Wall clock time and date at job start Tue Mar 31 2020 21:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.50694 * 109.47281 * 120.00498 * 2 1 3 5 5 O 1.21279 * 120.00264 * 119.99994 * 4 2 1 6 6 N 1.34776 * 119.99852 * 299.99368 * 4 2 1 7 7 C 1.46502 * 120.00243 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.47239 * 180.02562 * 7 6 4 9 9 C 1.29454 * 117.69285 * 95.00461 * 8 7 6 10 10 C 1.50315 * 123.65240 * 180.85530 * 9 8 7 11 11 N 1.47010 * 109.16453 * 349.02830 * 10 9 8 12 12 C 1.36940 * 121.37147 * 222.92274 * 11 10 9 13 13 H 1.07999 * 119.99704 * 155.97976 * 12 11 10 14 14 C 1.38814 * 119.99888 * 335.98036 * 12 11 10 15 15 N 1.31621 * 120.00311 * 344.52319 * 14 12 11 16 16 Si 1.86804 * 119.99913 * 164.53198 * 14 12 11 17 17 H 1.48496 * 109.46976 * 59.99532 * 16 14 12 18 18 H 1.48495 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46764 * 299.99501 * 16 14 12 20 20 C 1.47331 * 117.25189 * 42.94141 * 11 10 9 21 21 C 1.49970 * 117.69529 * 274.74592 * 8 7 6 22 22 C 1.53003 * 109.47117 * 240.00446 * 2 1 3 23 23 H 1.08993 * 109.48165 * 180.02562 * 22 2 1 24 24 C 1.53096 * 109.48134 * 59.97213 * 22 2 1 25 25 C 1.53183 * 109.16099 * 182.42184 * 24 22 2 26 26 C 1.53176 * 109.04370 * 56.96508 * 25 24 22 27 27 C 1.53094 * 109.16762 * 303.02600 * 26 25 24 28 28 O 1.42903 * 109.41261 * 57.60637 * 27 26 25 29 29 H 1.09003 * 109.46923 * 299.99953 * 1 2 3 30 30 H 1.08999 * 109.47003 * 59.99580 * 1 2 3 31 31 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46878 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46802 * 300.00378 * 3 2 1 34 34 H 1.08996 * 109.46778 * 60.00247 * 3 2 1 35 35 H 0.97009 * 120.00052 * 0.02562 * 6 4 2 36 36 H 1.09004 * 109.46713 * 60.00823 * 7 6 4 37 37 H 1.08993 * 109.47361 * 300.00602 * 7 6 4 38 38 H 1.08000 * 118.17338 * 0.83708 * 9 8 7 39 39 H 1.09009 * 109.51810 * 108.92633 * 10 9 8 40 40 H 1.08993 * 109.52652 * 229.11369 * 10 9 8 41 41 H 0.96995 * 120.00541 * 179.97438 * 15 14 12 42 42 H 1.09008 * 109.77775 * 57.81488 * 20 11 10 43 43 H 1.08996 * 109.77956 * 178.56187 * 20 11 10 44 44 H 1.09005 * 109.31065 * 281.28826 * 21 8 7 45 45 H 1.09001 * 109.31599 * 40.71276 * 21 8 7 46 46 H 1.08993 * 109.52323 * 302.31446 * 24 22 2 47 47 H 1.08994 * 109.51714 * 62.50960 * 24 22 2 48 48 H 1.09001 * 109.53130 * 297.10069 * 25 24 22 49 49 H 1.08997 * 109.61465 * 176.87771 * 25 24 22 50 50 H 1.09005 * 109.52143 * 183.11721 * 26 25 24 51 51 H 1.09001 * 109.52212 * 62.93191 * 26 25 24 52 52 H 1.09006 * 109.47785 * 297.62510 * 27 26 25 53 53 H 1.08996 * 109.49075 * 177.60199 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7069 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6506 8 6 1.6921 -0.2308 4.8812 9 6 0.6061 -0.6732 5.4297 10 6 -0.0232 -0.0561 6.6473 11 7 0.9118 0.9147 7.2343 12 6 1.1092 0.9858 8.5876 13 1 2.0301 1.3930 8.9782 14 6 0.1258 0.5346 9.4571 15 7 -1.0969 0.3261 9.0168 16 14 0.5377 0.2233 11.2524 17 1 1.0174 1.4828 11.8757 18 1 -0.6768 -0.2494 11.9642 19 1 1.5998 -0.8105 11.3445 20 6 1.6272 1.8081 6.3067 21 6 2.4884 0.9348 5.3874 22 6 2.0400 -0.7212 -1.2493 23 1 3.1299 -0.7217 -1.2493 24 6 1.5292 0.0000 -2.4994 25 6 1.9934 -0.7621 -3.7445 26 6 1.4926 -2.2073 -3.6614 27 6 2.0048 -2.8432 -2.3664 28 8 1.5633 -2.0684 -1.2498 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1489 0.5385 2.5435 36 1 3.2848 -0.9414 3.6508 37 1 1.8310 -1.9685 3.6505 38 1 0.1253 -1.5333 4.9876 39 1 -0.9449 0.4518 6.3632 40 1 -0.2454 -0.8349 7.3768 41 1 -1.7840 0.0105 9.6243 42 1 0.9096 2.3770 5.7153 43 1 2.2644 2.4904 6.8694 44 1 3.3536 0.5677 5.9395 45 1 2.8306 1.5320 4.5422 46 1 0.4401 0.0362 -2.4797 47 1 1.9280 1.0141 -2.5233 48 1 3.0824 -0.7557 -3.7908 49 1 1.5875 -0.2864 -4.6372 50 1 1.8650 -2.7716 -4.5165 51 1 0.4026 -2.2159 -3.6650 52 1 3.0944 -2.8710 -2.3815 53 1 1.6165 -3.8580 -2.2812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279563911.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:21 Heat of formation + Delta-G solvation = -79.304530 kcal Electronic energy + Delta-G solvation = -30241.879570 eV Core-core repulsion = 26305.934460 eV Total energy + Delta-G solvation = -3935.945110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60371 -40.01509 -39.22579 -36.40699 -36.35021 -34.46001 -34.44403 -32.59354 -31.43945 -30.80557 -28.53343 -28.30120 -26.15968 -25.90088 -25.10265 -24.38609 -23.24973 -22.59309 -21.21022 -20.22398 -19.46953 -18.25252 -17.41531 -17.31383 -17.09410 -16.97558 -16.55470 -16.12855 -15.85936 -15.56472 -15.41594 -15.32072 -15.22344 -14.99040 -14.59468 -14.52656 -13.98427 -13.81212 -13.76881 -13.54849 -13.34420 -13.26762 -13.20469 -12.96331 -12.88868 -12.77323 -12.58685 -12.54317 -12.25893 -12.15550 -12.07929 -11.99016 -11.82111 -11.70886 -11.44273 -11.26637 -11.15468 -10.73789 -10.65881 -10.25087 -10.03918 -9.63707 -8.74904 -7.88211 -5.29433 1.18672 1.46893 1.49717 1.55941 1.72117 2.43101 2.51294 2.83240 3.28753 3.61460 3.62797 3.65289 3.87451 3.94638 3.96450 3.99576 4.05298 4.09560 4.16571 4.30493 4.36332 4.43741 4.53660 4.62247 4.64306 4.67484 4.73327 4.75332 4.80460 4.84274 4.88967 4.92068 4.94305 4.96818 5.01120 5.08971 5.10631 5.11844 5.20172 5.21603 5.30371 5.34730 5.38123 5.45940 5.46787 5.47924 5.61385 5.77068 6.16249 6.34014 6.40064 6.62087 7.13514 7.31129 7.83758 8.37481 9.20161 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002121 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.015687 B =13195.999770 C =13359.729329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.141 4.141 4 C 0.517 3.483 5 O -0.575 6.575 6 N -0.713 5.713 7 C 0.169 3.831 8 C -0.137 4.137 9 C -0.144 4.144 10 C 0.206 3.794 11 N -0.615 5.615 12 C -0.257 4.257 13 H 0.070 0.930 14 C -0.055 4.055 15 N -0.939 5.939 16 Si 0.968 3.032 17 H -0.274 1.274 18 H -0.295 1.295 19 H -0.281 1.281 20 C 0.139 3.861 21 C -0.083 4.083 22 C 0.114 3.886 23 H 0.042 0.958 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.151 4.151 27 C 0.055 3.945 28 O -0.391 6.391 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.069 0.931 52 H 0.041 0.959 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 1.736 -27.835 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 C -0.198 4.198 4 C 0.305 3.695 5 O -0.453 6.453 6 N -0.365 5.365 7 C 0.045 3.955 8 C -0.137 4.137 9 C -0.164 4.164 10 C 0.081 3.919 11 N -0.340 5.340 12 C -0.387 4.387 13 H 0.088 0.912 14 C -0.250 4.250 15 N -0.586 5.586 16 Si 0.796 3.204 17 H -0.200 1.200 18 H -0.221 1.221 19 H -0.208 1.208 20 C 0.014 3.986 21 C -0.122 4.122 22 C 0.056 3.944 23 H 0.060 0.940 24 C -0.186 4.186 25 C -0.160 4.160 26 C -0.189 4.189 27 C -0.021 4.021 28 O -0.310 6.310 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.088 0.912 52 H 0.059 0.941 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.405 0.920 -27.648 28.186 hybrid contribution -0.171 -0.328 1.318 1.369 sum 5.234 0.592 -26.330 26.852 Atomic orbital electron populations 1.21853 0.90970 1.02447 1.04023 1.20892 0.98724 0.97016 0.90648 1.21963 1.01619 0.91184 1.05070 1.21044 0.79337 0.83947 0.85195 1.90673 1.39685 1.27770 1.87220 1.46033 1.53534 1.32239 1.04653 1.20169 0.98622 0.94588 0.82109 1.20606 0.97012 0.99422 0.96683 1.22934 0.96940 0.99061 0.97475 1.19383 0.90147 0.91518 0.90819 1.44407 1.49472 1.37847 1.02226 1.19477 0.98947 1.37763 0.82529 0.91182 1.25744 0.94671 1.02702 1.01852 1.70154 1.01295 1.51286 1.35825 0.85332 0.76535 0.78279 0.80269 1.19970 1.22075 1.20767 1.21179 0.94041 0.91825 0.91546 1.20723 0.97462 0.94941 0.99037 1.21827 0.96546 0.82322 0.93696 0.93984 1.22349 1.02628 1.00274 0.93380 1.21613 1.00990 0.95084 0.98300 1.22172 1.01794 0.97200 0.97730 1.22639 0.98227 0.95216 0.86046 1.87955 1.73737 1.23255 1.46062 0.91303 0.88982 0.93445 0.92247 0.88428 0.90391 0.75373 0.91632 0.92845 0.87399 0.96688 0.92623 0.94123 0.95168 0.92183 0.91945 0.89247 0.90049 0.88676 0.91979 0.89691 0.89606 0.91180 0.94078 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.88 71.98 0.57 -1.68 16 2 C -0.07 -1.31 0.48 -52.93 -0.03 -1.34 16 3 C -0.14 -1.78 8.02 71.98 0.58 -1.20 16 4 C 0.52 14.00 6.33 87.66 0.56 14.56 16 5 O -0.57 -20.61 15.28 14.42 0.22 -20.39 16 6 N -0.71 -17.82 5.33 -466.79 -2.49 -20.31 16 7 C 0.17 4.97 5.66 85.63 0.48 5.45 16 8 C -0.14 -4.49 5.22 -15.14 -0.08 -4.57 16 9 C -0.14 -5.46 9.47 27.10 0.26 -5.21 16 10 C 0.21 10.00 5.22 85.42 0.45 10.44 16 11 N -0.62 -30.70 3.01 -703.05 -2.11 -32.82 16 12 C -0.26 -14.12 9.71 84.03 0.82 -13.31 16 13 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 14 C -0.05 -3.07 5.01 84.86 0.43 -2.64 16 15 N -0.94 -55.43 11.08 21.65 0.24 -55.19 16 16 Si 0.97 45.13 29.58 68.60 2.03 47.16 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 C 0.14 5.47 6.59 86.31 0.57 6.04 16 21 C -0.08 -2.66 5.95 29.71 0.18 -2.48 16 22 C 0.11 2.26 1.45 30.63 0.04 2.31 16 23 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 24 C -0.15 -1.85 4.70 30.69 0.14 -1.70 16 25 C -0.12 -1.37 6.03 30.71 0.19 -1.19 16 26 C -0.15 -1.96 6.14 30.68 0.19 -1.77 16 27 C 0.06 1.06 6.84 72.01 0.49 1.55 16 28 O -0.39 -9.77 8.63 -131.54 -1.14 -10.91 16 29 H 0.07 1.04 7.56 -2.39 -0.02 1.02 16 30 H 0.09 1.08 6.38 -2.39 -0.02 1.06 16 31 H 0.05 1.01 7.68 -2.39 -0.02 0.99 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.75 6.49 -2.39 -0.02 0.74 16 34 H 0.08 0.87 7.56 -2.39 -0.02 0.86 16 35 H 0.41 8.59 7.30 -92.70 -0.68 7.91 16 36 H 0.07 1.96 8.11 -2.38 -0.02 1.94 16 37 H 0.05 1.72 7.78 -2.39 -0.02 1.70 16 38 H 0.11 3.77 7.73 -2.91 -0.02 3.75 16 39 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.06 3.07 6.41 -2.39 -0.02 3.06 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 44 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 0.96 6.31 -2.39 -0.02 0.94 16 47 H 0.09 0.81 6.57 -2.39 -0.02 0.80 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 53 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.06 402.63 2.78 -68.28 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.21 Total: 20.91 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.82 Total: 3.25 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.36 Total: -108.31 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.91 Total: -31.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.06 2.78 -68.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279563911.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.023 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds