Wall clock time and date at job start Tue Mar 31 2020 19:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.53005 * 109.47348 * 125.00153 * 3 2 1 5 5 C 1.52997 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47194 * 55.00530 * 5 4 3 7 7 O 1.42897 * 109.47203 * 294.99870 * 5 4 3 8 8 C 1.53000 * 109.47107 * 174.99979 * 5 4 3 9 9 N 1.46896 * 109.47391 * 185.00125 * 8 5 4 10 10 C 1.48625 * 110.99865 * 307.45294 * 9 8 5 11 11 C 1.55164 * 103.35955 * 200.85197 * 10 9 8 12 12 C 1.53612 * 102.65806 * 36.58509 * 11 10 9 13 13 C 1.53634 * 110.82468 * 99.45566 * 12 11 10 14 14 C 1.54880 * 101.43218 * 96.68117 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.88213 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.34754 * 111.25553 * 342.78590 * 15 14 13 27 27 O 1.21285 * 125.13533 * 181.28276 * 26 15 14 28 28 C 1.48184 * 111.00154 * 190.00157 * 9 8 5 29 29 H 1.08001 * 120.00162 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99359 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00362 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47125 * 5.00219 * 3 2 1 33 33 H 1.08997 * 109.47809 * 245.00398 * 3 2 1 34 34 H 1.08996 * 109.46941 * 59.99994 * 4 3 2 35 35 H 1.09000 * 109.46617 * 300.00356 * 4 3 2 36 36 H 0.96696 * 114.00142 * 300.00161 * 7 5 4 37 37 H 1.09008 * 109.47214 * 65.00137 * 8 5 4 38 38 H 1.09004 * 109.47327 * 305.00662 * 8 5 4 39 39 H 1.09001 * 110.64152 * 319.32254 * 10 9 8 40 40 H 1.09002 * 110.64194 * 82.22425 * 10 9 8 41 41 H 1.08993 * 110.77434 * 278.29590 * 11 10 9 42 42 H 1.09000 * 110.77321 * 154.87992 * 11 10 9 43 43 H 1.08998 * 111.01883 * 214.95100 * 13 12 11 44 44 H 1.08997 * 111.02252 * 338.84395 * 13 12 11 45 45 H 1.08997 * 110.39509 * 265.84579 * 14 13 12 46 46 H 1.09000 * 110.17573 * 143.80788 * 14 13 12 47 47 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 48 48 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 49 49 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 50 50 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 51 51 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 52 52 H 1.09001 * 110.02174 * 26.33676 * 28 9 8 53 53 H 1.09001 * 110.05914 * 264.95918 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 1 3.0910 3.4866 1.1823 7 8 4.6211 2.7347 0.0152 8 6 4.6792 2.7394 2.4312 9 7 5.3210 4.0593 2.4935 10 6 6.0240 4.3703 1.2215 11 6 7.0454 5.4630 1.6342 12 6 7.4745 5.0097 3.0378 13 6 8.8195 4.2692 2.9852 14 6 9.8090 5.4037 3.3491 15 7 9.0238 6.3736 4.1238 16 6 9.6034 7.4187 4.9712 17 6 9.7890 6.8796 6.3910 18 6 10.3859 7.9545 7.2625 19 1 10.6100 8.9252 6.8455 20 6 10.6448 7.6989 8.5924 21 7 11.1652 8.6372 9.3530 22 14 10.2566 6.0202 9.3137 23 1 11.4394 5.1339 9.1697 24 1 9.9194 6.1657 10.7526 25 1 9.1024 5.4263 8.5924 26 6 7.7014 6.1815 3.9500 27 8 6.8263 6.8535 4.4537 28 6 6.3597 4.0954 3.5497 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.7400 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 5.2767 2.0271 -0.0511 37 1 5.4449 1.9648 2.3873 38 1 4.0641 2.5922 3.3190 39 1 6.5381 3.4877 0.8409 40 1 5.3241 4.7554 0.4799 41 1 6.5689 6.4425 1.6732 42 1 7.8969 5.4729 0.9539 43 1 8.8524 3.4656 3.7208 44 1 9.0172 3.8883 1.9833 45 1 10.2000 5.8712 2.4454 46 1 10.6257 5.0105 3.9545 47 1 8.9357 8.2799 4.9940 48 1 10.5702 7.7192 4.5673 49 1 10.4568 6.0183 6.3682 50 1 8.8222 6.5791 6.7948 51 1 11.3477 8.4573 10.2885 52 1 6.7500 3.0927 3.7238 53 1 5.9411 4.4980 4.4721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274621886.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:12 Heat of formation + Delta-G solvation = -65.737407 kcal Electronic energy + Delta-G solvation = -29648.928737 eV Core-core repulsion = 25713.571942 eV Total energy + Delta-G solvation = -3935.356795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.05414 -39.18679 -37.32503 -36.04518 -35.51854 -34.00052 -32.70226 -31.79060 -30.60074 -29.38848 -28.46322 -27.38964 -25.26714 -24.07586 -23.22719 -21.96166 -21.65068 -21.14934 -20.22097 -20.05768 -18.67657 -17.04462 -16.88395 -16.79292 -16.13507 -15.87136 -15.59853 -15.34104 -15.05668 -14.94384 -14.45365 -14.16067 -14.02568 -13.88717 -13.57305 -13.21115 -13.17879 -12.93270 -12.75294 -12.62496 -12.47439 -12.30693 -12.10432 -11.99357 -11.82637 -11.56086 -11.54577 -11.42485 -11.33895 -11.12579 -11.04797 -10.99729 -10.66553 -10.46427 -10.17180 -10.03620 -9.88725 -9.66538 -9.36017 -9.16162 -8.56448 -8.55181 -8.15111 -6.07153 -4.06006 1.85297 2.91453 3.28185 3.36747 3.42509 3.43966 3.66985 3.98978 4.20186 4.28367 4.39078 4.43530 4.45485 4.52017 4.62177 4.73933 4.81306 4.89181 4.95590 5.03612 5.07618 5.15730 5.22348 5.26929 5.27498 5.35799 5.38956 5.41617 5.47277 5.52509 5.61744 5.67462 5.72543 5.74010 5.80858 5.82178 5.89015 6.01791 6.04639 6.06255 6.20114 6.32197 6.34169 6.59728 6.68804 6.84062 6.85554 7.15938 7.22844 7.35084 7.63679 7.74902 8.46901 8.61171 8.96085 9.54823 11.05968 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002102 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.199103 B =13318.577117 C =14011.423245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.107 3.893 6 H 0.108 0.892 7 O -0.555 6.555 8 C 0.015 3.985 9 N -0.511 5.511 10 C 0.053 3.947 11 C -0.106 4.106 12 C -0.106 4.106 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.616 5.616 16 C 0.137 3.863 17 C -0.024 4.024 18 C -0.521 4.521 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.900 5.900 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.526 3.474 27 O -0.521 6.521 28 C 0.060 3.940 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.369 0.631 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.020 0.980 51 H 0.264 0.736 52 H 0.050 0.950 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 -19.656 -22.572 32.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.173 4.173 3 C -0.127 4.127 4 C -0.183 4.183 5 C 0.048 3.952 6 H 0.126 0.874 7 O -0.361 6.361 8 C -0.114 4.114 9 N -0.235 5.235 10 C -0.074 4.074 11 C -0.144 4.144 12 C -0.111 4.111 13 C -0.161 4.161 14 C -0.022 4.022 15 N -0.350 5.350 16 C 0.017 3.983 17 C -0.062 4.062 18 C -0.560 4.560 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.191 1.191 26 C 0.312 3.688 27 O -0.396 6.396 28 C -0.068 4.068 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.216 0.784 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.030 0.970 50 H 0.038 0.962 51 H 0.074 0.926 52 H 0.069 0.931 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.350 -18.272 -22.053 32.033 hybrid contribution 0.955 -2.104 0.733 2.424 sum -13.395 -20.376 -21.321 32.391 Atomic orbital electron populations 1.23878 0.96038 1.01869 1.01551 1.22999 0.96081 0.98578 0.99610 1.20696 0.97925 0.95144 0.98983 1.22205 0.98867 0.97775 0.99422 1.21995 0.91643 0.97789 0.83734 0.87380 1.86699 1.51379 1.53731 1.44273 1.23016 0.98314 0.90383 0.99702 1.64916 1.27573 1.26742 1.04226 1.23336 0.95313 0.96653 0.92096 1.22448 0.99030 1.00322 0.92622 1.21523 0.96222 0.95986 0.97322 1.22749 0.93001 0.97418 1.02919 1.22096 0.94866 0.89337 0.95880 1.48672 1.06378 1.33476 1.46456 1.21575 0.97623 0.88433 0.90718 1.19886 0.96978 0.97180 0.92139 1.20970 1.41462 0.99333 0.94217 0.90778 1.24972 0.94411 0.96819 0.96957 1.69905 1.43956 1.33214 1.06827 0.86776 0.79245 0.84907 0.78391 1.20319 1.21239 1.19071 1.20157 0.82753 0.84993 0.80870 1.90717 1.46645 1.50972 1.51269 1.22717 0.90245 0.97339 0.96514 0.88545 0.88634 0.87604 0.91420 0.90315 0.91585 0.90748 0.78379 0.94478 0.89731 0.93653 0.88741 0.90208 0.90384 0.90042 0.89451 0.91352 0.90195 0.90519 0.91038 0.97009 0.96166 0.92648 0.93137 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 14.32 29.01 0.42 -0.72 16 2 C -0.15 -0.90 9.52 -36.03 -0.34 -1.24 16 3 C -0.09 -0.52 5.55 -27.88 -0.15 -0.68 16 4 C -0.14 -0.77 4.88 -26.73 -0.13 -0.90 16 5 C 0.11 0.72 2.92 -26.73 -0.08 0.64 16 6 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 7 O -0.56 -3.66 9.37 -35.23 -0.33 -3.99 16 8 C 0.01 0.12 4.85 -3.83 -0.02 0.10 16 9 N -0.51 -5.62 5.41 -230.61 -1.25 -6.86 16 10 C 0.05 0.51 4.71 -1.72 -0.01 0.50 16 11 C -0.11 -1.17 6.11 -25.27 -0.15 -1.33 16 12 C -0.11 -1.37 0.77 -155.25 -0.12 -1.48 16 13 C -0.12 -1.25 6.08 -25.41 -0.15 -1.40 16 14 C 0.10 1.26 7.37 -2.84 -0.02 1.24 16 15 N -0.62 -10.72 2.94 -172.42 -0.51 -11.23 16 16 C 0.14 2.82 5.89 -4.04 -0.02 2.79 16 17 C -0.02 -0.58 4.36 -27.88 -0.12 -0.70 16 18 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 22 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 26 C 0.53 9.53 6.63 -11.23 -0.07 9.45 16 27 O -0.52 -11.74 17.17 5.55 0.10 -11.65 16 28 C 0.06 0.75 6.01 -3.12 -0.02 0.73 16 29 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 30 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.08 0.48 7.82 -51.93 -0.41 0.08 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.37 1.39 8.66 45.56 0.39 1.78 16 37 H 0.04 0.26 7.82 -51.92 -0.41 -0.14 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.35 6.91 -51.93 -0.36 0.00 16 40 H 0.09 0.96 7.10 -51.93 -0.37 0.59 16 41 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 42 H 0.08 0.70 7.64 -51.93 -0.40 0.31 16 43 H 0.08 0.80 7.62 -51.93 -0.40 0.41 16 44 H 0.09 0.64 7.67 -51.93 -0.40 0.24 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.08 1.70 7.93 -51.93 -0.41 1.29 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 50 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 51 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 52 H 0.05 0.54 6.86 -51.93 -0.36 0.18 16 53 H 0.09 1.38 7.46 -51.93 -0.39 0.99 16 LS Contribution 413.40 15.07 6.23 6.23 Total: -1.00 -34.74 413.40 -9.97 -44.70 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.88 Total: -1.12 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.44 Total: -6.41 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.98 Total: -45.29 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.23 Total: -15.63 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.74 -9.97 -44.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274621886.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.035 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds