Wall clock time and date at job start Tue Mar 31 2020 21:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47266 * 2 1 4 4 C 1.52990 * 109.47436 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47076 * 305.00085 * 4 3 2 6 6 C 1.53004 * 109.47429 * 64.99713 * 4 3 2 7 7 C 1.52990 * 109.47429 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47483 * 300.00580 * 7 6 4 9 9 C 1.52996 * 109.46890 * 59.99567 * 8 7 6 10 10 C 1.52995 * 109.47464 * 185.00478 * 4 3 2 11 11 H 1.09003 * 109.46653 * 299.99866 * 10 4 3 12 12 N 1.46495 * 109.47367 * 59.99336 * 10 4 3 13 13 C 1.34777 * 120.00025 * 205.00072 * 12 10 4 14 14 O 1.21349 * 120.00176 * 0.02562 * 13 12 10 15 15 C 1.49449 * 119.99491 * 180.02562 * 13 12 10 16 16 O 1.21348 * 120.00408 * 355.00947 * 15 13 12 17 17 N 1.34778 * 119.99670 * 175.00625 * 15 13 12 18 18 C 1.46503 * 120.00179 * 185.77639 * 17 15 13 19 19 C 1.52996 * 109.47410 * 183.69603 * 18 17 15 20 20 C 1.50702 * 115.55125 * 306.42245 * 19 18 17 21 21 H 1.08003 * 120.00450 * 145.10888 * 20 19 18 22 22 C 1.37874 * 119.99777 * 325.10610 * 20 19 18 23 23 N 1.31515 * 120.00079 * 349.44093 * 22 20 19 24 24 Si 1.86801 * 120.00345 * 169.44193 * 22 20 19 25 25 H 1.48499 * 109.47154 * 89.99828 * 24 22 20 26 26 H 1.48495 * 109.47373 * 210.00178 * 24 22 20 27 27 H 1.48498 * 109.46709 * 330.00377 * 24 22 20 28 28 C 1.52996 * 117.50009 * 160.74732 * 19 18 17 29 29 C 1.52997 * 117.49770 * 92.08591 * 19 18 17 30 30 H 1.08997 * 109.46881 * 59.99825 * 1 2 3 31 31 H 1.08998 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47132 * 299.99688 * 1 2 3 33 33 H 1.08998 * 109.47132 * 240.00312 * 2 1 3 34 34 H 1.08997 * 109.46881 * 120.00175 * 2 1 3 35 35 H 1.08999 * 109.46757 * 300.00668 * 3 2 1 36 36 H 1.09007 * 109.46772 * 59.99879 * 3 2 1 37 37 H 1.09001 * 109.47104 * 300.00506 * 6 4 3 38 38 H 1.09003 * 109.46687 * 60.00134 * 6 4 3 39 39 H 1.09006 * 109.47359 * 180.02562 * 7 6 4 40 40 H 1.09003 * 109.47076 * 60.00372 * 7 6 4 41 41 H 1.09003 * 109.46795 * 299.99965 * 8 7 6 42 42 H 1.08998 * 109.47193 * 180.02562 * 8 7 6 43 43 H 1.09001 * 109.46732 * 180.02562 * 9 8 7 44 44 H 1.09003 * 109.47077 * 60.00570 * 9 8 7 45 45 H 0.96999 * 120.00050 * 25.00891 * 12 10 4 46 46 H 0.97001 * 120.00175 * 5.78242 * 17 15 13 47 47 H 1.08998 * 109.47503 * 303.70180 * 18 17 15 48 48 H 1.09003 * 109.46643 * 63.69949 * 18 17 15 49 49 H 0.96999 * 119.99970 * 185.03347 * 23 22 20 50 50 H 1.09003 * 117.50216 * 0.02562 * 28 19 18 51 51 H 1.09005 * 117.50222 * 145.02161 * 28 19 18 52 52 H 1.09005 * 117.50348 * 214.98125 * 29 19 18 53 53 H 1.09000 * 117.50386 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 5.6094 0.8326 -1.3086 8 6 6.1201 2.2693 -1.1825 9 6 5.6106 2.8787 0.1251 10 6 4.0801 2.8795 0.1252 11 1 3.7164 3.4691 -0.7164 12 7 3.5922 3.4630 1.3772 13 6 3.4636 4.7997 1.4926 14 8 3.7515 5.5198 0.5593 15 6 2.9664 5.3949 2.7701 16 8 2.5930 4.6728 3.6711 17 7 2.9329 6.7337 2.9216 18 6 2.5665 7.3157 4.2152 19 6 2.5161 8.8399 4.0928 20 6 3.7570 9.4887 3.5359 21 1 3.6738 10.3642 2.9089 22 6 4.9987 8.9647 3.8267 23 7 5.1204 8.0345 4.7485 24 14 6.5082 9.5758 2.9117 25 1 7.0976 10.7266 3.6420 26 1 7.5086 8.4822 2.8210 27 1 6.1182 10.0046 1.5445 28 6 1.7353 9.6089 5.1605 29 6 1.1691 9.4764 3.7445 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.7161 -0.1907 -1.3978 38 1 3.7158 1.4227 -2.1499 39 1 5.9725 0.3987 -2.2405 40 1 5.9728 0.2427 -0.4671 41 1 5.7567 2.8592 -2.0241 42 1 7.2101 2.2689 -1.1833 43 1 5.9740 3.9024 0.2147 44 1 5.9739 2.2888 0.9666 45 1 3.3618 2.8874 2.1232 46 1 3.1512 7.3120 2.1740 47 1 1.5879 6.9428 4.5173 48 1 3.3087 7.0356 4.9628 49 1 6.0007 7.7180 5.0048 50 1 1.2578 9.0289 5.9503 51 1 2.1189 10.5842 5.4599 52 1 1.1805 10.3647 3.1128 53 1 0.3189 8.8093 3.6020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323158997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:43 Heat of formation + Delta-G solvation = -99.365143 kcal Electronic energy + Delta-G solvation = -30335.811335 eV Core-core repulsion = 26398.996332 eV Total energy + Delta-G solvation = -3936.815003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.78829 -40.34696 -39.15207 -38.43923 -35.82718 -35.60795 -34.65593 -34.15339 -31.73913 -30.73598 -28.48828 -27.52269 -26.93489 -25.06642 -23.65590 -22.96902 -22.45274 -21.56946 -21.35119 -21.24361 -20.69342 -19.44595 -18.13555 -17.85063 -16.95985 -16.89505 -16.60476 -16.31078 -16.11684 -15.77123 -15.42022 -15.31965 -14.97900 -14.92392 -14.61474 -14.39374 -14.09913 -14.06656 -13.77281 -13.63178 -13.46326 -13.37401 -12.92466 -12.82641 -12.72111 -12.67692 -12.33863 -12.31687 -12.18705 -12.06558 -11.97810 -11.86257 -11.56171 -11.44621 -11.40247 -11.26454 -11.12652 -11.00212 -10.70130 -10.55020 -10.18577 -10.16021 -9.83388 -8.08076 -6.21692 0.44615 1.37025 1.43320 1.45846 1.50418 2.25377 2.37882 2.76275 3.03545 3.48977 3.56360 3.67968 3.71367 3.87066 4.07825 4.18435 4.20933 4.24806 4.33356 4.35295 4.42970 4.48819 4.51078 4.54505 4.69402 4.71293 4.74708 4.78442 4.84697 4.96109 4.98930 5.01633 5.03069 5.06100 5.09603 5.19228 5.21532 5.24782 5.25916 5.30692 5.34535 5.38617 5.44075 5.46116 5.52354 5.55196 5.57420 5.59211 5.87372 6.06529 6.33658 6.53384 6.78210 6.86150 7.10217 7.41043 8.86972 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.003189 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.269143 B = 8778.515039 C =10390.411369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.117 4.117 4 C -0.084 4.084 5 H 0.087 0.913 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.113 4.113 9 C -0.131 4.131 10 C 0.148 3.852 11 H 0.075 0.925 12 N -0.683 5.683 13 C 0.512 3.488 14 O -0.545 6.545 15 C 0.490 3.510 16 O -0.562 6.562 17 N -0.655 5.655 18 C 0.170 3.830 19 C 0.005 3.995 20 C -0.509 4.509 21 H 0.057 0.943 22 C 0.041 3.959 23 N -0.891 5.891 24 Si 0.939 3.061 25 H -0.275 1.275 26 H -0.290 1.290 27 H -0.269 1.269 28 C -0.190 4.190 29 C -0.188 4.188 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.416 0.584 46 H 0.410 0.590 47 H 0.039 0.961 48 H 0.084 0.916 49 H 0.260 0.740 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.082 0.918 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -18.533 -11.782 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.103 4.103 5 H 0.105 0.895 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.170 4.170 10 C 0.045 3.955 11 H 0.093 0.907 12 N -0.335 5.335 13 C 0.293 3.707 14 O -0.423 6.423 15 C 0.271 3.729 16 O -0.443 6.443 17 N -0.303 5.303 18 C 0.047 3.953 19 C 0.004 3.996 20 C -0.546 4.546 21 H 0.075 0.925 22 C -0.162 4.162 23 N -0.528 5.528 24 Si 0.765 3.235 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.193 1.193 28 C -0.228 4.228 29 C -0.226 4.226 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.253 0.747 46 H 0.245 0.755 47 H 0.057 0.943 48 H 0.102 0.898 49 H 0.070 0.930 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.101 0.899 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.562 -18.663 -11.756 22.205 hybrid contribution 0.889 1.012 0.111 1.352 sum -1.672 -17.651 -11.644 21.212 Atomic orbital electron populations 1.21797 0.96189 1.01908 1.01424 1.21538 0.95598 0.95671 1.02808 1.21669 0.94238 0.97908 1.01690 1.21422 0.95543 0.92715 1.00615 0.89514 1.21598 0.95492 1.01858 0.95540 1.21566 0.95414 0.95498 1.02934 1.21485 1.00796 0.97050 0.95804 1.21936 0.94607 1.00455 0.99952 1.21294 0.94013 0.95175 0.85049 0.90678 1.45831 1.64434 1.05175 1.18099 1.20149 0.78782 0.84191 0.87595 1.90722 1.49971 1.61062 1.40521 1.20287 0.80562 0.83830 0.88243 1.90652 1.49614 1.60735 1.43342 1.45686 1.63908 1.05280 1.15448 1.20914 0.97824 0.92182 0.84341 1.19212 0.90574 0.90133 0.99646 1.20702 0.90062 1.12752 1.31094 0.92459 1.25477 1.00938 0.94643 0.95099 1.69951 1.23649 1.29591 1.29637 0.85833 0.79993 0.77832 0.79817 1.20059 1.21599 1.19314 1.22931 1.06035 1.02104 0.91740 1.22981 0.97878 1.03177 0.98531 0.92945 0.91894 0.93683 0.90463 0.91640 0.92354 0.93142 0.89275 0.91826 0.90313 0.91243 0.92161 0.91156 0.94359 0.91022 0.74685 0.75450 0.94273 0.89806 0.93026 0.90133 0.90463 0.89906 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.55 5.69 30.60 0.17 -1.37 16 3 C -0.12 -1.96 4.60 30.59 0.14 -1.82 16 4 C -0.08 -1.34 1.76 -10.80 -0.02 -1.36 16 5 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.11 -1.31 4.96 30.59 0.15 -1.16 16 7 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 8 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 9 C -0.13 -2.99 5.50 30.61 0.17 -2.82 16 10 C 0.15 3.42 1.90 45.01 0.09 3.50 16 11 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 12 N -0.68 -19.39 4.30 -443.80 -1.91 -21.29 16 13 C 0.51 19.07 7.85 87.27 0.69 19.75 16 14 O -0.55 -22.62 16.15 -3.24 -0.05 -22.67 16 15 C 0.49 20.81 7.88 87.27 0.69 21.50 16 16 O -0.56 -25.02 16.48 -3.24 -0.05 -25.08 16 17 N -0.66 -29.63 5.27 -464.41 -2.45 -32.08 16 18 C 0.17 8.06 4.75 86.38 0.41 8.47 16 19 C 0.01 0.24 2.00 -52.93 -0.11 0.13 16 20 C -0.51 -26.33 8.27 25.60 0.21 -26.11 16 21 H 0.06 2.97 7.84 -2.91 -0.02 2.94 16 22 C 0.04 2.12 5.13 84.65 0.43 2.55 16 23 N -0.89 -48.45 10.75 21.45 0.23 -48.22 16 24 Si 0.94 42.72 29.55 68.60 2.03 44.75 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 C -0.19 -8.07 9.96 30.62 0.30 -7.76 16 29 C -0.19 -7.60 9.92 30.62 0.30 -7.30 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.80 6.56 -2.39 -0.02 0.79 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.02 7.31 -2.38 -0.02 1.01 16 37 H 0.09 0.80 6.56 -2.39 -0.02 0.79 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.42 10.84 7.88 -92.71 -0.73 10.11 16 46 H 0.41 18.96 7.41 -92.71 -0.69 18.27 16 47 H 0.04 1.77 8.06 -2.39 -0.02 1.75 16 48 H 0.08 4.51 6.04 -2.39 -0.01 4.50 16 49 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 50 H 0.08 3.18 8.14 -2.39 -0.02 3.17 16 51 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 52 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 53 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -59.99 417.71 1.99 -58.00 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.52 Total: 44.84 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 4.71 Total: 1.74 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.12 Total: -101.59 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.11 Total: -47.75 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -59.99 1.99 -58.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323158997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.361 kcal (2) G-P(sol) polarization free energy of solvation -59.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds