Wall clock time and date at job start Tue Mar 31 2020 19:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00256 * 2 1 4 4 C 1.53001 * 109.46933 * 59.99807 * 3 2 1 5 5 C 1.53000 * 109.47066 * 299.99696 * 3 2 1 6 6 C 1.52996 * 109.47084 * 179.97438 * 3 2 1 7 7 C 1.52993 * 109.47473 * 64.99859 * 6 3 2 8 8 N 1.46906 * 109.47378 * 179.97438 * 7 6 3 9 9 C 1.47652 * 111.00095 * 266.32303 * 8 7 6 10 10 C 1.52653 * 87.64987 * 222.00226 * 9 8 7 11 11 C 1.52115 * 129.73560 * 164.47229 * 10 9 8 12 12 C 1.52118 * 129.73085 * 246.28356 * 10 9 8 13 13 H 1.09000 * 117.52308 * 133.59083 * 12 10 9 14 14 C 1.50697 * 117.52191 * 348.44269 * 12 10 9 15 15 O 1.21283 * 120.00204 * 359.97438 * 14 12 10 16 16 N 1.34775 * 120.00174 * 179.97438 * 14 12 10 17 17 C 1.47070 * 136.05405 * 359.63065 * 16 14 12 18 18 C 1.53241 * 88.08007 * 207.20104 * 17 16 14 19 19 C 1.50706 * 114.32331 * 220.47088 * 18 17 16 20 20 H 1.07998 * 119.99687 * 93.76197 * 19 18 17 21 21 C 1.37873 * 119.99577 * 273.75602 * 19 18 17 22 22 N 1.31514 * 120.00636 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47205 * 120.00003 * 23 21 19 26 26 H 1.48499 * 109.47351 * 240.00435 * 23 21 19 27 27 C 1.47072 * 136.05972 * 179.97438 * 16 14 12 28 28 C 1.47654 * 110.99850 * 170.00188 * 8 7 6 29 29 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47165 * 300.00294 * 1 2 3 31 31 H 1.09001 * 109.46848 * 59.99967 * 1 2 3 32 32 H 1.08998 * 109.47077 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47083 * 300.00043 * 4 3 2 34 34 H 1.09000 * 109.46998 * 60.00028 * 4 3 2 35 35 H 1.08997 * 109.47108 * 300.00091 * 5 3 2 36 36 H 1.09002 * 109.47044 * 59.99899 * 5 3 2 37 37 H 1.08998 * 109.46865 * 179.97438 * 5 3 2 38 38 H 1.09004 * 109.47108 * 304.99971 * 6 3 2 39 39 H 1.09004 * 109.47368 * 185.00072 * 6 3 2 40 40 H 1.09004 * 109.46862 * 59.99962 * 7 6 3 41 41 H 1.09000 * 109.47250 * 299.99985 * 7 6 3 42 42 H 1.09006 * 113.52703 * 336.69250 * 9 8 7 43 43 H 1.09001 * 113.52266 * 107.30642 * 9 8 7 44 44 H 1.08994 * 117.51972 * 226.39860 * 11 10 9 45 45 H 1.08992 * 117.51839 * 11.55177 * 11 10 9 46 46 H 1.08993 * 113.46623 * 321.92833 * 17 16 14 47 47 H 1.08995 * 113.46992 * 92.37523 * 17 16 14 48 48 H 1.09001 * 114.01829 * 87.71387 * 18 17 16 49 49 H 0.96996 * 120.00300 * 179.97438 * 22 21 19 50 50 H 1.08996 * 113.46467 * 267.62725 * 27 16 14 51 51 H 1.08998 * 113.46309 * 38.00804 * 27 16 14 52 52 H 1.09005 * 113.52349 * 252.68932 * 28 8 7 53 53 H 1.08997 * 113.53114 * 23.23676 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5589 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 6 3.9963 0.5363 -1.3063 8 7 5.4608 0.4208 -1.3059 9 6 6.0836 1.5846 -1.9676 10 6 7.0457 0.6083 -2.6396 11 6 7.9649 0.8156 -3.8337 12 6 8.5485 0.4491 -2.4654 13 1 8.9364 -0.5615 -2.3375 14 6 9.2799 1.5276 -1.7087 15 8 8.6700 2.4776 -1.2654 16 7 10.6120 1.4367 -1.5246 17 6 11.6678 0.4787 -1.8855 18 6 12.4498 0.9565 -0.6573 19 6 13.9322 1.1050 -0.8844 20 1 14.3414 2.0627 -1.1703 21 6 14.7659 0.0182 -0.7270 22 7 14.2675 -1.1481 -0.3792 23 14 16.6035 0.2024 -1.0077 24 1 16.9081 1.6054 -1.3876 25 1 17.3318 -0.1414 0.2399 26 1 17.0316 -0.7102 -2.0983 27 6 11.6483 2.2486 -0.8690 28 6 5.9264 -0.4094 -2.4347 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.0025 3.0603 1.2495 33 1 0.4722 2.1508 1.2492 34 1 1.8804 1.5238 2.1392 35 1 1.8806 1.5237 -2.1392 36 1 0.4723 2.1508 -1.2493 37 1 2.0020 3.0606 -1.2490 38 1 3.8508 0.5684 0.8427 39 1 3.9786 2.1764 0.0902 40 1 3.6810 1.1525 -2.1484 41 1 3.5533 -0.4556 -1.3959 42 1 5.4208 2.0933 -2.6677 43 1 6.5722 2.2692 -1.2744 44 1 7.9691 0.0460 -4.6056 45 1 8.1102 1.8367 -4.1861 46 1 11.3510 -0.5621 -1.8185 47 1 12.1596 0.7102 -2.8303 48 1 12.2035 0.4229 0.2607 49 1 14.8540 -1.9127 -0.2689 50 1 12.1347 2.9561 -1.5406 51 1 11.3145 2.7108 0.0600 52 1 6.2836 -1.3939 -2.1325 53 1 5.2197 -0.4530 -3.2634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277131305.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:31 Heat of formation + Delta-G solvation = 1.821849 kcal Electronic energy + Delta-G solvation = -29179.620983 eV Core-core repulsion = 25247.193777 eV Total energy + Delta-G solvation = -3932.427206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85813 -40.77829 -40.00353 -38.69401 -36.31658 -34.66107 -34.57848 -31.32364 -30.76991 -28.45006 -27.94738 -27.40073 -27.02210 -26.70954 -25.92816 -24.54742 -22.52489 -21.99181 -20.74107 -20.12811 -19.21831 -18.73350 -18.05126 -17.41011 -17.12214 -16.65635 -16.61484 -16.33538 -16.30386 -16.10174 -15.87999 -15.44882 -15.20879 -14.70381 -14.41072 -14.22865 -14.06433 -13.93775 -13.67286 -13.48519 -13.27520 -13.23560 -13.14739 -13.05605 -12.92893 -12.74593 -12.64986 -12.56947 -12.38687 -12.17665 -12.14517 -11.79096 -11.61903 -11.40801 -11.29868 -11.21060 -11.10285 -11.04174 -10.63541 -10.49471 -10.47066 -9.71375 -9.52656 -8.16031 -6.27513 1.46829 1.49749 1.52478 1.61054 1.95192 2.46434 2.62501 2.85785 3.12421 3.14626 3.20812 3.50405 3.70240 3.81777 3.84970 3.89124 3.95129 4.12520 4.26321 4.32663 4.39490 4.41929 4.46928 4.47556 4.51543 4.54398 4.55945 4.62274 4.64514 4.67420 4.70195 4.70412 4.76710 4.82980 4.85098 4.85472 4.88763 4.92229 4.95140 5.00642 5.04133 5.13121 5.14637 5.16889 5.21300 5.36514 5.46045 5.59519 5.81803 6.16044 6.23506 6.34395 6.81528 6.93492 7.21505 7.42772 8.94257 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024951 B = 0.001855 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.924639 B =15094.301166 C =15254.592691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.400 6.400 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.177 4.177 6 C -0.093 4.093 7 C 0.029 3.971 8 N -0.494 5.494 9 C 0.038 3.962 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.164 4.164 13 H 0.127 0.873 14 C 0.557 3.443 15 O -0.587 6.587 16 N -0.644 5.644 17 C 0.118 3.882 18 C 0.020 3.980 19 C -0.526 4.526 20 H 0.068 0.932 21 C 0.020 3.980 22 N -0.919 5.919 23 Si 0.961 3.039 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.279 1.279 27 C 0.106 3.894 28 C 0.051 3.949 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.265 0.735 50 H 0.085 0.915 51 H 0.053 0.947 52 H 0.086 0.914 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.047 2.414 -6.730 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.320 6.320 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.235 4.235 6 C -0.131 4.131 7 C -0.099 4.099 8 N -0.216 5.216 9 C -0.090 4.090 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.185 4.185 13 H 0.145 0.855 14 C 0.349 3.651 15 O -0.469 6.469 16 N -0.377 5.377 17 C -0.005 4.005 18 C 0.001 3.999 19 C -0.564 4.564 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.558 5.558 23 Si 0.786 3.214 24 H -0.187 1.187 25 H -0.211 1.211 26 H -0.205 1.205 27 C -0.016 4.016 28 C -0.078 4.078 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.157 0.843 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.071 0.929 52 H 0.105 0.895 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.310 2.400 -5.778 27.044 hybrid contribution 0.751 0.257 -0.320 0.856 sum -25.559 2.656 -6.098 26.410 Atomic orbital electron populations 1.22934 0.80437 1.03393 1.00900 1.87960 1.20856 1.28025 1.95200 1.21519 0.92707 0.83272 0.95353 1.22394 1.02457 1.01027 0.97502 1.22458 1.02410 1.01007 0.97585 1.21388 0.92525 1.01128 0.98094 1.22685 0.88095 1.01456 0.97695 1.68937 1.09303 1.07128 1.36248 1.23483 0.94685 0.94238 0.96563 1.21906 0.89188 1.00848 1.01993 1.22932 0.98207 1.04048 0.89192 1.21856 0.95026 0.98830 1.02742 0.85545 1.19780 0.79910 0.86340 0.79084 1.90549 1.66682 1.36217 1.53438 1.49963 1.04791 1.27537 1.55413 1.23251 0.84162 0.92322 1.00741 1.20201 0.93965 0.91617 0.94104 1.21229 0.91486 0.96392 1.47307 0.91429 1.25789 1.03210 0.94936 0.94126 1.70072 1.37009 1.01144 1.47533 0.85466 0.79763 0.78581 0.77593 1.18723 1.21059 1.20470 1.23215 0.85532 0.96829 0.96058 1.23369 0.93786 0.97128 0.93469 0.89098 0.93202 0.92841 0.90881 0.90875 0.92604 0.91610 0.91073 0.90944 0.92474 0.91003 0.92181 0.90585 0.89404 0.90620 0.84344 0.88323 0.92408 0.89895 0.94680 0.92647 0.89673 0.92892 0.89541 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.21 113.37 1.16 1.39 16 2 O -0.40 -7.58 9.88 -148.98 -1.47 -9.06 16 3 C 0.11 1.86 0.82 -10.79 -0.01 1.85 16 4 C -0.18 -2.57 8.25 71.98 0.59 -1.98 16 5 C -0.18 -2.30 7.76 71.98 0.56 -1.74 16 6 C -0.09 -1.97 4.83 30.59 0.15 -1.82 16 7 C 0.03 0.60 4.22 86.30 0.36 0.96 16 8 N -0.49 -12.82 6.32 -925.79 -5.85 -18.67 16 9 C 0.04 1.04 7.31 83.97 0.61 1.65 16 10 C -0.14 -3.56 3.13 -52.99 -0.17 -3.73 16 11 C -0.11 -2.40 10.24 30.37 0.31 -2.09 16 12 C -0.16 -5.05 6.02 -11.76 -0.07 -5.12 16 13 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 14 C 0.56 22.30 7.86 87.66 0.69 22.99 16 15 O -0.59 -26.32 15.02 -3.04 -0.05 -26.37 16 16 N -0.64 -26.94 3.69 -858.70 -3.17 -30.11 16 17 C 0.12 5.01 7.98 83.10 0.66 5.67 16 18 C 0.02 0.99 3.77 -11.28 -0.04 0.95 16 19 C -0.53 -26.92 8.82 25.60 0.23 -26.70 16 20 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 21 C 0.02 1.02 5.46 84.65 0.46 1.48 16 22 N -0.92 -50.79 13.26 21.45 0.28 -50.51 16 23 Si 0.96 40.96 29.54 68.60 2.03 42.98 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.11 4.56 8.19 83.19 0.68 5.24 16 28 C 0.05 1.09 7.71 83.97 0.65 1.74 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 0.53 6.42 -2.39 -0.02 0.51 16 31 H 0.05 0.52 6.42 -2.39 -0.02 0.51 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.84 6.54 -2.39 -0.02 0.83 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.87 6.35 -2.39 -0.02 0.86 16 36 H 0.07 0.74 6.54 -2.39 -0.02 0.72 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.06 5.51 -2.38 -0.01 1.04 16 41 H 0.08 1.61 7.76 -2.39 -0.02 1.59 16 42 H 0.09 1.93 7.42 -2.38 -0.02 1.91 16 43 H 0.08 2.65 5.97 -2.39 -0.01 2.63 16 44 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.08 3.37 8.10 -2.39 -0.02 3.35 16 48 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 49 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 50 H 0.09 3.43 8.10 -2.39 -0.02 3.41 16 51 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 53 H 0.10 1.62 7.91 -2.39 -0.02 1.60 16 Total: -1.00 -64.24 416.59 -0.53 -64.77 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.88 Total: 26.21 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.83 Total: 0.74 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -8.74 Total: -99.28 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.52 Total: -35.42 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -64.24 -0.53 -64.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277131305.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.591 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds