Wall clock time and date at job start Tue Mar 31 2020 19:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.53005 * 109.47348 * 125.00153 * 3 2 1 5 5 C 1.52997 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47194 * 55.00530 * 5 4 3 7 7 O 1.42897 * 109.47203 * 294.99870 * 5 4 3 8 8 C 1.53000 * 109.47107 * 174.99979 * 5 4 3 9 9 N 1.46896 * 109.47391 * 185.00125 * 8 5 4 10 10 C 1.48625 * 110.99865 * 307.45294 * 9 8 5 11 11 C 1.55164 * 103.35955 * 200.85197 * 10 9 8 12 12 C 1.53612 * 102.65806 * 36.58509 * 11 10 9 13 13 C 1.53634 * 110.82468 * 99.45566 * 12 11 10 14 14 C 1.54880 * 101.43218 * 96.68117 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.88213 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.34754 * 111.25553 * 342.78590 * 15 14 13 27 27 O 1.21285 * 125.13533 * 181.28276 * 26 15 14 28 28 C 1.48184 * 111.00154 * 190.00157 * 9 8 5 29 29 H 1.08001 * 120.00162 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99359 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00362 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47125 * 5.00219 * 3 2 1 33 33 H 1.08997 * 109.47809 * 245.00398 * 3 2 1 34 34 H 1.08996 * 109.46941 * 59.99994 * 4 3 2 35 35 H 1.09000 * 109.46617 * 300.00356 * 4 3 2 36 36 H 0.96696 * 114.00142 * 300.00161 * 7 5 4 37 37 H 1.09008 * 109.47214 * 65.00137 * 8 5 4 38 38 H 1.09004 * 109.47327 * 305.00662 * 8 5 4 39 39 H 1.09001 * 110.64152 * 319.32254 * 10 9 8 40 40 H 1.09002 * 110.64194 * 82.22425 * 10 9 8 41 41 H 1.08993 * 110.77434 * 278.29590 * 11 10 9 42 42 H 1.09000 * 110.77321 * 154.87992 * 11 10 9 43 43 H 1.08998 * 111.01883 * 214.95100 * 13 12 11 44 44 H 1.08997 * 111.02252 * 338.84395 * 13 12 11 45 45 H 1.08997 * 110.39509 * 265.84579 * 14 13 12 46 46 H 1.09000 * 110.17573 * 143.80788 * 14 13 12 47 47 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 48 48 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 49 49 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 50 50 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 51 51 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 52 52 H 1.09001 * 110.02174 * 26.33676 * 28 9 8 53 53 H 1.09001 * 110.05914 * 264.95918 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 1 3.0910 3.4866 1.1823 7 8 4.6211 2.7347 0.0152 8 6 4.6792 2.7394 2.4312 9 7 5.3210 4.0593 2.4935 10 6 6.0240 4.3703 1.2215 11 6 7.0454 5.4630 1.6342 12 6 7.4745 5.0097 3.0378 13 6 8.8195 4.2692 2.9852 14 6 9.8090 5.4037 3.3491 15 7 9.0238 6.3736 4.1238 16 6 9.6034 7.4187 4.9712 17 6 9.7890 6.8796 6.3910 18 6 10.3859 7.9545 7.2625 19 1 10.6100 8.9252 6.8455 20 6 10.6448 7.6989 8.5924 21 7 11.1652 8.6372 9.3530 22 14 10.2566 6.0202 9.3137 23 1 11.4394 5.1339 9.1697 24 1 9.9194 6.1657 10.7526 25 1 9.1024 5.4263 8.5924 26 6 7.7014 6.1815 3.9500 27 8 6.8263 6.8535 4.4537 28 6 6.3597 4.0954 3.5497 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.7400 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 5.2767 2.0271 -0.0511 37 1 5.4449 1.9648 2.3873 38 1 4.0641 2.5922 3.3190 39 1 6.5381 3.4877 0.8409 40 1 5.3241 4.7554 0.4799 41 1 6.5689 6.4425 1.6732 42 1 7.8969 5.4729 0.9539 43 1 8.8524 3.4656 3.7208 44 1 9.0172 3.8883 1.9833 45 1 10.2000 5.8712 2.4454 46 1 10.6257 5.0105 3.9545 47 1 8.9357 8.2799 4.9940 48 1 10.5702 7.7192 4.5673 49 1 10.4568 6.0183 6.3682 50 1 8.8222 6.5791 6.7948 51 1 11.3477 8.4573 10.2885 52 1 6.7500 3.0927 3.7238 53 1 5.9411 4.4980 4.4721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274621886.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:11 Heat of formation + Delta-G solvation = -91.098471 kcal Electronic energy + Delta-G solvation = -29650.028475 eV Core-core repulsion = 25713.571942 eV Total energy + Delta-G solvation = -3936.456533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15623 -39.95805 -38.18523 -37.45702 -36.05077 -35.59984 -34.21588 -32.74751 -31.68528 -30.55711 -29.43880 -28.15754 -27.02034 -24.89675 -24.03672 -23.26111 -22.49898 -22.06179 -21.43159 -20.56247 -19.95662 -19.10018 -17.69082 -17.46743 -17.21384 -16.83328 -16.53527 -16.27760 -16.08620 -15.93363 -15.86184 -15.30381 -15.06879 -14.82436 -14.62479 -14.57289 -14.50244 -13.97898 -13.76116 -13.64891 -13.58165 -13.19608 -13.13259 -12.97502 -12.81594 -12.73448 -12.61528 -12.36248 -12.23116 -12.03215 -11.98099 -11.91816 -11.81045 -11.79662 -11.62918 -11.55596 -11.49528 -10.83361 -10.71374 -10.60401 -10.11527 -9.61023 -9.28923 -8.36032 -6.41198 1.27380 1.32447 1.42394 1.43813 1.55159 2.11640 2.29998 2.95059 2.98671 3.21453 3.39561 3.53930 3.61157 3.81464 3.94127 4.04491 4.09128 4.10467 4.23327 4.25678 4.29103 4.36336 4.41701 4.44869 4.51084 4.54790 4.66249 4.66770 4.71272 4.76225 4.78383 4.80931 4.85737 4.93675 4.95773 4.97948 5.08274 5.11593 5.13343 5.20294 5.22117 5.27148 5.32052 5.37063 5.47645 5.71956 5.78014 5.91770 5.92821 6.15093 6.17690 6.26883 6.65007 6.92526 7.19700 7.24741 8.80332 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002102 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.199103 B =13318.577117 C =14011.423245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.135 4.135 5 C 0.119 3.881 6 H 0.086 0.914 7 O -0.564 6.564 8 C 0.016 3.984 9 N -0.537 5.537 10 C 0.065 3.935 11 C -0.104 4.104 12 C -0.099 4.099 13 C -0.107 4.107 14 C 0.091 3.909 15 N -0.621 5.621 16 C 0.146 3.854 17 C -0.012 4.012 18 C -0.535 4.535 19 H 0.039 0.961 20 C 0.011 3.989 21 N -0.944 5.944 22 Si 0.950 3.050 23 H -0.253 1.253 24 H -0.282 1.282 25 H -0.264 1.264 26 C 0.510 3.490 27 O -0.583 6.583 28 C 0.063 3.937 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.385 0.615 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.030 0.970 50 H -0.004 1.004 51 H 0.268 0.732 52 H 0.077 0.923 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 -23.941 -24.788 36.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.176 4.176 3 C -0.126 4.126 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.104 0.896 7 O -0.371 6.371 8 C -0.112 4.112 9 N -0.261 5.261 10 C -0.062 4.062 11 C -0.142 4.142 12 C -0.103 4.103 13 C -0.145 4.145 14 C -0.030 4.030 15 N -0.353 5.353 16 C 0.024 3.976 17 C -0.050 4.050 18 C -0.574 4.574 19 H 0.057 0.943 20 C -0.187 4.187 21 N -0.584 5.584 22 Si 0.773 3.227 23 H -0.177 1.177 24 H -0.207 1.207 25 H -0.189 1.189 26 C 0.298 3.702 27 O -0.463 6.463 28 C -0.065 4.065 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.048 0.952 50 H 0.015 0.985 51 H 0.077 0.923 52 H 0.095 0.905 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.282 -22.595 -24.315 35.751 hybrid contribution 0.614 -0.639 1.396 1.654 sum -12.667 -23.234 -22.919 35.008 Atomic orbital electron populations 1.24012 0.96332 1.02226 1.01720 1.23117 0.96152 0.98918 0.99445 1.20660 0.97840 0.94886 0.99166 1.22107 0.98812 0.97432 0.98953 1.21759 0.91210 0.97717 0.83374 0.89631 1.86675 1.51863 1.54745 1.43835 1.23055 0.98694 0.89456 0.99970 1.64808 1.27711 1.29049 1.04572 1.23288 0.94702 0.97064 0.91097 1.22503 1.00404 0.99198 0.92141 1.21527 0.98267 0.93936 0.96591 1.22840 0.89533 0.96288 1.05795 1.22527 0.95053 0.89120 0.96317 1.48771 1.07044 1.33513 1.46010 1.21152 0.98034 0.88607 0.89778 1.19717 0.95400 0.96365 0.93542 1.21288 1.41576 0.99236 0.95284 0.94263 1.25931 0.94121 1.01267 0.97397 1.70045 1.45266 1.35689 1.07425 0.85670 0.79774 0.79811 0.77443 1.17724 1.20719 1.18865 1.21238 0.82266 0.85836 0.80832 1.90667 1.48420 1.53389 1.53819 1.22592 0.90362 0.98118 0.95408 0.88821 0.87824 0.86555 0.92477 0.90386 0.89909 0.91095 0.76586 0.92282 0.90519 0.90463 0.89513 0.93623 0.87270 0.89140 0.84964 0.88588 0.89465 0.93540 0.89100 0.95188 0.98534 0.92258 0.90517 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.17 14.32 67.78 0.97 -1.20 16 2 C -0.16 -1.59 9.52 25.65 0.24 -1.34 16 3 C -0.09 -0.89 5.55 29.85 0.17 -0.73 16 4 C -0.13 -1.14 4.88 30.60 0.15 -0.99 16 5 C 0.12 1.36 2.92 30.59 0.09 1.45 16 6 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 7 O -0.56 -5.65 9.37 -148.98 -1.40 -7.05 16 8 C 0.02 0.23 4.85 86.30 0.42 0.64 16 9 N -0.54 -11.03 5.41 -883.53 -4.78 -15.81 16 10 C 0.07 1.06 4.71 86.71 0.41 1.46 16 11 C -0.10 -2.07 6.11 31.54 0.19 -1.88 16 12 C -0.10 -2.35 0.77 -52.66 -0.04 -2.39 16 13 C -0.11 -1.65 6.08 31.45 0.19 -1.46 16 14 C 0.09 1.92 7.37 86.95 0.64 2.56 16 15 N -0.62 -21.19 2.94 -817.82 -2.41 -23.60 16 16 C 0.15 6.15 5.89 86.38 0.51 6.66 16 17 C -0.01 -0.59 4.36 29.85 0.13 -0.46 16 18 C -0.54 -31.89 9.66 25.60 0.25 -31.65 16 19 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 20 C 0.01 0.63 5.47 84.66 0.46 1.10 16 21 N -0.94 -60.06 13.96 21.45 0.30 -59.77 16 22 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 23 H -0.25 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 26 C 0.51 18.74 6.63 87.51 0.58 19.32 16 27 O -0.58 -28.07 17.17 -3.05 -0.05 -28.12 16 28 C 0.06 1.50 6.01 86.05 0.52 2.02 16 29 H 0.09 1.00 7.84 -2.91 -0.02 0.98 16 30 H 0.10 0.89 8.06 -2.91 -0.02 0.86 16 31 H 0.12 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.06 0.69 7.79 -2.38 -0.02 0.67 16 33 H 0.08 0.81 7.82 -2.39 -0.02 0.79 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.38 1.14 8.66 -74.06 -0.64 0.50 16 37 H 0.06 0.57 7.82 -2.38 -0.02 0.55 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.08 0.78 6.91 -2.39 -0.02 0.77 16 40 H 0.09 1.58 7.10 -2.39 -0.02 1.57 16 41 H 0.04 1.22 7.92 -2.39 -0.02 1.20 16 42 H 0.11 1.47 7.64 -2.39 -0.02 1.45 16 43 H 0.09 1.30 7.62 -2.39 -0.02 1.28 16 44 H 0.13 0.96 7.67 -2.39 -0.02 0.94 16 45 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 48 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 49 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 50 H 0.00 -0.20 7.20 -2.39 -0.02 -0.22 16 51 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 52 H 0.08 1.37 6.86 -2.39 -0.02 1.35 16 53 H 0.05 1.47 7.46 -2.39 -0.02 1.45 16 Total: -1.00 -81.70 413.40 -0.40 -82.10 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.17 Total: 11.44 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.88 Total: -6.88 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -6.89 Total: -99.17 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -1.45 Total: -35.17 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -81.70 -0.40 -82.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274621886.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.997 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds