Wall clock time and date at job start Tue Mar 31 2020 20:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47120 * 119.99811 * 2 1 4 4 C 1.50695 * 119.99994 * 4.94212 * 3 2 1 5 5 C 1.32874 * 119.99898 * 184.93662 * 3 2 1 6 6 C 1.50700 * 119.99927 * 358.89641 * 5 3 2 7 7 C 1.50700 * 109.46593 * 126.29934 * 6 5 3 8 8 O 1.21278 * 120.00512 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99599 * 179.97438 * 7 6 5 10 10 C 1.46925 * 120.63220 * 359.72465 * 9 7 6 11 11 C 1.52760 * 109.00731 * 233.58149 * 10 9 7 12 12 C 1.53042 * 109.38249 * 305.58713 * 11 10 9 13 13 N 1.46503 * 109.45037 * 181.25450 * 12 11 10 14 14 C 1.36941 * 119.99696 * 297.88566 * 13 12 11 15 15 H 1.07994 * 120.00012 * 326.64010 * 14 13 12 16 16 C 1.38812 * 120.00098 * 146.64496 * 14 13 12 17 17 N 1.31625 * 119.99821 * 336.77888 * 16 14 13 18 18 Si 1.86798 * 120.00401 * 156.78361 * 16 14 13 19 19 H 1.48504 * 109.46891 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47271 * 119.99713 * 18 16 14 21 21 H 1.48501 * 109.46993 * 239.99788 * 18 16 14 22 22 C 1.46496 * 120.00581 * 117.88315 * 13 12 11 23 23 C 1.53001 * 109.47134 * 89.99970 * 22 13 12 24 24 O 1.42891 * 109.47142 * 65.00564 * 23 22 13 25 25 C 1.42900 * 114.00224 * 179.97438 * 24 23 22 26 26 C 1.53038 * 109.53943 * 61.24101 * 12 11 10 27 27 C 1.46932 * 120.63106 * 180.02562 * 9 7 6 28 28 H 1.07998 * 119.99342 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00244 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46891 * 269.99404 * 4 3 2 32 32 H 1.08992 * 109.47525 * 29.99448 * 4 3 2 33 33 H 1.09001 * 109.47511 * 150.00350 * 4 3 2 34 34 H 1.07995 * 119.99963 * 178.89857 * 5 3 2 35 35 H 1.08993 * 109.47110 * 246.29700 * 6 5 3 36 36 H 1.08999 * 109.47080 * 6.30687 * 6 5 3 37 37 H 1.08996 * 109.58707 * 353.41537 * 10 9 7 38 38 H 1.09005 * 109.58863 * 113.84546 * 10 9 7 39 39 H 1.08998 * 109.56512 * 185.55450 * 11 10 9 40 40 H 1.09001 * 109.39118 * 65.51021 * 11 10 9 41 41 H 1.08997 * 109.46198 * 301.21568 * 12 11 10 42 42 H 0.97001 * 119.99962 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.47764 * 210.00633 * 22 13 12 44 44 H 1.09007 * 109.46623 * 330.00415 * 22 13 12 45 45 H 1.09003 * 109.47120 * 185.00460 * 23 22 13 46 46 H 1.08996 * 109.47035 * 304.99963 * 23 22 13 47 47 H 1.08996 * 109.46912 * 300.00063 * 25 24 23 48 48 H 1.09000 * 109.47020 * 59.99737 * 25 24 23 49 49 H 1.08999 * 109.47324 * 179.97438 * 25 24 23 50 50 H 1.09005 * 109.50117 * 178.68344 * 26 12 11 51 51 H 1.09003 * 109.52628 * 58.60503 * 26 12 11 52 52 H 1.09002 * 109.58990 * 246.16034 * 27 9 7 53 53 H 1.09006 * 109.58399 * 6.43874 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3149 2.5767 0.1124 5 6 3.3893 1.2763 -0.0990 6 6 4.1405 -0.0272 -0.1863 7 6 5.0320 -0.0128 -1.4012 8 8 5.0547 0.9599 -2.1252 9 7 5.8040 -1.0809 -1.6832 10 6 5.7918 -2.2642 -0.8124 11 6 7.2248 -2.5895 -0.3950 12 6 8.0967 -2.7368 -1.6441 13 7 9.4648 -3.0783 -1.2466 14 6 10.1925 -2.2077 -0.4799 15 1 10.0567 -1.1427 -0.5960 16 6 11.1048 -2.6942 0.4463 17 7 10.9700 -3.9128 0.9252 18 14 12.5236 -1.6196 1.0132 19 1 12.4515 -0.3033 0.3294 20 1 12.4374 -1.4202 2.4823 21 1 13.8102 -2.2811 0.6780 22 6 10.0544 -4.3511 -1.6693 23 6 10.7643 -4.1635 -3.0116 24 8 11.8686 -3.2719 -2.8459 25 6 12.6039 -3.0279 -4.0466 26 6 8.1055 -1.4181 -2.4206 27 6 6.6788 -1.0816 -2.8638 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8687 -0.9353 0.0004 31 1 1.0577 2.9351 -0.8844 32 1 0.4033 2.4229 0.6897 33 1 1.9419 3.3146 0.6131 34 1 3.9279 2.2122 -0.1169 35 1 4.7485 -0.1568 0.7090 36 1 3.4310 -0.8508 -0.2661 37 1 5.1920 -2.0592 0.0743 38 1 5.3705 -3.1117 -1.3532 39 1 7.2378 -3.5217 0.1697 40 1 7.6129 -1.7823 0.2263 41 1 7.6942 -3.5280 -2.2766 42 1 11.6077 -4.2529 1.5722 43 1 10.7737 -4.6845 -0.9213 44 1 9.2679 -5.0983 -1.7755 45 1 11.1262 -5.1275 -3.3691 46 1 10.0658 -3.7460 -3.7367 47 1 13.0040 -3.9685 -4.4251 48 1 11.9439 -2.5870 -4.7936 49 1 13.4246 -2.3418 -3.8371 50 1 8.7453 -1.5165 -3.2976 51 1 8.4851 -0.6213 -1.7810 52 1 6.3313 -1.8304 -3.5757 53 1 6.6619 -0.0972 -3.3316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323749495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:45 Heat of formation + Delta-G solvation = -39.005604 kcal Electronic energy + Delta-G solvation = -30213.681165 eV Core-core repulsion = 26279.483548 eV Total energy + Delta-G solvation = -3934.197617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.22620 -39.25967 -38.37676 -37.72511 -36.50705 -33.87313 -33.09153 -32.18829 -31.92308 -30.69549 -29.71807 -27.16930 -26.93125 -26.04397 -24.57240 -23.97695 -22.77833 -22.28848 -21.49023 -20.03219 -18.46847 -18.42615 -17.94714 -17.29058 -16.88001 -16.77137 -16.63277 -16.52605 -16.04666 -15.67021 -15.50790 -15.31954 -15.15903 -14.91917 -14.56772 -14.35951 -14.08731 -13.76458 -13.47885 -13.42700 -13.36983 -13.19939 -13.09650 -12.91112 -12.86564 -12.73048 -12.54803 -12.43669 -12.31642 -12.21450 -12.02129 -11.77008 -11.54101 -11.49916 -11.46917 -11.31392 -11.09837 -10.76974 -10.38811 -10.28725 -9.59759 -9.11421 -8.46468 -7.69714 -5.21989 0.47188 1.43607 1.49269 1.55920 1.64369 2.01190 2.27649 2.59288 3.23843 3.40378 3.60336 3.68009 3.74594 3.98983 4.02853 4.16380 4.19345 4.28732 4.38152 4.43293 4.44629 4.47844 4.53714 4.58667 4.63906 4.66872 4.69425 4.72335 4.78407 4.80975 4.82612 4.84690 4.87934 4.92847 4.94670 4.96309 5.04362 5.15558 5.17586 5.22092 5.47918 5.51965 5.60522 5.64163 5.71016 5.79134 5.84194 5.93346 6.06033 6.48115 6.51861 6.71225 7.20045 7.31232 8.03267 8.48479 9.26392 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.002675 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.082990 B =10465.664427 C =11001.925036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.142 4.142 6 C -0.110 4.110 7 C 0.512 3.488 8 O -0.590 6.590 9 N -0.607 5.607 10 C 0.114 3.886 11 C -0.128 4.128 12 C 0.173 3.827 13 N -0.584 5.584 14 C -0.214 4.214 15 H 0.039 0.961 16 C -0.026 4.026 17 N -0.914 5.914 18 Si 0.933 3.067 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.297 1.297 22 C 0.133 3.867 23 C 0.055 3.945 24 O -0.397 6.397 25 C 0.026 3.974 26 C -0.124 4.124 27 C 0.121 3.879 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.245 0.755 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.038 0.962 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.032 0.968 52 H 0.086 0.914 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.689 1.555 -5.045 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.107 4.107 4 C -0.174 4.174 5 C -0.161 4.161 6 C -0.149 4.149 7 C 0.302 3.698 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.008 4.008 11 C -0.168 4.168 12 C 0.066 3.934 13 N -0.303 5.303 14 C -0.345 4.345 15 H 0.057 0.943 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.764 3.236 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.224 1.224 22 C 0.007 3.993 23 C -0.024 4.024 24 O -0.316 6.316 25 C -0.070 4.070 26 C -0.164 4.164 27 C -0.002 4.002 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.051 0.949 52 H 0.104 0.896 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.533 2.049 -5.132 18.384 hybrid contribution 1.710 0.555 0.113 1.802 sum -15.823 2.604 -5.019 16.803 Atomic orbital electron populations 1.24664 0.95322 1.03177 0.97524 1.22105 0.96012 0.96148 1.02357 1.20830 0.93585 0.95663 1.00620 1.20836 1.00533 0.93593 1.02418 1.22769 0.94588 0.97427 1.01297 1.20916 0.98640 0.99174 0.96138 1.21160 0.80271 0.81388 0.86958 1.90635 1.68794 1.34778 1.52876 1.48279 1.41627 1.16981 1.27059 1.21883 0.97021 0.87159 0.94732 1.22092 0.94537 1.01096 0.99045 1.20522 0.84824 0.94354 0.93686 1.43939 1.09881 1.18739 1.57717 1.18726 1.16251 0.88247 1.11298 0.94339 1.25239 1.02463 0.97302 0.97228 1.70027 1.36452 1.18326 1.31220 0.85748 0.81863 0.79221 0.76728 1.20710 1.22415 1.22382 1.21098 0.96837 0.87486 0.93879 1.23279 0.87885 0.91275 0.99925 1.88147 1.44125 1.67025 1.32314 1.22795 0.96035 1.00387 0.87830 1.22133 0.95305 0.99183 0.99798 1.21516 0.88936 1.02349 0.87404 0.86487 0.87480 0.85640 0.91345 0.90161 0.91567 0.87938 0.86703 0.85621 0.87739 0.88927 0.91746 0.94444 0.91201 0.94560 0.90788 0.92528 0.93762 0.94383 0.93517 0.93950 0.90354 0.92041 0.94889 0.89584 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 14.07 66.64 0.94 -1.25 16 2 C -0.15 -2.42 9.30 23.43 0.22 -2.21 16 3 C -0.11 -2.10 5.98 -18.71 -0.11 -2.21 16 4 C -0.12 -1.87 9.39 71.23 0.67 -1.20 16 5 C -0.14 -3.31 8.44 24.51 0.21 -3.10 16 6 C -0.11 -2.38 4.31 29.10 0.13 -2.26 16 7 C 0.51 15.18 7.69 87.66 0.67 15.86 16 8 O -0.59 -22.16 15.45 -3.02 -0.05 -22.21 16 9 N -0.61 -16.94 2.98 -819.81 -2.44 -19.39 16 10 C 0.11 2.69 6.31 86.22 0.54 3.23 16 11 C -0.13 -4.29 5.32 30.53 0.16 -4.13 16 12 C 0.17 6.28 2.59 45.02 0.12 6.39 16 13 N -0.58 -26.57 2.37 -677.89 -1.61 -28.18 16 14 C -0.21 -11.37 7.84 84.03 0.66 -10.71 16 15 H 0.04 2.17 6.78 -2.91 -0.02 2.15 16 16 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 17 N -0.91 -52.04 11.29 21.65 0.24 -51.79 16 18 Si 0.93 46.69 29.61 68.60 2.03 48.72 16 19 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 22 C 0.13 5.83 5.68 86.38 0.49 6.32 16 23 C 0.05 2.09 6.28 71.98 0.45 2.54 16 24 O -0.40 -17.10 10.18 -148.98 -1.52 -18.62 16 25 C 0.03 0.83 11.01 113.37 1.25 2.08 16 26 C -0.12 -4.39 5.26 30.65 0.16 -4.23 16 27 C 0.12 3.58 6.43 86.35 0.56 4.13 16 28 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.11 1.21 6.29 -2.91 -0.02 1.19 16 30 H 0.13 1.76 5.80 -2.91 -0.02 1.75 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 1.00 6.64 -2.39 -0.02 0.98 16 33 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 34 H 0.10 2.67 8.05 -2.91 -0.02 2.64 16 35 H 0.12 2.26 7.68 -2.39 -0.02 2.24 16 36 H 0.13 2.06 5.07 -2.39 -0.01 2.04 16 37 H 0.10 1.92 5.93 -2.39 -0.01 1.90 16 38 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.50 7.75 -2.39 -0.02 1.49 16 41 H 0.07 2.24 7.81 -2.39 -0.02 2.23 16 42 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 43 H 0.07 3.89 5.28 -2.39 -0.01 3.87 16 44 H 0.06 2.20 7.94 -2.38 -0.02 2.18 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.03 1.38 6.96 -2.39 -0.02 1.37 16 52 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 53 H 0.07 2.30 7.00 -2.38 -0.02 2.28 16 Total: -1.00 -69.67 414.94 5.06 -64.61 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.87 Total: 18.63 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 7.53 Total: 8.23 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.81 Total: -99.36 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.56 Total: -40.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -69.67 5.06 -64.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323749495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.603 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds