Wall clock time and date at job start Tue Mar 31 2020 19:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00269 * 2 1 4 4 C 1.52999 * 109.46953 * 125.00258 * 3 2 1 5 5 C 1.53006 * 109.47054 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47002 * 304.99688 * 5 4 3 7 7 O 1.42895 * 109.47000 * 64.99718 * 5 4 3 8 8 C 1.52997 * 109.47127 * 185.00114 * 5 4 3 9 9 N 1.46896 * 109.47114 * 179.97438 * 8 5 4 10 10 C 1.47558 * 110.99880 * 69.87258 * 9 8 5 11 11 C 1.54582 * 107.29045 * 123.20190 * 10 9 8 12 12 C 1.53696 * 102.86415 * 20.97281 * 11 10 9 13 13 C 1.53220 * 111.53391 * 205.84537 * 12 11 10 14 14 C 1.54795 * 101.38877 * 261.15869 * 13 12 11 15 15 N 1.46924 * 105.54768 * 335.82186 * 14 13 12 16 16 C 1.46493 * 124.38517 * 196.74592 * 15 14 13 17 17 C 1.53003 * 109.47361 * 270.03305 * 16 15 14 18 18 C 1.50693 * 109.47304 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47128 * 59.99653 * 22 20 18 24 24 H 1.48500 * 109.47397 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46996 * 299.99663 * 22 20 18 26 26 C 1.34892 * 111.23850 * 16.75232 * 15 14 13 27 27 O 1.21286 * 125.21652 * 178.79880 * 26 15 14 28 28 C 1.48125 * 111.00158 * 190.81370 * 9 8 5 29 29 H 1.08001 * 120.00066 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00018 * 359.97438 * 1 2 3 31 31 H 1.08010 * 119.99559 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47093 * 5.00507 * 3 2 1 33 33 H 1.08995 * 109.47083 * 245.00067 * 3 2 1 34 34 H 1.08997 * 109.47394 * 59.99888 * 4 3 2 35 35 H 1.09004 * 109.47644 * 299.99960 * 4 3 2 36 36 H 0.96696 * 113.99976 * 60.00990 * 7 5 4 37 37 H 1.09001 * 109.47289 * 299.99953 * 8 5 4 38 38 H 1.09004 * 109.47261 * 59.99697 * 8 5 4 39 39 H 1.09000 * 109.88001 * 242.61968 * 10 9 8 40 40 H 1.09001 * 109.87892 * 3.78157 * 10 9 8 41 41 H 1.08993 * 110.73846 * 139.31939 * 11 10 9 42 42 H 1.09000 * 110.73525 * 262.63305 * 11 10 9 43 43 H 1.09003 * 111.03693 * 19.18769 * 13 12 11 44 44 H 1.08998 * 111.03671 * 143.12746 * 13 12 11 45 45 H 1.09009 * 110.22793 * 216.80603 * 14 13 12 46 46 H 1.08998 * 110.30660 * 94.88714 * 14 13 12 47 47 H 1.09003 * 109.46731 * 30.02499 * 16 15 14 48 48 H 1.08994 * 109.47333 * 150.02686 * 16 15 14 49 49 H 1.09003 * 109.46540 * 299.99311 * 17 16 15 50 50 H 1.08994 * 109.47403 * 59.99424 * 17 16 15 51 51 H 0.96993 * 120.00322 * 180.02562 * 21 20 18 52 52 H 1.09001 * 110.39951 * 333.88763 * 28 9 8 53 53 H 1.09004 * 110.39815 * 96.29138 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6582 1.1820 6 1 4.2857 2.7975 0.2163 7 8 2.8885 3.7337 1.4162 8 6 4.8578 2.6362 2.2869 9 7 5.5923 3.9083 2.2869 10 6 4.7347 5.0141 2.7552 11 6 5.4446 5.6656 3.9640 12 6 6.9072 5.2325 3.7762 13 6 7.6602 5.2012 5.1103 14 6 8.4033 6.5586 5.0738 15 7 8.5212 6.9049 3.6508 16 6 9.4436 7.9104 3.1177 17 6 8.7532 9.2756 3.0962 18 6 9.7019 10.3097 2.5472 19 1 10.6979 10.0221 2.2443 20 6 9.2988 11.6232 2.4325 21 7 8.0861 11.9736 2.8017 22 14 10.4751 12.9053 1.7526 23 1 10.8722 12.5299 0.3718 24 1 9.8049 14.2303 1.7315 25 1 11.6831 12.9747 2.6135 26 6 7.6699 6.1775 2.8987 27 8 7.5422 6.2731 1.6964 28 6 6.7860 3.8321 3.1606 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4025 -0.9313 34 1 3.7399 0.5064 1.0920 35 1 2.4774 1.2354 2.1131 36 1 2.4192 3.6750 2.2596 37 1 4.3718 2.4968 3.2526 38 1 5.5528 1.8157 2.1082 39 1 4.6090 5.7482 1.9595 40 1 3.7633 4.6257 3.0611 41 1 5.3555 6.7512 3.9247 42 1 5.0447 5.2783 4.9011 43 1 6.9667 5.1570 5.9501 44 1 8.3646 4.3700 5.1425 45 1 9.3926 6.4588 5.5207 46 1 7.8274 7.3194 5.6006 47 1 10.3301 7.9616 3.7500 48 1 9.7355 7.6347 2.1044 49 1 7.8667 9.2244 2.4639 50 1 8.4613 9.5512 4.1095 51 1 7.8024 12.8975 2.7206 52 1 6.6386 3.0855 3.9409 53 1 7.6731 3.5978 2.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274621885.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:08 Heat of formation + Delta-G solvation = -92.547652 kcal Electronic energy + Delta-G solvation = -29734.969640 eV Core-core repulsion = 25798.450266 eV Total energy + Delta-G solvation = -3936.519374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12119 -39.85516 -38.13866 -37.39676 -36.04886 -35.64385 -34.14488 -32.66525 -31.52267 -30.50172 -29.31934 -28.08207 -27.00072 -24.91879 -24.10331 -23.56047 -22.41022 -21.95861 -21.65651 -20.55901 -19.88221 -18.68904 -17.56248 -17.34366 -17.08080 -16.83653 -16.67011 -16.42013 -16.33711 -16.03064 -15.54385 -15.19871 -14.81487 -14.77718 -14.48580 -14.30265 -14.24137 -14.06676 -13.72510 -13.70486 -13.50819 -13.19548 -13.18171 -13.08159 -12.90343 -12.83142 -12.68023 -12.54381 -12.09321 -11.97668 -11.94139 -11.91056 -11.82714 -11.73908 -11.62134 -11.50677 -11.44190 -10.63407 -10.62838 -10.51316 -10.15705 -9.52233 -9.11069 -8.25496 -6.39065 1.36965 1.41932 1.42138 1.49377 1.64766 2.17497 2.40671 2.90547 3.07546 3.33451 3.44797 3.52679 3.61360 3.87242 3.91692 4.06284 4.10244 4.12691 4.24833 4.28217 4.31962 4.38784 4.42600 4.50813 4.54715 4.59541 4.62438 4.68596 4.72715 4.75061 4.80136 4.85055 4.86102 4.92688 4.92768 4.98239 5.04133 5.07530 5.19240 5.26198 5.31948 5.32483 5.37376 5.44591 5.60112 5.77584 5.82088 5.92638 6.07018 6.13856 6.26098 6.35020 6.76252 6.91817 7.29809 7.32895 8.86574 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.002125 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.943014 B =13171.161480 C =14070.241379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.131 4.131 5 C 0.112 3.888 6 H 0.077 0.923 7 O -0.572 6.572 8 C 0.023 3.977 9 N -0.546 5.546 10 C 0.065 3.935 11 C -0.119 4.119 12 C -0.103 4.103 13 C -0.100 4.100 14 C 0.092 3.908 15 N -0.625 5.625 16 C 0.143 3.857 17 C 0.025 3.975 18 C -0.548 4.548 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.257 1.257 26 C 0.511 3.489 27 O -0.572 6.572 28 C 0.078 3.922 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.380 0.620 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.048 0.952 49 H -0.032 1.032 50 H 0.000 1.000 51 H 0.265 0.735 52 H 0.096 0.904 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 -27.804 7.807 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.176 4.176 3 C -0.130 4.130 4 C -0.169 4.169 5 C 0.053 3.947 6 H 0.095 0.905 7 O -0.379 6.379 8 C -0.105 4.105 9 N -0.271 5.271 10 C -0.063 4.063 11 C -0.158 4.158 12 C -0.107 4.107 13 C -0.137 4.137 14 C -0.030 4.030 15 N -0.358 5.358 16 C 0.021 3.979 17 C -0.013 4.013 18 C -0.586 4.586 19 H 0.085 0.915 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.182 1.182 26 C 0.299 3.701 27 O -0.451 6.451 28 C -0.050 4.050 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.067 0.933 49 H -0.013 1.013 50 H 0.018 0.982 51 H 0.073 0.927 52 H 0.113 0.887 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.148 -27.277 6.086 29.733 hybrid contribution -0.025 1.206 0.279 1.238 sum -10.173 -26.070 6.365 28.699 Atomic orbital electron populations 1.24010 0.96164 1.02268 1.01375 1.23080 0.96198 0.98606 0.99727 1.20677 0.98336 0.95374 0.98581 1.22097 0.98490 0.97201 0.99094 1.21916 0.88241 0.86221 0.98306 0.90484 1.86721 1.58834 1.48526 1.43860 1.22995 0.96979 0.91682 0.98833 1.63347 1.07023 1.04517 1.52189 1.22756 0.96096 0.92948 0.94479 1.22685 0.91714 1.00478 1.00897 1.21535 0.96701 0.95844 0.96668 1.22583 0.99682 0.96398 0.95084 1.22429 1.02911 0.97576 0.80071 1.48836 1.39048 1.38328 1.09608 1.21316 0.91649 0.86827 0.98076 1.19195 0.94752 0.92388 0.94953 1.21532 1.00171 0.93825 1.43069 0.91496 1.26060 0.97107 1.01247 0.95471 1.70115 1.19769 1.18676 1.48709 0.85393 0.78778 0.77121 0.79102 1.19606 1.20718 1.18181 1.21055 0.79820 0.81867 0.87336 1.90675 1.67810 1.70419 1.16153 1.22681 0.93815 0.93612 0.94889 0.87541 0.88882 0.86480 0.91984 0.91869 0.89704 0.90275 0.77016 0.92018 0.89040 0.95218 0.89253 0.93543 0.86107 0.85635 0.87338 0.88287 0.91754 0.89064 0.93344 1.01345 0.98194 0.92669 0.88657 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -1.93 9.52 25.65 0.24 -1.68 16 3 C -0.09 -1.29 5.55 29.85 0.17 -1.12 16 4 C -0.13 -1.46 4.88 30.60 0.15 -1.32 16 5 C 0.11 1.90 3.22 30.60 0.10 1.99 16 6 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 7 O -0.57 -11.14 10.49 -148.98 -1.56 -12.70 16 8 C 0.02 0.36 4.45 86.30 0.38 0.74 16 9 N -0.55 -13.43 5.16 -886.91 -4.58 -18.01 16 10 C 0.06 1.66 5.49 86.72 0.48 2.14 16 11 C -0.12 -2.85 5.94 31.37 0.19 -2.66 16 12 C -0.10 -2.64 0.67 -52.74 -0.04 -2.67 16 13 C -0.10 -1.66 6.26 31.28 0.20 -1.46 16 14 C 0.09 2.31 7.37 86.91 0.64 2.95 16 15 N -0.63 -23.74 2.95 -818.21 -2.41 -26.15 16 16 C 0.14 6.48 5.88 86.38 0.51 6.98 16 17 C 0.03 1.43 5.30 29.85 0.16 1.59 16 18 C -0.55 -32.61 9.11 25.60 0.23 -32.38 16 19 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 20 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 21 N -0.93 -59.26 13.29 21.45 0.28 -58.98 16 22 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 C 0.51 20.33 6.73 87.36 0.59 20.92 16 27 O -0.57 -29.22 17.51 -3.05 -0.05 -29.27 16 28 C 0.08 1.69 5.53 86.22 0.48 2.17 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.09 1.15 7.84 -2.91 -0.02 1.12 16 31 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.06 1.01 7.47 -2.39 -0.02 0.99 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.38 4.44 7.93 -74.06 -0.59 3.85 16 37 H 0.06 0.65 7.96 -2.39 -0.02 0.64 16 38 H 0.09 1.22 8.07 -2.38 -0.02 1.20 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.66 5.20 -2.39 -0.01 1.65 16 41 H 0.05 1.43 8.00 -2.39 -0.02 1.41 16 42 H 0.12 1.78 7.74 -2.39 -0.02 1.76 16 43 H 0.13 1.23 7.62 -2.39 -0.02 1.22 16 44 H 0.11 1.30 7.97 -2.39 -0.02 1.28 16 45 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 48 H 0.05 2.36 7.96 -2.39 -0.02 2.34 16 49 H -0.03 -2.12 8.14 -2.39 -0.02 -2.14 16 50 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 52 H 0.10 1.26 7.70 -2.39 -0.02 1.24 16 53 H 0.06 1.59 8.01 -2.39 -0.02 1.57 16 Total: -1.00 -85.33 419.00 -0.12 -85.44 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.28 Total: 16.79 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.90 Total: -4.83 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -6.71 Total: -103.14 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.62 Total: -41.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -85.33 -0.12 -85.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274621885.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.103 kcal (2) G-P(sol) polarization free energy of solvation -85.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds