Wall clock time and date at job start Tue Mar 31 2020 19:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 C 1.53007 * 109.47257 * 240.00173 * 2 1 3 5 5 C 1.50697 * 109.46970 * 120.00234 * 2 1 3 6 6 O 1.20763 * 120.00192 * 0.02562 * 5 2 1 7 7 C 1.50703 * 119.99963 * 179.97438 * 5 2 1 8 8 N 1.46504 * 109.47103 * 180.02562 * 7 5 2 9 9 C 1.46873 * 124.36800 * 270.20221 * 8 7 5 10 10 C 1.54700 * 105.57912 * 163.40289 * 9 8 7 11 11 C 1.53614 * 101.51491 * 24.31650 * 10 9 8 12 12 C 1.53609 * 110.86690 * 215.40288 * 11 10 9 13 13 C 1.55163 * 102.65956 * 217.70803 * 12 11 10 14 14 N 1.48626 * 103.36117 * 36.58210 * 13 12 11 15 15 C 1.46900 * 111.00020 * 200.85125 * 14 13 12 16 16 C 1.53004 * 109.47087 * 287.44899 * 15 14 13 17 17 C 1.50702 * 109.47013 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00268 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00658 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99802 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46983 * 90.00346 * 21 19 17 23 23 H 1.48498 * 109.47365 * 209.99928 * 21 19 17 24 24 H 1.48498 * 109.47263 * 330.00731 * 21 19 17 25 25 C 1.48182 * 105.86256 * 321.39433 * 14 13 12 26 26 C 1.34749 * 124.37120 * 90.02418 * 8 7 5 27 27 O 1.21283 * 125.13580 * 1.03817 * 26 8 7 28 28 H 1.08990 * 109.47110 * 300.00260 * 1 2 3 29 29 H 1.09008 * 109.46827 * 60.00020 * 1 2 3 30 30 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47502 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47264 * 300.00113 * 3 2 1 33 33 H 1.09004 * 109.46633 * 59.99858 * 3 2 1 34 34 H 1.09004 * 109.46801 * 300.00027 * 4 2 1 35 35 H 1.08996 * 109.47032 * 60.00166 * 4 2 1 36 36 H 1.08996 * 109.47051 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47081 * 60.00138 * 7 5 2 38 38 H 1.09004 * 109.47535 * 299.99807 * 7 5 2 39 39 H 1.08999 * 110.38258 * 44.27711 * 9 8 7 40 40 H 1.09001 * 110.02840 * 282.34350 * 9 8 7 41 41 H 1.09007 * 111.01557 * 266.26247 * 10 9 8 42 42 H 1.08997 * 111.01900 * 142.37550 * 10 9 8 43 43 H 1.08997 * 110.77013 * 335.99662 * 12 11 10 44 44 H 1.08996 * 110.77144 * 99.41009 * 12 11 10 45 45 H 1.09001 * 110.64088 * 278.11547 * 13 12 11 46 46 H 1.09003 * 110.78525 * 155.11789 * 13 12 11 47 47 H 1.08997 * 109.46948 * 47.45256 * 15 14 13 48 48 H 1.09002 * 109.46961 * 167.45346 * 15 14 13 49 49 H 1.08997 * 109.47518 * 300.00008 * 16 15 14 50 50 H 1.09002 * 109.46855 * 60.00382 * 16 15 14 51 51 H 0.96999 * 120.00677 * 179.97438 * 20 19 17 52 52 H 1.09006 * 110.01742 * 265.80028 * 25 14 13 53 53 H 1.08996 * 110.01755 * 144.40907 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2475 -1.1698 2.0251 7 6 3.5139 -0.8487 1.4686 8 7 3.7416 -1.5728 2.7217 9 6 3.8667 -0.9332 4.0379 10 6 3.6673 -2.0669 5.0714 11 6 4.0671 -3.3030 4.2515 12 6 3.2055 -4.5157 4.6345 13 6 4.2207 -5.6874 4.5722 14 7 5.4780 -5.0800 5.0816 15 6 6.6493 -5.8544 4.6501 16 6 6.7070 -7.1693 5.4305 17 6 7.9090 -7.9634 4.9883 18 1 8.5658 -7.5699 4.2265 19 6 8.1697 -9.1928 5.5553 20 7 9.2184 -9.8862 5.1691 21 14 7.0333 -9.8737 6.8723 22 1 5.9583 -10.6742 6.2329 23 1 7.8097 -10.7374 7.7978 24 1 6.4285 -8.7509 7.6330 25 6 5.5168 -3.7057 4.5287 26 6 3.8600 -2.9117 2.8159 27 8 3.8118 -3.6841 1.8820 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 3.9654 0.1413 1.5334 38 1 3.9648 -1.4003 0.6436 39 1 3.0992 -0.1694 4.1633 40 1 4.8582 -0.4938 4.1468 41 1 2.6262 -2.1282 5.3885 42 1 4.3282 -1.9356 5.9281 43 1 2.8063 -4.4033 5.6425 44 1 2.4015 -4.6619 3.9132 45 1 4.3484 -6.0310 3.5457 46 1 3.9032 -6.5089 5.2144 47 1 6.5712 -6.0677 3.5841 48 1 7.5554 -5.2791 4.8402 49 1 6.7851 -6.9560 6.4965 50 1 5.8010 -7.7446 5.2404 51 1 9.4020 -10.7509 5.5683 52 1 6.0915 -3.6923 3.6025 53 1 5.9613 -3.0242 5.2539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038726.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:11 Heat of formation + Delta-G solvation = -94.938250 kcal Electronic energy + Delta-G solvation = -30291.102926 eV Core-core repulsion = 26354.479887 eV Total energy + Delta-G solvation = -3936.623039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.38158 -40.96885 -39.11823 -37.53627 -36.76742 -35.71376 -34.34564 -32.43519 -30.75640 -29.55386 -28.92977 -28.25318 -27.82563 -26.61122 -24.54985 -23.94422 -23.20895 -22.09151 -21.55948 -20.08482 -19.51658 -19.01959 -17.96721 -17.61068 -17.16332 -16.75304 -16.41460 -16.28742 -16.00040 -15.71804 -15.60217 -15.32117 -15.08377 -14.82270 -14.72113 -14.62918 -14.46901 -14.12127 -13.81982 -13.54474 -13.45452 -13.29596 -13.21349 -13.13702 -13.04813 -12.97209 -12.79105 -12.62610 -12.57657 -12.48018 -12.07839 -11.93811 -11.87399 -11.82219 -11.80601 -11.66943 -11.49051 -11.42287 -10.94572 -10.77745 -10.76911 -9.66225 -9.46753 -8.31243 -6.35945 0.87324 1.34038 1.35828 1.37425 1.51366 1.81898 2.35945 2.90563 2.95410 3.04016 3.26132 3.35815 3.48215 3.67122 3.82205 3.85448 3.93023 3.97029 4.13088 4.24189 4.25764 4.29570 4.36162 4.40458 4.44897 4.48411 4.60575 4.63926 4.66543 4.70338 4.77056 4.79517 4.83737 4.90120 4.91335 4.93075 4.94183 4.98388 4.99422 5.10711 5.15463 5.18221 5.23998 5.25028 5.33795 5.40483 5.46298 5.59797 5.87607 5.92303 6.02400 6.26045 6.42836 6.70843 7.01211 7.28680 8.85479 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.002266 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.682376 B =12353.271181 C =12598.532924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.347 3.653 6 O -0.479 6.479 7 C 0.066 3.934 8 N -0.610 5.610 9 C 0.101 3.899 10 C -0.108 4.108 11 C -0.104 4.104 12 C -0.089 4.089 13 C 0.033 3.967 14 N -0.513 5.513 15 C 0.075 3.925 16 C 0.005 3.995 17 C -0.535 4.535 18 H 0.030 0.970 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.953 3.047 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.244 1.244 25 C 0.063 3.937 26 C 0.523 3.477 27 O -0.574 6.574 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.084 0.916 47 H 0.008 0.992 48 H 0.068 0.932 49 H 0.029 0.971 50 H 0.012 0.988 51 H 0.267 0.733 52 H 0.025 0.975 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 31.342 -6.512 36.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.193 4.193 4 C -0.198 4.198 5 C 0.222 3.778 6 O -0.353 6.353 7 C -0.056 4.056 8 N -0.342 5.342 9 C -0.020 4.020 10 C -0.146 4.146 11 C -0.108 4.108 12 C -0.128 4.128 13 C -0.095 4.095 14 N -0.237 5.237 15 C -0.054 4.054 16 C -0.033 4.033 17 C -0.574 4.574 18 H 0.048 0.952 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.167 1.167 25 C -0.066 4.066 26 C 0.312 3.688 27 O -0.453 6.453 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.176 0.824 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.102 0.898 47 H 0.026 0.974 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.030 0.970 51 H 0.076 0.924 52 H 0.044 0.956 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.145 30.623 -6.042 36.104 hybrid contribution 0.013 -1.353 -1.069 1.725 sum -18.132 29.270 -7.111 35.157 Atomic orbital electron populations 1.21716 0.93154 1.01405 1.02769 1.21234 0.97481 0.98631 0.93930 1.21875 1.02580 0.91039 1.03777 1.21892 1.02283 0.99432 0.96220 1.25712 0.91698 0.74551 0.85853 1.90390 1.59673 1.39119 1.46085 1.22148 0.95172 1.01130 0.87132 1.48232 1.70484 1.06258 1.09195 1.22488 1.04155 0.96070 0.79331 1.22718 1.04388 0.89722 0.97754 1.21528 0.97371 0.98972 0.92906 1.22307 0.96046 0.91404 1.03022 1.23300 0.90448 0.98244 0.97550 1.64994 1.01909 1.02016 1.54792 1.22000 0.92620 0.95096 0.95642 1.19359 0.94715 0.92637 0.96605 1.21404 1.10392 1.03506 1.22050 0.95213 1.26003 0.96874 0.96955 0.99325 1.70063 1.29650 1.14214 1.45118 0.85613 0.78735 0.78980 0.79069 1.19503 1.20548 1.16740 1.22776 0.93367 0.91730 0.98687 1.20884 0.74231 0.82690 0.91040 1.90685 1.52812 1.56498 1.45309 0.92771 0.89854 0.94528 0.89921 0.89806 0.92006 0.94403 0.89278 0.90586 0.82404 0.87189 0.88634 0.87923 0.89044 0.85917 0.87243 0.92070 0.96102 0.89794 0.97412 0.91387 0.95236 0.97016 0.92385 0.95636 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.76 71.98 0.56 -1.22 16 2 C -0.11 -1.26 0.87 -52.93 -0.05 -1.30 16 3 C -0.14 -0.63 8.26 71.98 0.59 -0.03 16 4 C -0.14 -1.48 8.26 71.98 0.59 -0.88 16 5 C 0.35 6.03 6.04 29.10 0.18 6.20 16 6 O -0.48 -12.35 16.05 -1.46 -0.02 -12.37 16 7 C 0.07 0.96 5.70 85.63 0.49 1.45 16 8 N -0.61 -11.98 2.43 -822.50 -2.00 -13.98 16 9 C 0.10 1.20 7.36 86.89 0.64 1.84 16 10 C -0.11 -1.57 6.11 31.38 0.19 -1.38 16 11 C -0.10 -2.55 0.77 -52.66 -0.04 -2.59 16 12 C -0.09 -2.44 6.02 31.54 0.19 -2.25 16 13 C 0.03 1.14 5.92 86.71 0.51 1.65 16 14 N -0.51 -18.23 5.26 -883.52 -4.64 -22.87 16 15 C 0.07 3.26 4.65 86.30 0.40 3.66 16 16 C 0.00 0.23 4.13 29.85 0.12 0.36 16 17 C -0.54 -32.51 9.66 25.60 0.25 -32.26 16 18 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 19 C 0.01 0.32 5.47 84.65 0.46 0.79 16 20 N -0.95 -61.43 13.96 21.44 0.30 -61.13 16 21 Si 0.95 46.14 27.47 68.60 1.88 48.02 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.24 -11.02 6.54 99.48 0.65 -10.37 16 25 C 0.06 1.76 6.02 86.06 0.52 2.27 16 26 C 0.52 15.11 6.49 87.52 0.57 15.68 16 27 O -0.57 -22.19 17.44 -3.04 -0.05 -22.24 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.64 16 31 H 0.08 0.10 7.28 -2.39 -0.02 0.08 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.62 7.28 -2.39 -0.02 0.61 16 37 H 0.16 0.78 7.38 -2.39 -0.02 0.77 16 38 H 0.11 1.78 7.16 -2.39 -0.02 1.76 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 1.27 7.87 -2.38 -0.02 1.25 16 42 H 0.12 1.24 7.43 -2.39 -0.02 1.22 16 43 H 0.11 2.41 7.83 -2.39 -0.02 2.39 16 44 H 0.06 1.82 7.81 -2.39 -0.02 1.80 16 45 H 0.02 0.84 7.80 -2.39 -0.02 0.82 16 46 H 0.08 2.89 7.82 -2.39 -0.02 2.87 16 47 H 0.01 0.36 7.83 -2.39 -0.02 0.34 16 48 H 0.07 2.91 8.08 -2.39 -0.02 2.89 16 49 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 50 H 0.01 0.58 6.81 -2.39 -0.02 0.56 16 51 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 52 H 0.03 0.82 7.38 -2.38 -0.02 0.80 16 53 H 0.12 2.55 7.31 -2.39 -0.02 2.53 16 Total: -1.00 -85.15 412.62 2.45 -82.70 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.81 Total: 9.91 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 6.18 Total: -8.03 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -6.35 Total: -97.98 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.08 Total: -34.62 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.02 kcal Total: -85.15 2.45 -82.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038726.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.243 kcal (2) G-P(sol) polarization free energy of solvation -85.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds