Wall clock time and date at job start Tue Mar 31 2020 19:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46813 * 2 1 4 4 C 1.52995 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47247 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.42998 * 54.30365 * 5 4 3 7 7 C 1.54883 * 110.48869 * 291.76307 * 5 4 3 8 8 C 1.54893 * 102.75123 * 203.37604 * 7 5 4 9 9 C 1.54276 * 104.19257 * 37.94014 * 8 7 5 10 10 C 1.54089 * 106.61946 * 336.28068 * 9 8 7 11 11 H 1.09003 * 110.16014 * 240.87828 * 10 9 8 12 12 N 1.46498 * 110.00095 * 119.38440 * 10 9 8 13 13 C 1.34778 * 119.99988 * 87.97804 * 12 10 9 14 14 O 1.21344 * 120.00075 * 359.97438 * 13 12 10 15 15 C 1.49455 * 119.99816 * 179.97438 * 13 12 10 16 16 O 1.21344 * 120.00121 * 354.95092 * 15 13 12 17 17 N 1.34777 * 119.99664 * 174.94528 * 15 13 12 18 18 C 1.46504 * 119.99842 * 185.06516 * 17 15 13 19 19 C 1.52995 * 109.47142 * 185.01020 * 18 17 15 20 20 C 1.50705 * 115.55104 * 269.60644 * 19 18 17 21 21 H 1.07997 * 119.99815 * 95.24691 * 20 19 18 22 22 C 1.37876 * 120.00019 * 275.25017 * 20 19 18 23 23 N 1.31521 * 119.99967 * 5.14423 * 22 20 19 24 24 Si 1.86796 * 120.00021 * 185.14605 * 22 20 19 25 25 H 1.48505 * 109.47087 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47340 * 119.99706 * 24 22 20 27 27 H 1.48504 * 109.47050 * 240.00072 * 24 22 20 28 28 C 1.53001 * 117.50056 * 123.89782 * 19 18 17 29 29 C 1.53000 * 60.00086 * 252.51151 * 28 19 18 30 30 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46891 * 59.99975 * 1 2 3 32 32 H 1.08997 * 109.47441 * 299.99713 * 1 2 3 33 33 H 1.08989 * 109.47049 * 119.99733 * 2 1 3 34 34 H 1.09002 * 109.47092 * 240.00607 * 2 1 3 35 35 H 1.08999 * 109.46912 * 300.00259 * 3 2 1 36 36 H 1.08997 * 109.46882 * 59.99945 * 3 2 1 37 37 H 1.09002 * 109.47457 * 300.00429 * 4 3 2 38 38 H 1.09001 * 109.46985 * 59.99896 * 4 3 2 39 39 H 1.09006 * 110.75643 * 321.68846 * 7 5 4 40 40 H 1.09002 * 110.76000 * 84.87621 * 7 5 4 41 41 H 1.08995 * 110.48978 * 156.61851 * 8 7 5 42 42 H 1.09002 * 110.48676 * 279.13548 * 8 7 5 43 43 H 1.09001 * 110.02792 * 95.67525 * 9 8 7 44 44 H 1.08998 * 110.03084 * 217.06084 * 9 8 7 45 45 H 0.97007 * 119.99873 * 267.96557 * 12 10 9 46 46 H 0.96991 * 120.00462 * 5.06562 * 17 15 13 47 47 H 1.09002 * 109.46948 * 305.01325 * 18 17 15 48 48 H 1.09003 * 109.46737 * 65.00723 * 18 17 15 49 49 H 0.96996 * 119.99640 * 185.00127 * 23 22 20 50 50 H 1.09006 * 117.49765 * 359.97438 * 28 19 18 51 51 H 1.08999 * 117.49635 * 145.01592 * 28 19 18 52 52 H 1.09000 * 117.49557 * 252.50990 * 29 28 19 53 53 H 1.08996 * 117.52044 * 107.48035 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6445 3.4430 0.8291 7 6 3.7540 3.5747 -1.3480 8 6 4.8095 4.7062 -1.4171 9 6 6.0844 4.0711 -0.8243 10 6 5.6202 2.9132 0.0803 11 1 5.9374 3.0892 1.1082 12 7 6.1713 1.6458 -0.4056 13 6 7.3835 1.2329 0.0147 14 8 8.0186 1.9112 0.7951 15 6 7.9455 -0.0604 -0.4806 16 8 7.2741 -0.7824 -1.1879 17 7 9.1980 -0.4246 -0.1416 18 6 9.7892 -1.6361 -0.7153 19 6 11.1566 -1.8879 -0.0769 20 6 12.3291 -1.2550 -0.7810 21 1 12.7006 -0.2948 -0.4549 22 6 12.9275 -1.9018 -1.8414 23 7 12.4141 -3.0210 -2.3035 24 14 14.4675 -1.1886 -2.6218 25 1 14.8400 0.0678 -1.9232 26 1 15.5788 -2.1670 -2.5079 27 1 14.2076 -0.8992 -4.0550 28 6 11.3835 -3.2434 0.5956 29 6 11.2169 -1.9844 1.4489 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 0.8899 34 1 1.8934 -0.5137 -0.8901 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9330 0.9289 0.8908 38 1 3.9336 0.9286 -0.8891 39 1 3.8787 2.8791 -2.1779 40 1 2.7441 3.9848 -1.3380 41 1 4.9787 5.0076 -2.4508 42 1 4.4928 5.5604 -0.8186 43 1 6.7186 3.6902 -1.6248 44 1 6.6295 4.8083 -0.2350 45 1 5.6637 1.1037 -1.0296 46 1 9.7081 0.1153 0.4822 47 1 9.1354 -2.4864 -0.5212 48 1 9.9085 -1.5077 -1.7911 49 1 12.8741 -3.5141 -3.0006 50 1 10.5584 -3.9556 0.5835 51 1 12.3810 -3.6777 0.5286 52 1 12.1048 -1.5905 1.9434 53 1 10.2825 -1.8681 1.9979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324123499.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:39 Heat of formation + Delta-G solvation = -95.997467 kcal Electronic energy + Delta-G solvation = -29526.185683 eV Core-core repulsion = 25589.516714 eV Total energy + Delta-G solvation = -3936.668970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.85579 -40.34530 -39.07549 -38.50663 -36.29241 -35.36216 -34.40875 -33.95012 -32.25935 -29.40497 -28.47645 -28.04385 -27.34237 -24.87465 -24.07347 -23.02978 -22.20095 -21.41635 -21.33282 -21.22879 -20.39245 -19.59537 -18.02602 -17.93072 -16.97667 -16.81270 -16.60037 -16.54699 -16.25966 -16.00488 -15.75923 -15.34950 -15.27090 -14.77092 -14.65298 -14.50383 -14.36620 -13.79169 -13.70822 -13.47113 -13.38593 -13.01245 -12.98841 -12.84351 -12.81420 -12.57073 -12.37790 -12.36076 -12.10420 -12.06189 -11.95846 -11.70610 -11.54135 -11.52594 -11.46197 -11.23055 -11.20817 -10.91495 -10.74339 -10.49720 -10.27047 -10.11153 -10.04323 -8.13969 -6.26673 0.36344 1.36439 1.40293 1.43632 1.53393 2.15853 2.41539 2.68658 3.15210 3.36893 3.47586 3.56748 3.62755 3.76551 4.11794 4.15833 4.16968 4.25796 4.37418 4.44964 4.50992 4.54434 4.55691 4.56335 4.59371 4.69418 4.69893 4.76045 4.87544 4.89566 4.94783 4.96345 4.98118 5.03565 5.06868 5.16272 5.23088 5.23652 5.25685 5.27550 5.30664 5.34966 5.42751 5.48582 5.51039 5.55679 5.57082 5.61949 5.74841 6.00115 6.34022 6.42698 6.75323 6.82349 6.98497 7.43244 8.94522 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002433 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.466044 B =11506.608204 C =12480.974855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.088 4.088 6 H 0.105 0.895 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.136 3.864 11 H 0.085 0.915 12 N -0.680 5.680 13 C 0.514 3.486 14 O -0.540 6.540 15 C 0.494 3.506 16 O -0.555 6.555 17 N -0.675 5.675 18 C 0.177 3.823 19 C 0.000 4.000 20 C -0.509 4.509 21 H 0.056 0.944 22 C 0.026 3.974 23 N -0.904 5.904 24 Si 0.948 3.052 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.285 1.285 28 C -0.151 4.151 29 C -0.178 4.178 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.416 0.584 46 H 0.414 0.586 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.261 0.739 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.086 0.914 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.541 13.062 4.452 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.153 4.153 5 C -0.107 4.107 6 H 0.124 0.876 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.176 4.176 10 C 0.033 3.967 11 H 0.103 0.897 12 N -0.335 5.335 13 C 0.294 3.706 14 O -0.418 6.418 15 C 0.275 3.725 16 O -0.435 6.435 17 N -0.326 5.326 18 C 0.054 3.946 19 C -0.001 4.001 20 C -0.547 4.547 21 H 0.075 0.925 22 C -0.175 4.175 23 N -0.541 5.541 24 Si 0.774 3.226 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.211 1.211 28 C -0.189 4.189 29 C -0.216 4.216 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.104 0.896 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.554 12.929 4.306 26.351 hybrid contribution 1.390 -0.316 -0.681 1.580 sum -21.164 12.613 3.625 24.902 Atomic orbital electron populations 1.21759 0.95248 1.01687 1.02116 1.21577 0.96427 0.97357 1.01542 1.21555 0.93861 0.96467 1.02835 1.21597 0.96581 0.95562 1.01526 1.22301 0.91138 0.97018 1.00208 0.87650 1.22613 0.99737 0.97090 0.95936 1.22334 0.93612 0.98318 1.01282 1.22643 0.99011 0.97149 0.98815 1.22008 0.94616 0.81545 0.98574 0.89714 1.46042 1.16972 1.23763 1.46682 1.19990 0.83074 0.85744 0.81793 1.90732 1.59659 1.56451 1.34939 1.20473 0.82997 0.87269 0.81780 1.90703 1.59609 1.54428 1.38730 1.45954 1.13938 1.27262 1.45396 1.20901 0.92800 0.84207 0.96674 1.19089 0.92137 0.98413 0.90452 1.20740 1.14179 1.05392 1.14382 0.92536 1.25664 0.99732 0.95633 0.96438 1.70115 1.38665 1.16846 1.28503 0.85657 0.80069 0.78745 0.78085 1.19185 1.20499 1.21139 1.22477 1.00347 0.90924 1.05112 1.22975 1.01749 1.02820 0.94025 0.92990 0.92311 0.92357 0.92828 0.92693 0.90893 0.91266 0.92758 0.92474 0.91739 0.89258 0.91196 0.89990 0.92829 0.91079 0.74500 0.74914 0.93403 0.93834 0.92983 0.90676 0.91557 0.89563 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.78 5.93 30.60 0.18 -1.60 16 3 C -0.11 -1.26 5.08 30.60 0.16 -1.11 16 4 C -0.11 -1.64 3.82 30.59 0.12 -1.53 16 5 C -0.09 -1.13 2.83 -9.72 -0.03 -1.15 16 6 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 7 C -0.12 -1.27 5.59 31.88 0.18 -1.09 16 8 C -0.12 -1.44 6.83 31.67 0.22 -1.23 16 9 C -0.14 -2.48 6.60 31.40 0.21 -2.28 16 10 C 0.14 2.59 3.13 45.79 0.14 2.73 16 11 H 0.08 1.81 7.57 -2.39 -0.02 1.79 16 12 N -0.68 -16.42 4.34 -440.09 -1.91 -18.33 16 13 C 0.51 16.27 7.88 87.27 0.69 16.96 16 14 O -0.54 -18.94 16.14 -3.23 -0.05 -19.00 16 15 C 0.49 18.37 7.88 87.27 0.69 19.06 16 16 O -0.56 -22.61 16.47 -3.23 -0.05 -22.66 16 17 N -0.68 -26.65 5.40 -464.40 -2.51 -29.15 16 18 C 0.18 8.11 5.71 86.38 0.49 8.60 16 19 C 0.00 0.00 1.46 -52.93 -0.08 -0.08 16 20 C -0.51 -26.89 8.77 25.60 0.22 -26.67 16 21 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 22 C 0.03 1.41 5.40 84.65 0.46 1.87 16 23 N -0.90 -50.76 12.91 21.45 0.28 -50.49 16 24 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 28 C -0.15 -6.79 9.38 30.59 0.29 -6.50 16 29 C -0.18 -7.18 9.50 30.60 0.29 -6.89 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.72 7.46 -2.39 -0.02 0.70 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.92 6.34 -2.39 -0.02 0.90 16 39 H 0.06 0.80 8.00 -2.38 -0.02 0.78 16 40 H 0.09 0.68 8.02 -2.39 -0.02 0.67 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 1.17 7.92 -2.39 -0.02 1.15 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.42 9.49 6.00 -92.70 -0.56 8.94 16 46 H 0.41 15.70 7.70 -92.71 -0.71 14.98 16 47 H 0.05 2.18 7.83 -2.39 -0.02 2.16 16 48 H 0.04 2.27 8.04 -2.39 -0.02 2.25 16 49 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 50 H 0.07 3.20 8.03 -2.38 -0.02 3.18 16 51 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 52 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 53 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.55 424.84 2.34 -59.21 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.38 Total: 37.46 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 4.94 Total: -1.92 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -4.14 Total: -97.97 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.11 Total: -41.66 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -61.55 2.34 -59.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324123499.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.786 kcal (2) G-P(sol) polarization free energy of solvation -61.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds