Wall clock time and date at job start Tue Mar 31 2020 19:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 C 1.52999 * 109.46893 * 239.99929 * 2 1 3 5 5 C 1.50703 * 109.47006 * 119.99691 * 2 1 3 6 6 O 1.20759 * 119.99816 * 0.02562 * 5 2 1 7 7 C 1.50697 * 119.99673 * 179.97438 * 5 2 1 8 8 N 1.46500 * 109.46956 * 180.02562 * 7 5 2 9 9 C 1.46923 * 124.35161 * 270.02258 * 8 7 5 10 10 C 1.53810 * 105.35677 * 196.42566 * 9 8 7 11 11 C 1.53987 * 102.45492 * 335.28551 * 10 9 8 12 12 C 1.34498 * 124.35337 * 90.02398 * 8 7 5 13 13 O 1.21280 * 124.94882 * 359.66210 * 12 8 7 14 14 C 1.52236 * 110.64461 * 217.48863 * 10 9 8 15 15 C 1.53238 * 109.42708 * 293.29395 * 14 10 9 16 16 C 1.53137 * 109.07250 * 303.59354 * 15 14 10 17 17 C 1.53042 * 109.34124 * 58.32440 * 16 15 14 18 18 N 1.45970 * 110.79223 * 93.34048 * 10 9 8 19 19 C 1.46904 * 110.99728 * 299.89937 * 18 10 9 20 20 C 1.50702 * 109.47014 * 176.26627 * 19 18 10 21 21 H 1.07997 * 120.00041 * 5.41494 * 20 19 18 22 22 C 1.37872 * 119.99940 * 185.41202 * 20 19 18 23 23 N 1.31511 * 120.00173 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46806 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46859 * 119.99967 * 24 22 20 27 27 H 1.48498 * 109.47412 * 240.00541 * 24 22 20 28 28 H 1.09006 * 109.47038 * 300.00066 * 1 2 3 29 29 H 1.09000 * 109.47670 * 59.99820 * 1 2 3 30 30 H 1.08995 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47202 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46910 * 300.00146 * 3 2 1 33 33 H 1.08997 * 109.47409 * 59.99985 * 3 2 1 34 34 H 1.08995 * 109.47125 * 300.00075 * 4 2 1 35 35 H 1.08999 * 109.47302 * 60.00224 * 4 2 1 36 36 H 1.08996 * 109.46699 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47428 * 60.00195 * 7 5 2 38 38 H 1.09002 * 109.47288 * 299.99826 * 7 5 2 39 39 H 1.09005 * 110.26499 * 77.45841 * 9 8 7 40 40 H 1.08997 * 110.27121 * 315.40495 * 9 8 7 41 41 H 1.09003 * 110.51368 * 142.77579 * 11 10 9 42 42 H 1.08998 * 110.51096 * 265.48140 * 11 10 9 43 43 H 1.09002 * 109.47722 * 53.27693 * 14 10 9 44 44 H 1.08999 * 109.47939 * 173.30691 * 14 10 9 45 45 H 1.08997 * 109.54329 * 63.47169 * 15 14 10 46 46 H 1.09002 * 109.54121 * 183.63206 * 15 14 10 47 47 H 1.08993 * 109.49258 * 178.28838 * 16 15 14 48 48 H 1.08998 * 109.48791 * 298.34233 * 16 15 14 49 49 H 1.09001 * 109.46876 * 180.16318 * 17 16 15 50 50 H 1.08999 * 109.47559 * 60.16180 * 17 16 15 51 51 H 1.08999 * 109.47121 * 296.27040 * 19 18 10 52 52 H 1.09002 * 109.46930 * 56.27391 * 19 18 10 53 53 H 0.97002 * 120.00298 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1696 2.0252 7 6 3.5139 -0.8485 1.4687 8 7 3.7416 -1.5725 2.7218 9 6 3.8705 -0.9319 4.0377 10 6 4.5031 -1.9971 4.9491 11 6 4.0969 -3.3109 4.2561 12 6 3.8597 -2.9090 2.8155 13 8 3.7874 -3.6800 1.8821 14 6 3.9089 -1.9273 6.3490 15 6 4.3166 -0.6065 7.0105 16 6 5.8442 -0.4989 7.0132 17 6 6.3605 -0.5772 5.5746 18 7 5.9558 -1.8579 4.9780 19 6 6.5266 -2.0161 3.6336 20 6 8.0133 -1.7757 3.6876 21 1 8.5004 -1.6165 4.6383 22 6 8.7517 -1.7591 2.5234 23 7 8.1585 -1.9525 1.3657 24 14 10.5945 -1.4604 2.5902 25 1 11.0145 -1.2721 4.0020 26 1 11.3065 -2.6292 2.0141 27 1 10.9273 -0.2430 1.8077 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 3.9654 0.1415 1.5334 38 1 3.9647 -1.4002 0.6437 39 1 2.8890 -0.6458 4.4161 40 1 4.5192 -0.0586 3.9707 41 1 4.9029 -4.0419 4.3208 42 1 3.1830 -3.7086 4.6971 43 1 2.8221 -1.9817 6.2857 44 1 4.2807 -2.7616 6.9438 45 1 3.8936 0.2275 6.4506 46 1 3.9465 -0.5825 8.0354 47 1 6.1410 0.4522 7.4550 48 1 6.2654 -1.3179 7.5962 49 1 7.4480 -0.5037 5.5744 50 1 5.9407 0.2434 4.9928 51 1 6.3348 -3.0271 3.2741 52 1 6.0666 -1.2963 2.9566 53 1 8.6779 -1.9405 0.5465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:53 Heat of formation + Delta-G solvation = -89.186765 kcal Electronic energy + Delta-G solvation = -32191.784772 eV Core-core repulsion = 28255.411136 eV Total energy + Delta-G solvation = -3936.373635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48270 -40.97287 -39.37506 -36.83222 -36.61065 -35.50239 -33.93321 -33.49931 -30.20347 -29.00647 -28.89681 -28.29196 -27.93918 -26.75212 -25.35009 -23.92885 -23.20542 -22.23222 -20.95068 -19.67816 -19.29358 -18.62833 -17.97374 -17.59808 -17.10220 -16.86052 -16.35688 -16.10364 -15.95175 -15.84030 -15.50843 -15.17000 -14.92212 -14.82633 -14.69370 -14.42600 -14.18561 -14.02388 -13.78744 -13.39292 -13.31340 -13.29053 -13.22500 -13.04348 -12.98546 -12.93030 -12.76329 -12.65608 -12.63474 -12.52734 -12.10228 -11.95971 -11.95595 -11.89329 -11.58884 -11.41406 -11.38742 -10.97667 -10.83720 -10.69604 -10.59745 -9.68832 -8.88102 -8.18913 -6.28812 0.81632 1.37905 1.40412 1.52054 1.52608 1.87176 2.39015 2.91253 3.11998 3.14523 3.32836 3.51584 3.65986 3.79813 3.85151 3.90406 3.96215 4.08021 4.16398 4.27436 4.33396 4.37946 4.42574 4.43747 4.52595 4.58876 4.64895 4.67645 4.73880 4.77617 4.87724 4.89012 4.89555 4.97006 4.97924 5.09524 5.10836 5.15523 5.20158 5.24257 5.28555 5.29405 5.33149 5.36655 5.44427 5.51649 5.62320 5.67976 5.99936 6.06915 6.35015 6.36901 6.72416 6.90742 7.08537 7.40957 8.91438 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.004721 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.160619 B = 5929.233889 C = 7533.303037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.356 3.644 6 O -0.471 6.471 7 C 0.071 3.929 8 N -0.602 5.602 9 C 0.082 3.918 10 C 0.109 3.891 11 C -0.140 4.140 12 C 0.516 3.484 13 O -0.587 6.587 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.111 4.111 17 C 0.062 3.938 18 N -0.526 5.526 19 C 0.209 3.791 20 C -0.528 4.528 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.261 1.261 26 H -0.286 1.286 27 H -0.278 1.278 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.021 0.979 51 H -0.014 1.014 52 H -0.013 1.013 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 10.039 4.373 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.198 4.198 5 C 0.231 3.769 6 O -0.345 6.345 7 C -0.052 4.052 8 N -0.333 5.333 9 C -0.042 4.042 10 C 0.017 3.983 11 C -0.180 4.180 12 C 0.306 3.694 13 O -0.468 6.468 14 C -0.131 4.131 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.066 4.066 18 N -0.250 5.250 19 C 0.083 3.917 20 C -0.566 4.566 21 H 0.085 0.915 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.787 3.213 25 H -0.185 1.185 26 H -0.212 1.212 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.039 0.961 51 H 0.004 0.996 52 H 0.004 0.996 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.862 9.068 4.393 17.138 hybrid contribution 1.110 0.178 -1.391 1.789 sum -12.752 9.246 3.002 16.035 Atomic orbital electron populations 1.21690 0.91848 1.01857 1.03089 1.21214 0.98277 0.98102 0.93399 1.21877 1.01808 0.91613 1.04092 1.21882 1.01592 0.99858 0.96441 1.25552 0.90514 0.74664 0.86216 1.90326 1.59033 1.39131 1.46002 1.21914 0.96057 0.99795 0.87413 1.47976 1.70453 1.06734 1.08147 1.22951 1.01706 0.97705 0.81799 1.21503 0.88822 0.91576 0.96383 1.22432 1.04437 0.99785 0.91329 1.21414 0.73519 0.82397 0.92026 1.90611 1.53965 1.56621 1.45622 1.21462 1.00321 0.99830 0.91439 1.21603 0.95184 0.96532 1.01776 1.21610 0.96295 1.02393 0.94550 1.22059 1.00632 0.88641 0.95225 1.61822 1.06184 1.33952 1.23034 1.19365 0.93925 0.93663 0.84739 1.21599 0.93641 1.48274 0.93076 0.91489 1.25838 1.03260 0.95124 0.95028 1.70132 1.37477 1.50910 0.98317 0.85444 0.79723 0.77524 0.78589 1.18461 1.21214 1.20352 0.92545 0.89274 0.93917 0.91602 0.88920 0.91843 0.93748 0.88510 0.92128 0.85435 0.88662 0.89064 0.90737 0.89173 0.85208 0.89344 0.90179 0.91826 0.89128 0.90125 0.91654 0.91714 0.96120 0.99634 0.99574 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 7.76 71.98 0.56 -1.95 16 2 C -0.11 -2.33 0.87 -52.93 -0.05 -2.38 16 3 C -0.14 -2.19 8.25 71.98 0.59 -1.60 16 4 C -0.14 -2.93 8.25 71.98 0.59 -2.33 16 5 C 0.36 10.65 6.04 29.10 0.18 10.82 16 6 O -0.47 -16.69 16.05 -1.45 -0.02 -16.71 16 7 C 0.07 2.41 5.69 85.63 0.49 2.90 16 8 N -0.60 -23.09 1.39 -822.93 -1.14 -24.23 16 9 C 0.08 2.64 4.77 86.57 0.41 3.05 16 10 C 0.11 3.56 0.71 4.06 0.00 3.56 16 11 C -0.14 -5.16 5.45 30.41 0.17 -5.00 16 12 C 0.52 23.00 6.39 87.93 0.56 23.56 16 13 O -0.59 -31.01 17.60 -3.03 -0.05 -31.07 16 14 C -0.09 -2.15 4.65 30.42 0.14 -2.01 16 15 C -0.11 -2.27 5.82 30.72 0.18 -2.09 16 16 C -0.11 -2.73 6.07 30.65 0.19 -2.54 16 17 C 0.06 2.15 4.92 86.30 0.42 2.58 16 18 N -0.53 -21.03 4.55 -851.08 -3.88 -24.90 16 19 C 0.21 10.78 3.47 85.56 0.30 11.08 16 20 C -0.53 -29.16 8.29 25.60 0.21 -28.94 16 21 H 0.07 3.60 6.34 -2.91 -0.02 3.58 16 22 C 0.01 0.34 5.46 84.65 0.46 0.80 16 23 N -0.93 -56.01 13.29 21.44 0.28 -55.72 16 24 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 H 0.06 1.14 8.10 -2.38 -0.02 1.12 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.06 1.08 7.29 -2.39 -0.02 1.06 16 32 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.35 7.28 -2.39 -0.02 1.33 16 37 H 0.13 3.69 7.38 -2.39 -0.02 3.67 16 38 H 0.10 3.66 7.17 -2.39 -0.02 3.64 16 39 H 0.09 2.50 7.78 -2.38 -0.02 2.48 16 40 H 0.07 2.47 5.79 -2.39 -0.01 2.45 16 41 H 0.09 3.74 7.30 -2.39 -0.02 3.72 16 42 H 0.13 3.88 7.86 -2.39 -0.02 3.86 16 43 H 0.09 1.70 8.04 -2.39 -0.02 1.68 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.06 1.22 7.60 -2.39 -0.02 1.20 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.06 2.58 5.93 -2.39 -0.01 2.57 16 50 H 0.02 0.72 6.22 -2.39 -0.01 0.71 16 51 H -0.01 -0.86 6.14 -2.39 -0.01 -0.87 16 52 H -0.01 -0.74 6.11 -2.39 -0.01 -0.75 16 53 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -76.49 398.62 3.51 -72.98 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.88 Total: 24.11 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.41 Total: 9.52 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.73 Total: -104.86 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.08 Total: -47.78 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -76.49 3.51 -72.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.203 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds