Wall clock time and date at job start Tue Mar 31 2020 19:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99712 * 2 1 4 4 C 1.53001 * 109.47157 * 60.00448 * 3 2 1 5 5 C 1.52999 * 109.47309 * 299.99871 * 3 2 1 6 6 C 1.53007 * 109.46542 * 179.97438 * 3 2 1 7 7 C 1.52998 * 109.47143 * 65.00402 * 6 3 2 8 8 N 1.46901 * 109.47011 * 179.97438 * 7 6 3 9 9 C 1.48097 * 111.00116 * 169.99720 * 8 7 6 10 10 C 1.53285 * 85.92619 * 222.87631 * 9 8 7 11 11 C 1.52339 * 128.79973 * 243.48578 * 10 9 8 12 12 C 1.52333 * 128.80662 * 163.14606 * 10 9 8 13 13 H 1.08994 * 117.55343 * 225.29773 * 12 10 9 14 14 C 1.50698 * 117.51586 * 10.43546 * 12 10 9 15 15 O 1.21279 * 120.00132 * 359.81475 * 14 12 10 16 16 N 1.34781 * 119.99962 * 179.81974 * 14 12 10 17 17 C 1.47584 * 134.48977 * 179.97438 * 16 14 12 18 18 C 1.53947 * 86.11400 * 155.35446 * 17 16 14 19 19 C 1.50699 * 113.73702 * 137.94989 * 18 17 16 20 20 H 1.07999 * 120.00803 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47575 * 134.49172 * 359.97438 * 16 14 12 28 28 C 1.48101 * 111.00140 * 70.40739 * 8 7 6 29 29 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46776 * 300.00338 * 1 2 3 31 31 H 1.09000 * 109.47108 * 59.99466 * 1 2 3 32 32 H 1.08995 * 109.46975 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46731 * 299.99101 * 4 3 2 34 34 H 1.08994 * 109.47465 * 59.99619 * 4 3 2 35 35 H 1.09001 * 109.46776 * 300.00231 * 5 3 2 36 36 H 1.08998 * 109.46756 * 60.00208 * 5 3 2 37 37 H 1.09000 * 109.46944 * 180.02562 * 5 3 2 38 38 H 1.08994 * 109.47264 * 304.99689 * 6 3 2 39 39 H 1.09007 * 109.46886 * 185.00188 * 6 3 2 40 40 H 1.08994 * 109.47623 * 59.99506 * 7 6 3 41 41 H 1.09001 * 109.46638 * 299.99115 * 7 6 3 42 42 H 1.08998 * 113.80343 * 108.61813 * 9 8 7 43 43 H 1.09002 * 113.79821 * 337.12457 * 9 8 7 44 44 H 1.09000 * 117.51652 * 134.68411 * 11 10 9 45 45 H 1.09002 * 117.51797 * 349.55144 * 11 10 9 46 46 H 1.09003 * 113.77155 * 41.06216 * 17 16 14 47 47 H 1.09002 * 113.87111 * 269.66915 * 17 16 14 48 48 H 1.08995 * 113.74539 * 269.15625 * 18 17 16 49 49 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 50 50 H 1.09002 * 113.76824 * 90.34958 * 27 16 14 51 51 H 1.08997 * 113.76999 * 318.94298 * 27 16 14 52 52 H 1.09011 * 113.79904 * 22.87690 * 28 8 7 53 53 H 1.08992 * 113.80226 * 251.37808 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 0.0006 7 6 3.9963 0.5365 -1.3064 8 7 5.4607 0.4210 -1.3060 9 6 5.9278 -0.4117 -2.4382 10 6 6.8871 -1.0524 -1.4289 11 6 8.4104 -1.0351 -1.4160 12 6 7.6564 -2.3623 -1.5418 13 1 7.6545 -3.0244 -0.6759 14 6 7.6718 -3.0473 -2.8840 15 8 7.0826 -2.5549 -3.8228 16 7 8.3401 -4.2071 -3.0411 17 6 8.5636 -5.1268 -4.1735 18 6 9.8382 -5.5654 -3.4298 19 6 10.0722 -7.0539 -3.4531 20 1 9.3743 -7.7025 -3.9616 21 6 11.1775 -7.5878 -2.8250 22 7 11.3821 -8.8868 -2.8457 23 14 12.3843 -6.4662 -1.9448 24 1 11.9669 -6.3038 -0.5288 25 1 12.4027 -5.1389 -2.6106 26 1 13.7428 -7.0639 -1.9949 27 6 9.1424 -5.0673 -2.1499 28 6 5.9122 -0.6021 -0.3350 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.0025 3.0603 1.2495 33 1 0.4722 2.1508 1.2492 34 1 1.8804 1.5238 2.1392 35 1 1.8804 1.5238 -2.1392 36 1 0.4722 2.1508 -1.2492 37 1 2.0025 3.0604 -1.2494 38 1 3.8508 0.5685 0.8427 39 1 3.9785 2.1765 0.0903 40 1 3.6810 1.1525 -2.1485 41 1 3.5533 -0.4555 -1.3959 42 1 6.4289 0.1545 -3.2233 43 1 5.1715 -1.0964 -2.8220 44 1 8.9036 -0.8241 -0.4672 45 1 8.9172 -0.6578 -2.3042 46 1 8.7588 -4.6205 -5.1188 47 1 7.8124 -5.9121 -4.2588 48 1 10.7241 -4.9916 -3.7014 49 1 12.1594 -9.2625 -2.4036 50 1 8.5605 -5.8346 -1.6393 51 1 9.7998 -4.5135 -1.4797 52 1 5.1512 -1.3437 -0.0916 53 1 6.4011 -0.1867 0.5462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277131306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:34 Heat of formation + Delta-G solvation = -2.912212 kcal Electronic energy + Delta-G solvation = -29273.287156 eV Core-core repulsion = 25340.654666 eV Total energy + Delta-G solvation = -3932.632490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76522 -40.74563 -39.97302 -38.67185 -36.30107 -34.65668 -34.54537 -31.49217 -30.83817 -28.47859 -27.98658 -27.60007 -27.23836 -26.86889 -25.80522 -24.41589 -22.63119 -21.57296 -20.72726 -20.02070 -19.32779 -19.13935 -18.17684 -17.39416 -17.20024 -16.81827 -16.62936 -16.56946 -16.16829 -16.06910 -15.66325 -15.26252 -15.06712 -14.84710 -14.73517 -14.44217 -14.20676 -14.04573 -13.67315 -13.49270 -13.47315 -13.38266 -13.22853 -12.91734 -12.87392 -12.72638 -12.57744 -12.45122 -12.40779 -12.35516 -11.83522 -11.80487 -11.62559 -11.53040 -11.42884 -11.30919 -11.17902 -11.11228 -10.76472 -10.59240 -10.48666 -9.78054 -9.60587 -8.26448 -6.34628 1.42084 1.45701 1.46842 1.54662 1.90377 2.39565 2.58077 2.86039 3.04614 3.05988 3.16271 3.48059 3.71509 3.71961 3.85418 3.87967 4.02977 4.07622 4.18906 4.26470 4.31531 4.35834 4.43998 4.45669 4.47208 4.51509 4.53270 4.57350 4.61707 4.65481 4.67443 4.72023 4.73122 4.76662 4.78947 4.84763 4.85118 4.86654 4.93298 4.94568 5.00863 5.06105 5.09736 5.18031 5.19266 5.33277 5.39828 5.41066 5.61293 6.04230 6.28329 6.33534 6.70245 6.85683 7.16153 7.32640 8.89119 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.001980 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.221948 B =14141.174173 C =14334.353828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.405 6.405 3 C 0.106 3.894 4 C -0.173 4.173 5 C -0.179 4.179 6 C -0.092 4.092 7 C 0.026 3.974 8 N -0.478 5.478 9 C 0.060 3.940 10 C -0.138 4.138 11 C -0.095 4.095 12 C -0.182 4.182 13 H 0.139 0.861 14 C 0.550 3.450 15 O -0.588 6.588 16 N -0.638 5.638 17 C 0.116 3.884 18 C -0.017 4.017 19 C -0.515 4.515 20 H 0.038 0.962 21 C 0.019 3.981 22 N -0.945 5.945 23 Si 0.938 3.062 24 H -0.254 1.254 25 H -0.243 1.243 26 H -0.292 1.292 27 C 0.101 3.899 28 C 0.055 3.945 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.139 0.861 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.268 0.732 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.073 0.927 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 24.967 11.359 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.325 6.325 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.237 4.237 6 C -0.129 4.129 7 C -0.103 4.103 8 N -0.201 5.201 9 C -0.069 4.069 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.203 4.203 13 H 0.157 0.843 14 C 0.342 3.658 15 O -0.470 6.470 16 N -0.372 5.372 17 C -0.006 4.006 18 C -0.036 4.036 19 C -0.553 4.553 20 H 0.057 0.943 21 C -0.180 4.180 22 N -0.584 5.584 23 Si 0.762 3.238 24 H -0.178 1.178 25 H -0.166 1.166 26 H -0.218 1.218 27 C -0.021 4.021 28 C -0.074 4.074 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.157 0.843 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.091 0.909 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.852 25.791 11.006 32.716 hybrid contribution -0.171 -1.305 -0.280 1.346 sum -17.023 24.486 10.726 31.692 Atomic orbital electron populations 1.22903 0.80586 1.03168 1.00913 1.87961 1.20756 1.28551 1.95209 1.21620 0.93253 0.83060 0.95396 1.22366 1.02298 1.01255 0.97142 1.22473 1.02226 1.01344 0.97614 1.21472 0.92295 1.02391 0.96774 1.22649 0.88298 0.99842 0.99476 1.68588 1.12082 1.35544 1.03843 1.23180 0.95838 0.93631 0.94206 1.22710 0.94675 0.96991 0.99514 1.22872 0.91507 0.93749 1.05066 1.22149 1.10311 0.92125 0.95741 0.84346 1.19935 0.76389 0.79809 0.89663 1.90612 1.46196 1.66381 1.43761 1.50264 1.50661 1.20485 1.15744 1.23159 0.96952 0.89536 0.90956 1.20989 0.94201 0.95230 0.93210 1.20991 1.08938 0.90786 1.34577 0.94344 1.25895 0.99370 0.96211 0.96500 1.70050 1.29854 1.13326 1.45166 0.85846 0.77695 0.80058 0.80247 1.17807 1.16619 1.21818 1.23771 0.91859 0.90580 0.95918 1.23537 0.95211 0.92891 0.95720 0.89578 0.92713 0.93223 0.90155 0.91446 0.92124 0.92569 0.91499 0.90205 0.91519 0.88800 0.90402 0.95158 0.90282 0.92518 0.84285 0.88771 0.91306 0.90800 0.91497 0.92347 0.89725 0.89556 0.90911 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.21 113.37 1.16 1.42 16 2 O -0.40 -7.49 9.88 -148.98 -1.47 -8.97 16 3 C 0.11 1.51 0.82 -10.79 -0.01 1.50 16 4 C -0.17 -1.82 8.25 71.98 0.59 -1.23 16 5 C -0.18 -2.22 7.76 71.98 0.56 -1.66 16 6 C -0.09 -1.43 4.57 30.60 0.14 -1.29 16 7 C 0.03 0.51 4.22 86.30 0.36 0.88 16 8 N -0.48 -10.45 6.26 -918.37 -5.75 -16.20 16 9 C 0.06 1.60 6.41 86.17 0.55 2.16 16 10 C -0.14 -3.32 3.03 -52.40 -0.16 -3.47 16 11 C -0.09 -2.06 10.24 30.43 0.31 -1.75 16 12 C -0.18 -4.89 5.94 -11.71 -0.07 -4.96 16 13 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 14 C 0.55 19.88 7.84 87.66 0.69 20.57 16 15 O -0.59 -24.63 15.86 -3.03 -0.05 -24.67 16 16 N -0.64 -23.91 3.61 -836.81 -3.02 -26.93 16 17 C 0.12 4.68 8.39 86.48 0.73 5.40 16 18 C -0.02 -0.72 2.90 -10.88 -0.03 -0.75 16 19 C -0.51 -27.09 9.32 25.60 0.24 -26.86 16 20 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 21 C 0.02 1.00 5.47 84.65 0.46 1.47 16 22 N -0.94 -55.71 13.96 21.45 0.30 -55.41 16 23 Si 0.94 39.78 27.17 68.60 1.86 41.65 16 24 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.24 -9.45 6.25 99.48 0.62 -8.83 16 26 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.10 3.68 7.47 86.49 0.65 4.33 16 28 C 0.05 1.08 7.11 86.17 0.61 1.69 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.55 6.42 -2.39 -0.02 0.53 16 31 H 0.05 0.55 6.42 -2.39 -0.02 0.54 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.60 6.54 -2.39 -0.02 0.59 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.84 6.35 -2.39 -0.02 0.82 16 36 H 0.07 0.70 6.54 -2.39 -0.02 0.69 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.09 7.54 -2.39 -0.02 1.08 16 39 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 1.52 6.35 -2.39 -0.02 1.51 16 41 H 0.03 0.72 7.39 -2.39 -0.02 0.70 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.06 1.74 7.66 -2.39 -0.02 1.73 16 44 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.07 3.03 8.09 -2.39 -0.02 3.01 16 48 H 0.07 2.84 6.58 -2.39 -0.02 2.82 16 49 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.08 3.11 8.09 -2.39 -0.02 3.10 16 51 H 0.09 2.71 8.08 -2.39 -0.02 2.69 16 52 H 0.07 1.49 7.79 -2.38 -0.02 1.47 16 53 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -66.47 412.93 -0.55 -67.02 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.79 Total: 26.07 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 6.78 Total: -2.56 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -8.47 Total: -98.54 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.52 Total: -33.64 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.86 Total: 41.65 kcal Total: -66.47 -0.55 -67.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277131306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.107 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds