Wall clock time and date at job start Tue Mar 31 2020 19:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47176 * 2 1 4 4 C 1.52998 * 109.47109 * 240.00143 * 2 1 3 5 5 C 1.50700 * 109.47425 * 120.00244 * 2 1 3 6 6 O 1.20752 * 120.00032 * 359.97438 * 5 2 1 7 7 C 1.50699 * 120.00049 * 179.97438 * 5 2 1 8 8 N 1.46496 * 109.47313 * 179.97438 * 7 5 2 9 9 C 1.46853 * 124.36799 * 90.02151 * 8 7 5 10 10 C 1.54653 * 105.50267 * 163.13158 * 9 8 7 11 11 C 1.53864 * 101.58358 * 24.76152 * 10 9 8 12 12 C 1.53244 * 110.59910 * 215.79937 * 11 10 9 13 13 C 1.54804 * 104.90460 * 237.80016 * 12 11 10 14 14 C 1.55184 * 102.85586 * 338.21455 * 13 12 11 15 15 N 1.47074 * 110.70278 * 96.20882 * 11 10 9 16 16 C 1.46897 * 110.99983 * 266.25652 * 15 11 10 17 17 C 1.53007 * 109.47137 * 189.99911 * 16 15 11 18 18 C 1.50698 * 109.47081 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00294 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99965 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99711 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47394 * 90.00041 * 22 20 18 24 24 H 1.48506 * 109.46775 * 209.99646 * 22 20 18 25 25 H 1.48501 * 109.46978 * 329.99346 * 22 20 18 26 26 C 1.34671 * 124.37195 * 270.02958 * 8 7 5 27 27 O 1.21289 * 125.07655 * 0.84594 * 26 8 7 28 28 H 1.09001 * 109.46570 * 299.99887 * 1 2 3 29 29 H 1.08993 * 109.47247 * 59.99632 * 1 2 3 30 30 H 1.08999 * 109.46608 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47310 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47064 * 300.00100 * 3 2 1 33 33 H 1.08993 * 109.46789 * 60.00119 * 3 2 1 34 34 H 1.08998 * 109.47393 * 300.00198 * 4 2 1 35 35 H 1.09001 * 109.47192 * 59.99862 * 4 2 1 36 36 H 1.08997 * 109.47400 * 179.97438 * 4 2 1 37 37 H 1.09008 * 109.47267 * 59.99733 * 7 5 2 38 38 H 1.08999 * 109.47169 * 300.00364 * 7 5 2 39 39 H 1.09000 * 110.23556 * 44.12869 * 9 8 7 40 40 H 1.09002 * 110.24109 * 282.14230 * 9 8 7 41 41 H 1.09002 * 111.00422 * 266.68634 * 10 9 8 42 42 H 1.08995 * 111.03358 * 142.84840 * 10 9 8 43 43 H 1.09002 * 110.37245 * 356.68963 * 12 11 10 44 44 H 1.08999 * 110.37152 * 118.91480 * 12 11 10 45 45 H 1.09001 * 110.71477 * 96.51042 * 13 12 11 46 46 H 1.08995 * 110.71879 * 219.78267 * 13 12 11 47 47 H 1.09006 * 110.56005 * 278.38233 * 14 13 12 48 48 H 1.09000 * 110.67095 * 155.35501 * 14 13 12 49 49 H 1.08998 * 109.47494 * 309.99800 * 16 15 11 50 50 H 1.08998 * 109.47344 * 70.00324 * 16 15 11 51 51 H 1.08998 * 109.46837 * 300.00291 * 17 16 15 52 52 H 1.08998 * 109.46666 * 59.99998 * 17 16 15 53 53 H 0.97003 * 119.99665 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 8 1.2478 -1.1690 2.0255 7 6 3.5141 -0.8486 1.4685 8 7 3.7419 -1.5716 2.7221 9 6 3.8706 -3.0308 2.8259 10 6 4.5172 -3.2915 4.2064 11 6 4.1073 -2.0282 4.9831 12 6 5.2244 -1.5970 5.9395 13 6 4.5685 -1.5926 7.3417 14 6 3.0570 -1.4622 7.0154 15 7 2.8984 -2.2786 5.7824 16 6 1.6894 -1.8886 5.0446 17 6 0.4834 -1.9263 5.9854 18 6 -0.7567 -1.5256 5.2287 19 1 -0.6913 -1.2701 4.1815 20 6 -1.9750 -1.4863 5.8732 21 7 -3.0571 -1.1362 5.2130 22 14 -2.0881 -1.9291 7.6845 23 1 -1.8943 -0.7072 8.5058 24 1 -3.4248 -2.5102 7.9694 25 1 -1.0354 -2.9220 8.0180 26 6 3.8601 -0.9839 3.9281 27 8 3.7794 0.2088 4.1331 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.9656 0.1414 1.5333 38 1 3.9648 -1.4001 0.6435 39 1 4.5128 -3.4101 2.0311 40 1 2.8884 -3.5006 2.7748 41 1 5.6016 -3.3639 4.1225 42 1 4.1027 -4.1867 4.6698 43 1 6.0476 -2.3109 5.9078 44 1 5.5790 -0.5987 5.6833 45 1 4.7706 -2.5272 7.8649 46 1 4.9137 -0.7398 7.9261 47 1 2.7951 -0.4216 6.8235 48 1 2.4520 -1.8686 7.8259 49 1 1.8128 -0.8791 4.6525 50 1 1.5280 -2.5818 4.2191 51 1 0.3600 -2.9358 6.3776 52 1 0.6448 -1.2331 6.8109 53 1 -3.9141 -1.1082 5.6665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038376.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:02 Heat of formation + Delta-G solvation = -90.273968 kcal Electronic energy + Delta-G solvation = -32279.651369 eV Core-core repulsion = 28343.230589 eV Total energy + Delta-G solvation = -3936.420780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58206 -40.94279 -38.74735 -37.41789 -36.76698 -35.74732 -33.99248 -33.13367 -30.80507 -29.51161 -28.83516 -28.25824 -27.82866 -26.39882 -24.82219 -24.00729 -23.14614 -22.08474 -21.35558 -19.95869 -19.45645 -19.05960 -17.99106 -17.62820 -17.16632 -16.74870 -16.43294 -16.26817 -16.26220 -15.92963 -15.62966 -15.09328 -14.96386 -14.80329 -14.68279 -14.60109 -14.48428 -13.98989 -13.74983 -13.51106 -13.34488 -13.26291 -13.19312 -13.10347 -13.08571 -12.96029 -12.79863 -12.61981 -12.44745 -12.24081 -12.05717 -11.96379 -11.88563 -11.86906 -11.78349 -11.64736 -11.55000 -11.42804 -11.09390 -10.82814 -10.80410 -9.63339 -9.47199 -8.34821 -6.39569 1.00390 1.26704 1.30081 1.36030 1.43260 1.89188 2.30017 2.87144 2.96970 2.98457 3.32919 3.43971 3.64289 3.66937 3.83729 3.90426 3.95587 4.09026 4.13412 4.20659 4.25860 4.29061 4.34489 4.38780 4.46539 4.57018 4.58979 4.63960 4.66214 4.74346 4.76741 4.81178 4.88257 4.88884 4.91240 4.92948 4.97775 5.03396 5.10987 5.12988 5.15354 5.21745 5.24267 5.26236 5.33626 5.35994 5.48850 5.53506 5.84665 5.93631 5.98083 6.25700 6.58779 6.69990 7.04205 7.23301 8.82935 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.005737 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.643491 B = 4879.276222 C = 7438.718916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.135 4.135 4 C -0.129 4.129 5 C 0.323 3.677 6 O -0.472 6.472 7 C 0.074 3.926 8 N -0.608 5.608 9 C 0.095 3.905 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.105 4.105 13 C -0.108 4.108 14 C 0.023 3.977 15 N -0.483 5.483 16 C 0.088 3.912 17 C 0.003 3.997 18 C -0.528 4.528 19 H 0.020 0.980 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.955 3.045 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.244 1.244 26 C 0.504 3.496 27 O -0.578 6.578 28 H 0.016 0.984 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.164 0.836 39 H 0.127 0.873 40 H 0.047 0.953 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.014 0.986 48 H 0.083 0.917 49 H 0.002 0.998 50 H 0.058 0.942 51 H 0.027 0.973 52 H 0.010 0.990 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.775 -4.012 -10.208 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 C -0.192 4.192 4 C -0.186 4.186 5 C 0.197 3.803 6 O -0.345 6.345 7 C -0.048 4.048 8 N -0.340 5.340 9 C -0.027 4.027 10 C -0.141 4.141 11 C -0.045 4.045 12 C -0.143 4.143 13 C -0.145 4.145 14 C -0.105 4.105 15 N -0.207 5.207 16 C -0.040 4.040 17 C -0.035 4.035 18 C -0.567 4.567 19 H 0.038 0.962 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.167 1.167 26 C 0.291 3.709 27 O -0.457 6.457 28 H 0.036 0.964 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.181 0.819 39 H 0.145 0.855 40 H 0.066 0.934 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.102 0.898 47 H 0.033 0.967 48 H 0.101 0.899 49 H 0.020 0.980 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.028 0.972 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.061 -4.157 -9.633 25.335 hybrid contribution -1.722 1.454 0.291 2.272 sum 21.339 -2.703 -9.342 23.451 Atomic orbital electron populations 1.21690 0.94726 1.01313 1.01249 1.21236 0.96190 0.98156 0.95605 1.21845 1.02615 0.92323 1.02412 1.21831 1.02881 0.99694 0.94193 1.26037 0.92650 0.75541 0.86110 1.90620 1.59984 1.38997 1.44869 1.22124 0.94102 1.00772 0.87823 1.48241 1.70068 1.09198 1.06506 1.22479 1.01373 0.77989 1.00813 1.22742 1.02977 0.96385 0.91950 1.22440 0.93659 0.95179 0.93229 1.22360 0.96366 1.02434 0.93115 1.22559 0.91222 1.03960 0.96808 1.23441 0.99389 0.94614 0.93065 1.65100 1.00292 1.50707 1.04640 1.21859 0.89644 0.96508 0.96004 1.19437 0.92635 0.96420 0.95010 1.21305 0.92984 1.45647 0.96756 0.96156 1.26054 0.94809 0.94367 1.03979 1.70095 0.99803 1.50177 1.39083 0.85596 0.78405 0.79739 0.78552 1.19305 1.20041 1.16692 1.21721 0.74321 0.88982 0.85839 1.90652 1.53139 1.17914 1.83971 0.96436 0.89318 0.94043 0.89411 0.89033 0.95522 0.92776 0.89568 0.88871 0.86636 0.81912 0.85500 0.93411 0.85488 0.87582 0.86101 0.92139 0.88076 0.89761 0.96713 0.89870 0.97966 0.92342 0.95442 0.97157 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.77 71.98 0.56 -3.60 16 2 C -0.11 -2.69 0.87 -52.93 -0.05 -2.73 16 3 C -0.13 -2.78 8.26 71.98 0.59 -2.19 16 4 C -0.13 -1.84 8.25 71.98 0.59 -1.25 16 5 C 0.32 10.27 6.04 29.10 0.18 10.44 16 6 O -0.47 -21.79 15.23 -1.43 -0.02 -21.81 16 7 C 0.07 1.72 5.69 85.63 0.49 2.21 16 8 N -0.61 -17.30 2.42 -822.43 -1.99 -19.29 16 9 C 0.09 2.05 6.85 86.88 0.59 2.65 16 10 C -0.10 -2.01 6.33 31.45 0.20 -1.81 16 11 C 0.05 1.42 0.79 3.06 0.00 1.43 16 12 C -0.10 -2.41 6.18 31.29 0.19 -2.22 16 13 C -0.11 -2.58 7.09 31.96 0.23 -2.36 16 14 C 0.02 0.81 5.11 86.70 0.44 1.25 16 15 N -0.48 -18.10 5.03 -839.36 -4.22 -22.32 16 16 C 0.09 4.30 3.78 86.31 0.33 4.63 16 17 C 0.00 0.14 3.72 29.85 0.11 0.26 16 18 C -0.53 -35.15 9.66 25.60 0.25 -34.90 16 19 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 20 C 0.00 0.27 5.47 84.66 0.46 0.74 16 21 N -0.95 -65.07 13.96 21.45 0.30 -64.77 16 22 Si 0.96 48.54 27.47 68.60 1.88 50.42 16 23 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.24 -11.50 6.54 99.48 0.65 -10.85 16 26 C 0.50 18.02 4.46 87.61 0.39 18.42 16 27 O -0.58 -25.86 16.58 -3.06 -0.05 -25.91 16 28 H 0.02 0.67 8.10 -2.39 -0.02 0.66 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.09 1.32 7.29 -2.39 -0.02 1.30 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.75 7.28 -2.39 -0.02 0.73 16 37 H 0.12 2.61 7.18 -2.38 -0.02 2.59 16 38 H 0.16 1.91 7.38 -2.39 -0.02 1.89 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.33 7.46 -2.39 -0.02 1.31 16 41 H 0.13 1.40 7.57 -2.39 -0.02 1.39 16 42 H 0.11 2.08 8.07 -2.39 -0.02 2.06 16 43 H 0.12 1.74 7.40 -2.39 -0.02 1.73 16 44 H 0.06 1.57 7.44 -2.39 -0.02 1.56 16 45 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.01 0.62 7.98 -2.38 -0.02 0.60 16 48 H 0.08 2.94 7.72 -2.39 -0.02 2.92 16 49 H 0.00 0.12 5.84 -2.39 -0.01 0.11 16 50 H 0.06 3.01 6.71 -2.39 -0.02 2.99 16 51 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 52 H 0.01 0.56 6.23 -2.39 -0.01 0.54 16 53 H 0.27 16.82 8.31 -92.71 -0.77 16.05 16 Total: -1.00 -96.93 404.10 2.28 -94.65 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.82 Total: 18.06 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.56 Total: -9.04 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -5.91 Total: -106.38 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -0.07 Total: -47.72 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.88 Total: 50.42 kcal Total: -96.93 2.28 -94.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038376.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.379 kcal (2) G-P(sol) polarization free energy of solvation -96.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds