Wall clock time and date at job start Tue Mar 31 2020 21:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47409 * 2 1 4 4 C 1.52994 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47283 * 54.99954 * 4 3 2 6 6 C 1.52998 * 109.47241 * 294.99677 * 4 3 2 7 7 C 1.53006 * 109.47374 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46776 * 60.00424 * 7 6 4 9 9 C 1.53006 * 109.46976 * 300.00013 * 8 7 6 10 10 C 1.53003 * 109.47071 * 60.00165 * 9 8 7 11 11 H 1.08997 * 109.47457 * 59.99914 * 10 9 8 12 12 N 1.46496 * 109.46948 * 179.97438 * 10 9 8 13 13 C 1.34773 * 120.00267 * 274.99954 * 12 10 9 14 14 O 1.21354 * 119.99669 * 359.97438 * 13 12 10 15 15 C 1.49446 * 120.00438 * 179.97438 * 13 12 10 16 16 O 1.21354 * 119.99989 * 5.13105 * 15 13 12 17 17 N 1.34780 * 120.00444 * 185.12571 * 15 13 12 18 18 C 1.46501 * 120.00093 * 174.86996 * 17 15 13 19 19 C 1.53007 * 109.46872 * 185.10447 * 18 17 15 20 20 C 1.50701 * 115.56034 * 270.33568 * 19 18 17 21 21 H 1.07997 * 119.99311 * 142.63996 * 20 19 18 22 22 C 1.37871 * 120.00554 * 322.64546 * 20 19 18 23 23 N 1.31521 * 119.99412 * 343.28189 * 22 20 19 24 24 Si 1.86794 * 120.00407 * 163.28205 * 22 20 19 25 25 H 1.48499 * 109.46902 * 59.99992 * 24 22 20 26 26 H 1.48501 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47223 * 299.99723 * 24 22 20 28 28 C 1.52997 * 117.49519 * 124.64892 * 19 18 17 29 29 C 1.52998 * 117.49542 * 56.02617 * 19 18 17 30 30 H 1.08994 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46618 * 300.00361 * 1 2 3 32 32 H 1.09001 * 109.46794 * 59.99860 * 1 2 3 33 33 H 1.08996 * 109.46991 * 239.99759 * 2 1 3 34 34 H 1.09001 * 109.46794 * 120.00140 * 2 1 3 35 35 H 1.08996 * 109.47241 * 59.99912 * 3 2 1 36 36 H 1.09001 * 109.47257 * 299.99857 * 3 2 1 37 37 H 1.09008 * 109.47029 * 60.00273 * 6 4 3 38 38 H 1.08997 * 109.47208 * 300.00323 * 6 4 3 39 39 H 1.08997 * 109.47459 * 300.00466 * 7 6 4 40 40 H 1.09003 * 109.47102 * 179.97438 * 7 6 4 41 41 H 1.08997 * 109.47078 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47092 * 59.99817 * 8 7 6 43 43 H 1.08997 * 109.47050 * 299.99830 * 9 8 7 44 44 H 1.09001 * 109.46819 * 180.02562 * 9 8 7 45 45 H 0.97005 * 120.00066 * 94.99789 * 12 10 9 46 46 H 0.97003 * 119.99332 * 354.86908 * 17 15 13 47 47 H 1.08995 * 109.46954 * 65.10823 * 18 17 15 48 48 H 1.08997 * 109.47226 * 305.10346 * 18 17 15 49 49 H 0.97004 * 119.99379 * 185.01771 * 23 22 20 50 50 H 1.09002 * 117.50278 * 0.02562 * 28 19 18 51 51 H 1.08998 * 117.49734 * 145.01881 * 28 19 18 52 52 H 1.09003 * 117.49749 * 214.97350 * 29 19 18 53 53 H 1.09000 * 117.50012 * 0.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0806 0.8326 1.3064 7 6 5.6107 0.8320 1.3055 8 6 6.1212 2.2688 1.1795 9 6 5.6106 2.8786 -0.1276 10 6 4.0805 2.8792 -0.1266 11 1 3.7179 3.4688 0.7154 12 7 3.5917 3.4637 -1.3779 13 6 3.4634 4.8004 -1.4924 14 8 3.7524 5.5198 -0.5588 15 6 2.9653 5.3967 -2.7690 16 8 2.5884 4.6754 -3.6692 17 7 2.9346 6.7356 -2.9206 18 6 2.5534 7.3182 -4.2096 19 6 2.7216 8.8379 -4.1520 20 6 1.5139 9.6085 -3.6843 21 1 1.6387 10.4808 -3.0599 22 6 0.2500 9.2000 -4.0534 23 7 0.0962 8.3631 -5.0563 24 14 -1.2440 9.8349 -3.1292 25 1 -1.2999 11.3150 -3.2362 26 1 -2.4756 9.2497 -3.7175 27 1 -1.1443 9.4453 -1.6998 28 6 3.6090 9.4911 -5.2135 29 6 4.0991 9.3821 -3.7682 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6769 1.9563 -0.8900 37 1 3.7173 -0.1912 1.3960 38 1 3.7176 1.4219 2.1484 39 1 5.9733 0.2424 0.4635 40 1 5.9744 0.3980 2.2369 41 1 7.2111 2.2684 1.1793 42 1 5.7585 2.8584 2.0215 43 1 5.9732 2.2891 -0.9696 44 1 5.9746 3.9021 -0.2175 45 1 3.3604 2.8886 -2.1240 46 1 3.1648 7.3133 -2.1762 47 1 1.5127 7.0758 -4.4244 48 1 3.1907 6.9117 -4.9948 49 1 -0.7947 8.1322 -5.3629 50 1 4.0725 8.8384 -5.9532 51 1 3.3192 10.4783 -5.5736 52 1 4.1319 10.2976 -3.1775 53 1 4.8856 8.6575 -3.5572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323159000.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:53 Heat of formation + Delta-G solvation = -98.972956 kcal Electronic energy + Delta-G solvation = -30017.564212 eV Core-core repulsion = 26080.766216 eV Total energy + Delta-G solvation = -3936.797997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83892 -40.39978 -39.18531 -38.50533 -35.84110 -35.61931 -34.66048 -34.27536 -31.73800 -30.73681 -28.57650 -27.54284 -26.93707 -25.09642 -23.68437 -23.05755 -22.44524 -21.58866 -21.34755 -21.21872 -20.76621 -19.53081 -18.09649 -17.89903 -17.02575 -16.92344 -16.65589 -16.29923 -16.11712 -15.75246 -15.65040 -15.24254 -15.11671 -14.87178 -14.66255 -14.36838 -14.11171 -14.06763 -13.75686 -13.62902 -13.50055 -13.38607 -12.89183 -12.84286 -12.75164 -12.73014 -12.34802 -12.30912 -12.18298 -12.10920 -11.98202 -11.85471 -11.56513 -11.45869 -11.39484 -11.26956 -11.16600 -11.00476 -10.69673 -10.61991 -10.23207 -10.15969 -9.88947 -8.15602 -6.22071 0.38338 1.38904 1.39959 1.44433 1.50386 2.17419 2.38272 2.69863 2.96578 3.44972 3.53067 3.64258 3.71736 3.87221 4.09137 4.17078 4.20205 4.24993 4.32748 4.35423 4.43277 4.47638 4.52626 4.55688 4.61457 4.70849 4.76160 4.77267 4.85571 4.91877 4.98285 5.01015 5.02173 5.04392 5.09156 5.19887 5.21521 5.23165 5.24870 5.30329 5.34850 5.38908 5.39582 5.44060 5.51268 5.52533 5.56868 5.59166 5.91843 6.01695 6.33595 6.45425 6.72986 6.82248 7.02518 7.38114 8.85378 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.002857 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.169866 B = 9798.356003 C =11096.123627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.084 4.084 5 H 0.089 0.911 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.128 4.128 10 C 0.147 3.853 11 H 0.074 0.926 12 N -0.682 5.682 13 C 0.516 3.484 14 O -0.541 6.541 15 C 0.490 3.510 16 O -0.557 6.557 17 N -0.674 5.674 18 C 0.154 3.846 19 C 0.008 3.992 20 C -0.511 4.511 21 H 0.060 0.940 22 C 0.028 3.972 23 N -0.897 5.897 24 Si 0.948 3.052 25 H -0.269 1.269 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.191 4.191 29 C -0.181 4.181 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.416 0.584 46 H 0.411 0.589 47 H 0.092 0.908 48 H 0.038 0.962 49 H 0.265 0.735 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.086 0.914 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -19.225 12.827 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.157 4.157 4 C -0.103 4.103 5 H 0.107 0.893 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.166 4.166 10 C 0.044 3.956 11 H 0.092 0.908 12 N -0.335 5.335 13 C 0.296 3.704 14 O -0.419 6.419 15 C 0.271 3.729 16 O -0.437 6.437 17 N -0.324 5.324 18 C 0.031 3.969 19 C 0.007 3.993 20 C -0.548 4.548 21 H 0.078 0.922 22 C -0.173 4.173 23 N -0.534 5.534 24 Si 0.774 3.226 25 H -0.194 1.194 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.229 4.229 29 C -0.219 4.219 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.253 0.747 46 H 0.247 0.753 47 H 0.110 0.890 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.104 0.896 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.763 -19.348 12.770 24.784 hybrid contribution -1.013 0.941 -0.160 1.392 sum 7.750 -18.408 12.610 23.620 Atomic orbital electron populations 1.21809 0.96446 1.01894 1.01304 1.21533 0.95385 0.95750 1.02875 1.21681 0.94658 0.97831 1.01531 1.21424 0.95163 0.93070 1.00675 0.89317 1.21599 0.95749 1.01728 0.95498 1.21570 0.95132 0.95861 1.02919 1.21488 1.00940 0.96765 0.95974 1.21908 0.93924 1.00908 0.99883 1.21310 0.94483 0.94902 0.84941 0.90796 1.45853 1.64223 1.05185 1.18195 1.19984 0.78827 0.84222 0.87359 1.90728 1.49914 1.61055 1.40187 1.20450 0.80379 0.83707 0.88378 1.90700 1.48710 1.60831 1.43459 1.46001 1.64630 1.05702 1.16066 1.21141 1.02020 0.92317 0.81402 1.19166 0.89675 0.90430 1.00017 1.20766 0.90143 1.12162 1.31760 0.92179 1.25638 1.01485 0.95173 0.94968 1.69924 1.23469 1.35319 1.24724 0.85761 0.78794 0.78818 0.79260 1.19387 1.21050 1.19930 1.22970 1.06416 1.01947 0.91577 1.22882 0.98168 1.02725 0.98102 0.91834 0.93058 0.93898 0.91518 0.90375 0.92548 0.93356 0.89532 0.91991 0.91133 0.90487 0.90819 0.92261 0.90750 0.93525 0.74667 0.75290 0.89000 0.94329 0.92577 0.90464 0.90561 0.89550 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -1.58 5.69 30.60 0.17 -1.40 16 3 C -0.12 -2.00 4.60 30.59 0.14 -1.86 16 4 C -0.08 -1.23 1.77 -10.80 -0.02 -1.25 16 5 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 6 C -0.11 -1.19 4.96 30.60 0.15 -1.04 16 7 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 8 C -0.11 -1.58 5.92 30.60 0.18 -1.39 16 9 C -0.13 -2.37 5.49 30.60 0.17 -2.20 16 10 C 0.15 3.00 1.90 44.99 0.09 3.09 16 11 H 0.07 1.80 7.57 -2.39 -0.02 1.79 16 12 N -0.68 -17.43 4.30 -443.87 -1.91 -19.33 16 13 C 0.52 17.35 7.85 87.27 0.69 18.04 16 14 O -0.54 -20.07 16.15 -3.26 -0.05 -20.12 16 15 C 0.49 19.53 7.88 87.27 0.69 20.22 16 16 O -0.56 -24.32 16.50 -3.26 -0.05 -24.37 16 17 N -0.67 -28.54 5.40 -464.40 -2.51 -31.05 16 18 C 0.15 7.38 5.43 86.38 0.47 7.85 16 19 C 0.01 0.38 1.83 -52.93 -0.10 0.28 16 20 C -0.51 -27.04 9.00 25.60 0.23 -26.80 16 21 H 0.06 3.14 7.87 -2.91 -0.02 3.12 16 22 C 0.03 1.52 5.07 84.65 0.43 1.95 16 23 N -0.90 -50.13 11.01 21.45 0.24 -49.90 16 24 Si 0.95 42.71 29.57 68.60 2.03 44.74 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 C -0.19 -8.31 9.88 30.59 0.30 -8.01 16 29 C -0.18 -7.32 9.54 30.59 0.29 -7.02 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.82 6.57 -2.39 -0.02 0.80 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.00 7.30 -2.39 -0.02 0.99 16 37 H 0.09 0.72 6.57 -2.38 -0.02 0.71 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.42 9.84 7.88 -92.70 -0.73 9.11 16 46 H 0.41 16.77 7.73 -92.71 -0.72 16.05 16 47 H 0.09 5.10 5.28 -2.39 -0.01 5.09 16 48 H 0.04 1.84 7.88 -2.39 -0.02 1.82 16 49 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 50 H 0.08 3.17 8.03 -2.39 -0.02 3.15 16 51 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 52 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 53 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.54 418.16 1.97 -59.57 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.55 Total: 42.71 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.78 Total: -2.24 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -4.18 Total: -100.28 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.11 Total: -44.49 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.54 1.97 -59.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323159000.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.405 kcal (2) G-P(sol) polarization free energy of solvation -61.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds