -1.95 8.25 71.98 0.59 -1.36 16 5 C 0.35 8.43 6.04 29.11 0.18 8.61 16 6 O -0.47 -14.88 16.05 -1.44 -0.02 -14.90 16 7 C 0.06 1.55 5.69 85.64 0.49 2.04 16 8 N -0.60 -19.72 2.43 -822.88 -2.00 -21.72 16 9 C 0.11 3.66 6.37 86.58 0.55 4.21 16 10 C 0.11 3.95 0.61 4.06 0.00 3.96 16 11 C -0.18 -6.98 4.57 30.41 0.14 -6.85 16 12 C 0.52 20.53 8.04 87.93 0.71 21.24 16 13 O -0.58 -25.72 17.59 -3.02 -0.05 -25.78 16 14 C -0.09 -2.61 4.75 30.42 0.14 -2.47 16 15 C -0.12 -3.01 5.80 30.72 0.18 -2.83 16 16 C -0.11 -2.99 6.07 30.65 0.19 -2.81 16 17 C 0.06 2.31 4.94 86.30 0.43 2.73 16 18 N -0.52 -20.52 4.60 -851.07 -3.91 -24.43 16 19 C 0.20 9.85 4.18 85.56 0.36 10.21 16 20 C -0.52 -27.88 8.30 25.60 0.21 -27.66 16 21 H 0.07 3.56 6.30 -2.91 -0.02 3.54 16 22 C 0.01 0.36 5.46 84.65 0.46 0.83 16 23 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 24 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.69 7.29 -2.39 -0.02 0.67 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.91 7.29 -2.39 -0.02 0.90 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.15 2.57 7.38 -2.38 -0.02 2.55 16 38 H 0.12 2.84 7.15 -2.39 -0.02 2.82 16 39 H 0.10 2.75 7.88 -2.39 -0.02 2.73 16 40 H 0.08 2.88 5.37 -2.38 -0.01 2.86 16 41 H 0.10 3.71 6.24 -2.38 -0.01 3.70 16 42 H 0.09 3.87 5.63 -2.39 -0.01 3.85 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.45 6.57 -2.39 -0.02 1.44 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.07 2.93 5.91 -2.39 -0.01 2.92 16 50 H 0.01 0.50 7.21 -2.39 -0.02 0.48 16 51 H 0.02 0.96 5.91 -2.38 -0.01 0.95 16 52 H -0.03 -1.53 5.88 -2.39 -0.01 -1.54 16 53 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -70.11 398.68 2.95 -67.16 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.89 Total: 23.18 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.73 Total: 5.47 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -5.63 Total: -99.99 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.08 Total: -40.68 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.11 2.95 -67.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030234.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.164 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds