Wall clock time and date at job start Tue Mar 31 2020 19:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00269 * 2 1 4 4 C 1.52999 * 109.46953 * 125.00258 * 3 2 1 5 5 C 1.53006 * 109.47054 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47002 * 304.99688 * 5 4 3 7 7 O 1.42895 * 109.47000 * 64.99718 * 5 4 3 8 8 C 1.52997 * 109.47127 * 185.00114 * 5 4 3 9 9 N 1.46896 * 109.47114 * 179.97438 * 8 5 4 10 10 C 1.47558 * 110.99880 * 69.87258 * 9 8 5 11 11 C 1.54582 * 107.29045 * 123.20190 * 10 9 8 12 12 C 1.53696 * 102.86415 * 20.97281 * 11 10 9 13 13 C 1.53220 * 111.53391 * 205.84537 * 12 11 10 14 14 C 1.54795 * 101.38877 * 261.15869 * 13 12 11 15 15 N 1.46924 * 105.54768 * 335.82186 * 14 13 12 16 16 C 1.46493 * 124.38517 * 196.74592 * 15 14 13 17 17 C 1.53003 * 109.47361 * 270.03305 * 16 15 14 18 18 C 1.50693 * 109.47304 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47128 * 59.99653 * 22 20 18 24 24 H 1.48500 * 109.47397 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46996 * 299.99663 * 22 20 18 26 26 C 1.34892 * 111.23850 * 16.75232 * 15 14 13 27 27 O 1.21286 * 125.21652 * 178.79880 * 26 15 14 28 28 C 1.48125 * 111.00158 * 190.81370 * 9 8 5 29 29 H 1.08001 * 120.00066 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00018 * 359.97438 * 1 2 3 31 31 H 1.08010 * 119.99559 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47093 * 5.00507 * 3 2 1 33 33 H 1.08995 * 109.47083 * 245.00067 * 3 2 1 34 34 H 1.08997 * 109.47394 * 59.99888 * 4 3 2 35 35 H 1.09004 * 109.47644 * 299.99960 * 4 3 2 36 36 H 0.96696 * 113.99976 * 60.00990 * 7 5 4 37 37 H 1.09001 * 109.47289 * 299.99953 * 8 5 4 38 38 H 1.09004 * 109.47261 * 59.99697 * 8 5 4 39 39 H 1.09000 * 109.88001 * 242.61968 * 10 9 8 40 40 H 1.09001 * 109.87892 * 3.78157 * 10 9 8 41 41 H 1.08993 * 110.73846 * 139.31939 * 11 10 9 42 42 H 1.09000 * 110.73525 * 262.63305 * 11 10 9 43 43 H 1.09003 * 111.03693 * 19.18769 * 13 12 11 44 44 H 1.08998 * 111.03671 * 143.12746 * 13 12 11 45 45 H 1.09009 * 110.22793 * 216.80603 * 14 13 12 46 46 H 1.08998 * 110.30660 * 94.88714 * 14 13 12 47 47 H 1.09003 * 109.46731 * 30.02499 * 16 15 14 48 48 H 1.08994 * 109.47333 * 150.02686 * 16 15 14 49 49 H 1.09003 * 109.46540 * 299.99311 * 17 16 15 50 50 H 1.08994 * 109.47403 * 59.99424 * 17 16 15 51 51 H 0.96993 * 120.00322 * 180.02562 * 21 20 18 52 52 H 1.09001 * 110.39951 * 333.88763 * 28 9 8 53 53 H 1.09004 * 110.39815 * 96.29138 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6582 1.1820 6 1 4.2857 2.7975 0.2163 7 8 2.8885 3.7337 1.4162 8 6 4.8578 2.6362 2.2869 9 7 5.5923 3.9083 2.2869 10 6 4.7347 5.0141 2.7552 11 6 5.4446 5.6656 3.9640 12 6 6.9072 5.2325 3.7762 13 6 7.6602 5.2012 5.1103 14 6 8.4033 6.5586 5.0738 15 7 8.5212 6.9049 3.6508 16 6 9.4436 7.9104 3.1177 17 6 8.7532 9.2756 3.0962 18 6 9.7019 10.3097 2.5472 19 1 10.6979 10.0221 2.2443 20 6 9.2988 11.6232 2.4325 21 7 8.0861 11.9736 2.8017 22 14 10.4751 12.9053 1.7526 23 1 10.8722 12.5299 0.3718 24 1 9.8049 14.2303 1.7315 25 1 11.6831 12.9747 2.6135 26 6 7.6699 6.1775 2.8987 27 8 7.5422 6.2731 1.6964 28 6 6.7860 3.8321 3.1606 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4025 -0.9313 34 1 3.7399 0.5064 1.0920 35 1 2.4774 1.2354 2.1131 36 1 2.4192 3.6750 2.2596 37 1 4.3718 2.4968 3.2526 38 1 5.5528 1.8157 2.1082 39 1 4.6090 5.7482 1.9595 40 1 3.7633 4.6257 3.0611 41 1 5.3555 6.7512 3.9247 42 1 5.0447 5.2783 4.9011 43 1 6.9667 5.1570 5.9501 44 1 8.3646 4.3700 5.1425 45 1 9.3926 6.4588 5.5207 46 1 7.8274 7.3194 5.6006 47 1 10.3301 7.9616 3.7500 48 1 9.7355 7.6347 2.1044 49 1 7.8667 9.2244 2.4639 50 1 8.4613 9.5512 4.1095 51 1 7.8024 12.8975 2.7206 52 1 6.6386 3.0855 3.9409 53 1 7.6731 3.5978 2.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274621885.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:09 Heat of formation + Delta-G solvation = -66.997425 kcal Electronic energy + Delta-G solvation = -29733.861699 eV Core-core repulsion = 25798.450266 eV Total energy + Delta-G solvation = -3935.411433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.93217 -38.94930 -37.14660 -35.88327 -35.38366 -33.88869 -32.62611 -31.69346 -30.37308 -29.15004 -28.22632 -27.20688 -25.09618 -23.99167 -23.09622 -21.90910 -21.70332 -21.03073 -20.27069 -20.01096 -18.51957 -16.68264 -16.65401 -16.39920 -15.93596 -15.68218 -15.49247 -15.41806 -15.10500 -14.63381 -14.47850 -14.24551 -13.71432 -13.47315 -13.42361 -13.21202 -12.92756 -12.81557 -12.62548 -12.42421 -12.39607 -12.33288 -12.05570 -11.93184 -11.75481 -11.42339 -11.28113 -11.26325 -11.04922 -10.94841 -10.89696 -10.82506 -10.70100 -10.62897 -9.95080 -9.94149 -9.81213 -9.60913 -9.27672 -8.97589 -8.33983 -8.25537 -7.92740 -5.99215 -4.02680 1.92731 3.10085 3.35024 3.39227 3.41451 3.61480 3.71925 4.19163 4.34904 4.44081 4.48126 4.52443 4.56822 4.65973 4.68908 4.84879 4.92589 5.00665 5.04868 5.11673 5.23614 5.25787 5.31141 5.36758 5.38334 5.43308 5.47050 5.51258 5.57202 5.60102 5.69440 5.73170 5.80724 5.85870 5.88810 5.95537 5.98493 6.10919 6.13474 6.28365 6.37451 6.42932 6.51037 6.85845 6.94758 7.06332 7.09927 7.46263 7.56997 7.70974 7.90946 8.01161 8.37541 8.81238 9.04126 9.61134 11.12183 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.002125 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.943014 B =13171.161480 C =14070.241379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.092 4.092 4 C -0.144 4.144 5 C 0.111 3.889 6 H 0.108 0.892 7 O -0.550 6.550 8 C 0.019 3.981 9 N -0.513 5.513 10 C 0.058 3.942 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.120 4.120 14 C 0.104 3.896 15 N -0.617 5.617 16 C 0.130 3.870 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.529 3.471 27 O -0.509 6.509 28 C 0.071 3.929 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.366 0.634 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.021 0.979 50 H 0.016 0.984 51 H 0.261 0.739 52 H 0.051 0.949 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -25.330 5.069 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.129 4.129 4 C -0.183 4.183 5 C 0.051 3.949 6 H 0.125 0.875 7 O -0.355 6.355 8 C -0.110 4.110 9 N -0.237 5.237 10 C -0.069 4.069 11 C -0.162 4.162 12 C -0.112 4.112 13 C -0.158 4.158 14 C -0.020 4.020 15 N -0.351 5.351 16 C 0.010 3.990 17 C -0.026 4.026 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.315 3.685 27 O -0.383 6.383 28 C -0.057 4.057 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.213 0.787 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.039 0.961 50 H 0.034 0.966 51 H 0.071 0.929 52 H 0.069 0.931 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.712 -24.770 3.291 27.187 hybrid contribution 0.208 0.395 1.190 1.271 sum -10.504 -24.374 4.481 26.917 Atomic orbital electron populations 1.23873 0.96048 1.01799 1.01735 1.23023 0.96078 0.98609 0.99420 1.20705 0.98391 0.95300 0.98510 1.22225 0.98714 0.98418 0.98917 1.21990 0.88032 0.85358 0.99484 0.87465 1.86744 1.58407 1.47706 1.42657 1.22955 0.97032 0.93297 0.97726 1.63551 1.06195 1.02995 1.50930 1.22951 0.94324 0.93590 0.96070 1.22634 0.92075 1.02480 0.98983 1.21526 0.96865 0.96568 0.96206 1.22483 0.99357 0.97862 0.96116 1.22042 1.00864 0.95625 0.83461 1.48684 1.39871 1.39498 1.07017 1.21767 0.90628 0.88568 0.98085 1.19398 0.96513 0.89247 0.97419 1.21059 0.99410 0.92910 1.42772 0.92558 1.24999 0.95210 0.98627 0.95422 1.69962 1.17591 1.17963 1.47656 0.86612 0.80905 0.80536 0.79676 1.20140 1.21274 1.20220 1.19874 0.79960 0.81281 0.87423 1.90728 1.66070 1.68411 1.13116 1.22694 0.94770 0.93923 0.94283 0.88718 0.88538 0.87630 0.90728 0.90842 0.90933 0.91761 0.78657 0.94775 0.90207 0.89720 0.92305 0.90033 0.90800 0.89480 0.90096 0.90749 0.91212 0.91810 0.91223 0.96081 0.96573 0.92903 0.93091 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 14.32 29.02 0.42 -0.88 16 2 C -0.15 -1.03 9.52 -36.03 -0.34 -1.38 16 3 C -0.09 -0.66 5.55 -27.89 -0.15 -0.82 16 4 C -0.14 -0.94 4.88 -26.73 -0.13 -1.07 16 5 C 0.11 0.97 3.22 -26.73 -0.09 0.88 16 6 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 7 O -0.55 -5.37 10.49 -35.23 -0.37 -5.74 16 8 C 0.02 0.17 4.45 -3.83 -0.02 0.15 16 9 N -0.51 -6.48 5.16 -231.68 -1.20 -7.68 16 10 C 0.06 0.74 5.49 -2.63 -0.01 0.73 16 11 C -0.12 -1.54 5.94 -25.54 -0.15 -1.69 16 12 C -0.11 -1.45 0.67 -155.37 -0.10 -1.55 16 13 C -0.12 -1.25 6.26 -25.67 -0.16 -1.41 16 14 C 0.10 1.40 7.37 -2.87 -0.02 1.38 16 15 N -0.62 -11.43 2.95 -172.57 -0.51 -11.94 16 16 C 0.13 2.81 5.88 -4.04 -0.02 2.79 16 17 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 18 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 22 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 C 0.53 10.07 6.73 -11.36 -0.08 10.00 16 27 O -0.51 -11.97 17.51 5.55 0.10 -11.87 16 28 C 0.07 0.86 5.53 -2.91 -0.02 0.84 16 29 H 0.09 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 31 H 0.11 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.07 0.60 7.47 -51.93 -0.39 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.37 2.40 7.93 45.56 0.36 2.76 16 37 H 0.03 0.26 7.96 -51.93 -0.41 -0.15 16 38 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 0.59 5.20 -51.93 -0.27 0.32 16 41 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 42 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 43 H 0.09 0.71 7.62 -51.93 -0.40 0.31 16 44 H 0.08 0.72 7.97 -51.93 -0.41 0.30 16 45 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.60 7.96 -51.93 -0.41 1.19 16 49 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 52 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 53 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 LS Contribution 419.00 15.07 6.31 6.31 Total: -1.00 -35.16 419.00 -10.40 -45.57 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -9.01 Total: 0.63 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.44 Total: -5.62 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.97 Total: -46.28 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.27 Total: -17.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.16 -10.40 -45.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274621885.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.432 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds