Wall clock time and date at job start Tue Mar 31 2020 19:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99589 * 2 1 4 4 C 1.52998 * 109.47389 * 60.00753 * 3 2 1 5 5 C 1.52994 * 109.47222 * 299.99821 * 3 2 1 6 6 C 1.53007 * 109.46740 * 180.02562 * 3 2 1 7 7 C 1.53007 * 109.47003 * 59.13221 * 6 3 2 8 8 N 1.46905 * 109.46627 * 183.07773 * 7 6 3 9 9 C 1.48866 * 110.69416 * 56.13610 * 8 7 6 10 10 C 1.54941 * 103.07280 * 159.80839 * 9 8 7 11 11 C 1.54559 * 102.94498 * 322.28562 * 10 9 8 12 12 H 1.08996 * 117.57874 * 242.98091 * 11 10 9 13 13 C 1.52944 * 118.91778 * 85.59318 * 11 10 9 14 14 C 1.47939 * 110.99454 * 173.10818 * 8 7 6 15 15 C 1.50699 * 117.37535 * 354.63652 * 14 8 7 16 16 O 1.21275 * 120.00086 * 114.56404 * 15 14 8 17 17 N 1.34783 * 120.00048 * 294.56395 * 15 14 8 18 18 C 1.47574 * 134.49155 * 183.56393 * 17 15 14 19 19 C 1.53945 * 86.11667 * 204.64309 * 18 17 15 20 20 C 1.50708 * 113.74029 * 221.94302 * 19 18 17 21 21 H 1.07997 * 119.99993 * 353.66951 * 20 19 18 22 22 C 1.37873 * 120.00081 * 173.67089 * 20 19 18 23 23 N 1.31518 * 119.99933 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47217 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47235 * 120.00094 * 24 22 20 27 27 H 1.48498 * 109.47082 * 239.99760 * 24 22 20 28 28 C 1.47581 * 134.49057 * 3.56291 * 17 15 14 29 29 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47048 * 299.99923 * 1 2 3 31 31 H 1.09000 * 109.47490 * 59.99590 * 1 2 3 32 32 H 1.08998 * 109.46839 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46555 * 299.99194 * 4 3 2 34 34 H 1.08987 * 109.47516 * 59.99479 * 4 3 2 35 35 H 1.08997 * 109.47796 * 306.67731 * 5 3 2 36 36 H 1.09005 * 109.46946 * 66.67781 * 5 3 2 37 37 H 1.09004 * 109.47577 * 186.67411 * 5 3 2 38 38 H 1.08999 * 109.46910 * 299.13527 * 6 3 2 39 39 H 1.08998 * 109.46873 * 179.13118 * 6 3 2 40 40 H 1.09000 * 109.46753 * 63.07748 * 7 6 3 41 41 H 1.08997 * 109.46755 * 303.07486 * 7 6 3 42 42 H 1.08997 * 110.95310 * 41.32682 * 9 8 7 43 43 H 1.08997 * 110.66960 * 278.15381 * 9 8 7 44 44 H 1.08993 * 110.71982 * 203.92039 * 10 9 8 45 45 H 1.09003 * 110.71963 * 80.65098 * 10 9 8 46 46 H 1.09003 * 117.45190 * 161.06136 * 13 11 10 47 47 H 1.08991 * 117.45938 * 16.28619 * 13 11 10 48 48 H 1.09002 * 113.77225 * 90.33947 * 18 17 15 49 49 H 1.09000 * 113.87153 * 318.95467 * 18 17 15 50 50 H 1.08992 * 113.74561 * 90.73892 * 19 18 17 51 51 H 0.96999 * 119.99904 * 179.97438 * 23 22 20 52 52 H 1.08997 * 113.76890 * 41.06174 * 28 17 15 53 53 H 1.09000 * 113.76629 * 269.66060 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9849 0.4068 -1.2392 8 7 5.4424 0.2271 -1.2022 9 6 5.8575 -0.4466 0.0588 10 6 7.2570 -1.0124 -0.2904 11 6 7.0895 -1.4695 -1.7573 12 1 7.2052 -2.5320 -1.9712 13 6 7.2948 -0.4491 -2.8780 14 6 5.8950 -0.6603 -2.2959 15 6 4.8333 -1.3073 -3.1475 16 8 4.7390 -1.0193 -4.3218 17 7 3.9886 -2.2061 -2.6042 18 6 2.9075 -3.0604 -3.1325 19 6 2.3383 -3.0446 -1.7023 20 6 1.8284 -4.3844 -1.2373 21 1 1.7894 -5.2158 -1.9255 22 6 1.4116 -4.5487 0.0666 23 7 1.4595 -3.5364 0.9048 24 14 0.7789 -6.2092 0.6427 25 1 0.8267 -7.1752 -0.4841 26 1 1.6293 -6.7042 1.7549 27 1 -0.6217 -6.0683 1.1155 28 6 3.7735 -2.7313 -1.2418 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.0018 3.0606 1.2490 33 1 0.4721 2.1508 1.2493 34 1 1.8804 1.5239 2.1392 35 1 1.7747 1.4677 -2.1352 36 1 0.4868 2.2545 -1.1915 37 1 2.0927 3.0130 -1.3110 38 1 3.8584 0.6571 0.8968 39 1 3.9787 2.1804 -0.0162 40 1 3.7098 0.9616 -2.1362 41 1 3.4987 -0.5686 -1.2518 42 1 5.1697 -1.2524 0.3148 43 1 5.9262 0.2728 0.8747 44 1 7.5021 -1.8584 0.3515 45 1 8.0175 -0.2353 -0.2131 46 1 7.4859 -0.8344 -3.8796 47 1 7.8094 0.4779 -2.6256 48 1 3.2449 -4.0437 -3.4603 49 1 2.2705 -2.5636 -3.8644 50 1 1.6322 -2.2346 -1.5198 51 1 1.1659 -3.6519 1.8220 52 1 3.8288 -1.9700 -0.4637 53 1 4.3653 -3.6178 -1.0142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277131706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:57 Heat of formation + Delta-G solvation = -12.288952 kcal Electronic energy + Delta-G solvation = -32869.013474 eV Core-core repulsion = 28935.974378 eV Total energy + Delta-G solvation = -3933.039096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10672 -40.05513 -39.80202 -38.50603 -35.85640 -34.53155 -33.63594 -31.84821 -30.72631 -29.25836 -28.36784 -27.39441 -27.19228 -26.91285 -24.70989 -23.94143 -22.95826 -21.48900 -21.31653 -20.54066 -19.36153 -18.55967 -18.33846 -17.34303 -17.18547 -16.77694 -16.38822 -16.26717 -15.95732 -15.78771 -15.58969 -15.41968 -14.98679 -14.45845 -14.38317 -14.09105 -13.96461 -13.88096 -13.85906 -13.48488 -13.25676 -13.12213 -13.03552 -12.85741 -12.76888 -12.68619 -12.55289 -12.45327 -12.28377 -12.24747 -12.17614 -12.02925 -11.85455 -11.52586 -11.40965 -11.18684 -11.12189 -10.95553 -10.58778 -10.39713 -10.29656 -9.61021 -9.27213 -8.02834 -6.15662 1.39636 1.45053 1.50137 1.58386 1.84760 2.48277 2.55350 2.80520 3.05041 3.24002 3.37487 3.62875 3.73478 3.84370 3.93846 3.94996 4.13512 4.24652 4.28272 4.32088 4.39444 4.42086 4.45305 4.48540 4.50128 4.59244 4.59376 4.64126 4.68692 4.70915 4.75653 4.77746 4.82911 4.85446 4.88094 4.93472 4.99351 5.01245 5.04301 5.10406 5.14502 5.16557 5.19779 5.28338 5.33640 5.41097 5.68671 5.79498 5.91791 5.93574 6.30481 6.58729 6.82256 6.87422 7.09486 7.51558 9.02440 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.005959 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.141380 B = 4697.381830 C = 6360.745722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.379 6.379 3 C 0.100 3.900 4 C -0.166 4.166 5 C -0.170 4.170 6 C -0.087 4.087 7 C 0.025 3.975 8 N -0.459 5.459 9 C 0.022 3.978 10 C -0.082 4.082 11 C -0.147 4.147 12 H 0.110 0.890 13 C -0.088 4.088 14 C -0.038 4.038 15 C 0.552 3.448 16 O -0.595 6.595 17 N -0.630 5.630 18 C 0.099 3.901 19 C 0.042 3.958 20 C -0.539 4.539 21 H 0.055 0.945 22 C 0.036 3.964 23 N -0.884 5.884 24 Si 0.943 3.057 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.284 1.284 28 C 0.125 3.875 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.042 0.958 51 H 0.260 0.740 52 H 0.075 0.925 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 10.308 3.404 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.298 6.298 3 C 0.060 3.940 4 C -0.223 4.223 5 C -0.228 4.228 6 C -0.124 4.124 7 C -0.103 4.103 8 N -0.183 5.183 9 C -0.105 4.105 10 C -0.119 4.119 11 C -0.167 4.167 12 H 0.128 0.872 13 C -0.126 4.126 14 C -0.131 4.131 15 C 0.341 3.659 16 O -0.476 6.476 17 N -0.363 5.363 18 C -0.023 4.023 19 C 0.023 3.977 20 C -0.578 4.578 21 H 0.074 0.926 22 C -0.167 4.167 23 N -0.520 5.520 24 Si 0.770 3.230 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.210 1.210 28 C 0.004 3.996 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.144 0.856 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.093 0.907 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.123 11.010 2.869 13.424 hybrid contribution -1.464 -1.717 0.008 2.256 sum 5.659 9.294 2.877 11.255 Atomic orbital electron populations 1.22584 0.81604 1.01694 0.99632 1.88210 1.19663 1.27003 1.94897 1.21634 0.93439 0.83853 0.95080 1.22302 1.02056 1.01054 0.96934 1.22383 1.02155 1.00870 0.97362 1.21509 0.92655 1.01320 0.96944 1.22605 0.87530 1.01559 0.98593 1.64968 1.13124 1.39892 1.00352 1.23864 0.96113 0.97644 0.92857 1.22139 0.96473 1.01729 0.91592 1.23931 0.99275 0.98011 0.95461 0.87206 1.23176 0.91495 1.00762 0.97161 1.22765 0.89356 1.01368 0.99641 1.19935 0.80523 0.78804 0.86600 1.90581 1.73039 1.65339 1.18678 1.50534 1.33816 1.38402 1.13502 1.23465 0.86480 0.92673 0.99651 1.20269 0.91921 0.96959 0.88564 1.21138 1.44518 0.95805 0.96306 0.92640 1.25526 0.95215 0.99038 0.96910 1.70122 1.46146 1.30850 1.04862 0.85749 0.77887 0.81245 0.78122 1.19774 1.20810 1.21022 1.23540 0.98021 0.95709 0.82357 0.91903 0.93036 0.94109 0.89749 0.91804 0.92429 0.94423 0.91623 0.90022 0.91419 0.88619 0.93385 0.91918 0.94313 0.87574 0.88861 0.88170 0.88108 0.85634 0.90196 0.92552 0.93963 0.93058 0.90706 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.21 113.37 1.16 2.53 16 2 O -0.38 -14.12 9.54 -148.98 -1.42 -15.54 16 3 C 0.10 2.86 0.82 -10.79 -0.01 2.85 16 4 C -0.17 -3.78 8.25 71.98 0.59 -3.19 16 5 C -0.17 -4.53 7.51 71.98 0.54 -3.99 16 6 C -0.09 -2.46 4.31 30.60 0.13 -2.33 16 7 C 0.03 0.86 3.45 86.30 0.30 1.16 16 8 N -0.46 -14.21 5.37 -837.14 -4.49 -18.70 16 9 C 0.02 0.59 5.16 86.59 0.45 1.03 16 10 C -0.08 -1.79 6.87 31.79 0.22 -1.57 16 11 C -0.15 -3.94 6.89 -9.94 -0.07 -4.01 16 12 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 13 C -0.09 -2.36 9.96 30.60 0.30 -2.06 16 14 C -0.04 -1.28 2.57 2.94 0.01 -1.27 16 15 C 0.55 23.36 6.15 87.66 0.54 23.90 16 16 O -0.59 -28.86 17.72 -3.01 -0.05 -28.91 16 17 N -0.63 -26.99 2.89 -836.87 -2.42 -29.41 16 18 C 0.10 4.39 8.39 86.48 0.73 5.11 16 19 C 0.04 2.01 3.57 -10.88 -0.04 1.97 16 20 C -0.54 -27.52 8.78 25.60 0.22 -27.29 16 21 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 22 C 0.04 1.82 5.46 84.65 0.46 2.28 16 23 N -0.88 -45.91 13.29 21.45 0.28 -45.63 16 24 Si 0.94 40.67 29.54 68.60 2.03 42.70 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.13 5.46 6.90 86.48 0.60 6.06 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 1.45 6.42 -2.38 -0.02 1.44 16 31 H 0.04 1.22 6.57 -2.39 -0.02 1.21 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.37 6.54 -2.38 -0.02 1.36 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.20 6.89 -2.39 -0.02 1.18 16 36 H 0.06 1.58 6.91 -2.38 -0.02 1.56 16 37 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 1.97 6.66 -2.39 -0.02 1.96 16 39 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.83 6.72 -2.39 -0.02 1.81 16 41 H 0.06 2.55 2.79 -2.39 -0.01 2.55 16 42 H 0.04 1.26 5.43 -2.39 -0.01 1.25 16 43 H 0.11 2.40 7.57 -2.39 -0.02 2.38 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 47 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.08 3.38 8.09 -2.39 -0.02 3.36 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.04 2.26 8.10 -2.39 -0.02 2.24 16 51 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 52 H 0.07 3.33 3.87 -2.39 -0.01 3.32 16 53 H 0.06 2.79 8.09 -2.39 -0.02 2.77 16 Total: -1.00 -61.77 401.26 0.95 -60.81 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.90 Total: 33.50 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.13 Total: 1.18 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -6.63 Total: -93.74 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.47 Total: -44.45 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -61.77 0.95 -60.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277131706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.521 kcal (2) G-P(sol) polarization free energy of solvation -61.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds