Wall clock time and date at job start Tue Mar 31 2020 19:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47675 * 2 1 4 4 C 1.52991 * 109.47651 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47517 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.54304 * 307.61699 * 5 4 3 7 7 C 1.54891 * 110.48660 * 70.22689 * 5 4 3 8 8 C 1.54888 * 102.75146 * 156.62171 * 7 5 4 9 9 C 1.54263 * 104.19728 * 322.05923 * 8 7 5 10 10 C 1.53875 * 106.59554 * 23.60817 * 9 8 7 11 11 H 1.08999 * 110.02917 * 119.33660 * 10 9 8 12 12 N 1.46504 * 110.03407 * 240.71367 * 10 9 8 13 13 C 1.34775 * 120.00341 * 273.55064 * 12 10 9 14 14 O 1.21346 * 119.99895 * 359.97438 * 13 12 10 15 15 C 1.49447 * 120.00293 * 179.97438 * 13 12 10 16 16 O 1.21350 * 119.99860 * 355.20754 * 15 13 12 17 17 N 1.34775 * 120.00387 * 175.48549 * 15 13 12 18 18 C 1.46500 * 120.00169 * 184.52005 * 17 15 13 19 19 C 1.53001 * 109.47008 * 185.01890 * 18 17 15 20 20 C 1.50699 * 115.55516 * 55.27489 * 19 18 17 21 21 H 1.08000 * 120.00071 * 273.98548 * 20 19 18 22 22 C 1.37877 * 119.99928 * 93.97653 * 20 19 18 23 23 N 1.31511 * 120.00121 * 4.70892 * 22 20 19 24 24 Si 1.86801 * 119.99878 * 184.70535 * 22 20 19 25 25 H 1.48494 * 109.47316 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47194 * 120.00263 * 24 22 20 27 27 H 1.48502 * 109.47156 * 240.00261 * 24 22 20 28 28 C 1.53002 * 117.49388 * 269.60803 * 19 18 17 29 29 C 1.52995 * 117.49640 * 200.94967 * 19 18 17 30 30 H 1.08997 * 109.46881 * 300.00301 * 1 2 3 31 31 H 1.09000 * 109.46802 * 60.00067 * 1 2 3 32 32 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47599 * 239.99896 * 2 1 3 34 34 H 1.09005 * 109.46989 * 119.99525 * 2 1 3 35 35 H 1.09004 * 109.46895 * 59.99720 * 3 2 1 36 36 H 1.08997 * 109.46818 * 300.00361 * 3 2 1 37 37 H 1.09004 * 109.47004 * 60.00027 * 4 3 2 38 38 H 1.08997 * 109.47501 * 300.00184 * 4 3 2 39 39 H 1.09003 * 110.75717 * 38.30508 * 7 5 4 40 40 H 1.09007 * 110.75915 * 274.93884 * 7 5 4 41 41 H 1.09004 * 110.48540 * 203.37640 * 8 7 5 42 42 H 1.09000 * 110.59840 * 80.79674 * 8 7 5 43 43 H 1.08998 * 110.03200 * 264.32831 * 9 8 7 44 44 H 1.08994 * 110.03501 * 142.89464 * 9 8 7 45 45 H 0.97001 * 119.99814 * 93.54948 * 12 10 9 46 46 H 0.96995 * 119.99768 * 4.51119 * 17 15 13 47 47 H 1.09007 * 109.46595 * 305.01306 * 18 17 15 48 48 H 1.08993 * 109.47304 * 65.01242 * 18 17 15 49 49 H 0.96998 * 120.00334 * 184.99909 * 23 22 20 50 50 H 1.09003 * 117.50019 * 359.97438 * 28 19 18 51 51 H 1.08999 * 117.49756 * 145.02142 * 28 19 18 52 52 H 1.09003 * 117.49892 * 214.97815 * 29 19 18 53 53 H 1.08997 * 117.50262 * 359.97322 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6207 3.4527 -0.8090 7 6 3.7975 3.5604 1.3649 8 6 4.8549 4.6912 1.4121 9 6 6.1101 4.0625 0.7725 10 6 5.6174 2.9140 -0.1253 11 1 5.9049 3.0995 -1.1602 12 7 6.1823 1.6419 0.3318 13 6 7.3939 1.2463 -0.1064 14 8 8.0167 1.9437 -0.8800 15 6 7.9704 -0.0511 0.3603 16 8 7.3885 -0.7066 1.1994 17 7 9.1394 -0.4903 -0.1467 18 6 9.6553 -1.8069 0.2362 19 6 11.0436 -2.0080 -0.3747 20 6 12.0586 -0.9436 -0.0465 21 1 12.1158 -0.0483 -0.6478 22 6 12.9141 -1.1126 1.0215 23 7 12.9079 -2.2410 1.6968 24 14 14.0820 0.2613 1.5091 25 1 13.8934 1.4183 0.5975 26 1 13.7980 0.6803 2.9052 27 1 15.4828 -0.2222 1.4127 28 6 11.1191 -2.6530 -1.7600 29 6 11.5490 -3.4445 -0.5224 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9337 0.9285 -0.8892 38 1 3.9331 0.9287 0.8908 39 1 3.9483 2.8561 2.1831 40 1 2.7890 3.9733 1.3902 41 1 5.0569 4.9818 2.4431 42 1 4.5219 5.5521 0.8325 43 1 6.7694 3.6733 1.5483 44 1 6.6359 4.8056 0.1732 45 1 5.6843 1.0843 0.9498 46 1 9.6391 0.0653 -0.7651 47 1 9.7239 -1.8684 1.3224 48 1 8.9816 -2.5816 -0.1298 49 1 13.4565 -2.3338 2.4913 50 1 10.1797 -2.9344 -2.2361 51 1 11.9031 -2.3077 -2.4339 52 1 12.6157 -3.6196 -0.3825 53 1 10.8927 -4.2463 -0.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324123500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:43 Heat of formation + Delta-G solvation = -95.411654 kcal Electronic energy + Delta-G solvation = -29634.246418 eV Core-core repulsion = 25697.602851 eV Total energy + Delta-G solvation = -3936.643567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83474 -40.31562 -39.05369 -38.46697 -36.29240 -35.37894 -34.39602 -33.93023 -32.26140 -29.39772 -28.42812 -28.04517 -27.36228 -24.84372 -24.06292 -22.89011 -22.18886 -21.48753 -21.38142 -21.18561 -20.39062 -19.50789 -18.03983 -17.86890 -17.01213 -16.76973 -16.69833 -16.48364 -16.24890 -15.98854 -15.66951 -15.41827 -15.19119 -14.67368 -14.62978 -14.50686 -14.39706 -13.82066 -13.78388 -13.48363 -13.41454 -12.99355 -12.95113 -12.86698 -12.78476 -12.56886 -12.38726 -12.35891 -12.09764 -11.98703 -11.96339 -11.70757 -11.52665 -11.46718 -11.38973 -11.22865 -11.20230 -11.06126 -10.71852 -10.40160 -10.27012 -10.18442 -9.89237 -8.12709 -6.25788 0.38650 1.37202 1.40182 1.41884 1.51041 2.17542 2.39991 2.73186 3.13780 3.39340 3.49485 3.61305 3.63171 3.76524 4.12217 4.15650 4.20798 4.26177 4.37669 4.45142 4.50495 4.54648 4.55827 4.59591 4.62309 4.66906 4.69822 4.75832 4.89424 4.90584 4.95396 4.96914 5.03872 5.04095 5.06660 5.16369 5.23008 5.25568 5.27505 5.30208 5.34075 5.35243 5.43412 5.48699 5.51169 5.54890 5.56152 5.72438 5.76770 6.03124 6.34323 6.46481 6.79724 6.81389 7.01030 7.43413 8.93489 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.002633 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.952657 B =10632.811614 C =12002.797672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.087 4.087 6 H 0.106 0.894 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.137 3.863 11 H 0.083 0.917 12 N -0.680 5.680 13 C 0.513 3.487 14 O -0.542 6.542 15 C 0.494 3.506 16 O -0.557 6.557 17 N -0.667 5.667 18 C 0.173 3.827 19 C -0.009 4.009 20 C -0.504 4.504 21 H 0.056 0.944 22 C 0.028 3.972 23 N -0.902 5.902 24 Si 0.943 3.057 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.281 1.281 28 C -0.185 4.185 29 C -0.138 4.138 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.416 0.584 46 H 0.415 0.585 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.259 0.741 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.068 0.932 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.920 10.692 -2.897 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.153 4.153 5 C -0.106 4.106 6 H 0.124 0.876 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.177 4.177 10 C 0.033 3.967 11 H 0.101 0.899 12 N -0.334 5.334 13 C 0.293 3.707 14 O -0.419 6.419 15 C 0.274 3.726 16 O -0.437 6.437 17 N -0.317 5.317 18 C 0.050 3.950 19 C -0.010 4.010 20 C -0.541 4.541 21 H 0.074 0.926 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.207 1.207 28 C -0.222 4.222 29 C -0.176 4.176 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.255 0.745 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.110 0.890 51 H 0.097 0.903 52 H 0.087 0.913 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.744 10.594 -2.761 26.146 hybrid contribution 1.362 0.231 0.614 1.512 sum -22.382 10.825 -2.147 24.955 Atomic orbital electron populations 1.21759 0.95286 1.01694 1.02094 1.21574 0.96393 0.97311 1.01589 1.21553 0.93835 0.96523 1.02816 1.21599 0.96607 0.95488 1.01590 1.22299 0.91102 0.97168 1.00015 0.87604 1.22618 0.99769 0.97120 0.95834 1.22337 0.93791 0.98402 1.01014 1.22611 0.99019 0.97303 0.98780 1.21960 0.94456 0.81489 0.98803 0.89864 1.46026 1.17129 1.23200 1.47091 1.20022 0.83098 0.86016 0.81568 1.90738 1.60348 1.55670 1.35146 1.20412 0.82620 0.86884 0.82655 1.90691 1.61741 1.58740 1.32564 1.45764 1.20309 1.19950 1.45683 1.20864 0.93898 0.81871 0.98395 1.19120 0.92127 0.94152 0.95617 1.20643 1.15986 1.03534 1.13973 0.92558 1.25621 0.97863 0.96928 0.96920 1.70111 1.41331 1.24789 1.17726 0.85746 0.79096 0.80293 0.77976 1.19238 1.21136 1.20698 1.23099 1.01782 1.06042 0.91247 1.22340 1.00013 0.94276 1.00981 0.92328 0.92406 0.92956 0.92786 0.92607 0.90921 0.91304 0.92680 0.92349 0.91695 0.89203 0.91252 0.89984 0.93003 0.91204 0.74469 0.74883 0.94133 0.92305 0.93130 0.89031 0.90260 0.91318 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.73 5.93 30.59 0.18 -1.55 16 3 C -0.11 -1.24 5.09 30.59 0.16 -1.09 16 4 C -0.12 -1.63 3.74 30.59 0.11 -1.51 16 5 C -0.09 -1.14 2.81 -9.72 -0.03 -1.17 16 6 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 7 C -0.12 -1.31 5.67 31.89 0.18 -1.13 16 8 C -0.12 -1.52 6.83 31.67 0.22 -1.31 16 9 C -0.14 -2.65 6.59 31.32 0.21 -2.44 16 10 C 0.14 2.69 3.10 45.71 0.14 2.83 16 11 H 0.08 1.84 7.61 -2.39 -0.02 1.82 16 12 N -0.68 -16.83 4.37 -440.44 -1.92 -18.76 16 13 C 0.51 16.78 7.88 87.27 0.69 17.47 16 14 O -0.54 -19.88 16.16 -3.24 -0.05 -19.93 16 15 C 0.49 18.71 7.88 87.27 0.69 19.40 16 16 O -0.56 -22.75 16.47 -3.25 -0.05 -22.81 16 17 N -0.67 -27.00 5.35 -464.41 -2.48 -29.48 16 18 C 0.17 7.65 5.59 86.38 0.48 8.13 16 19 C -0.01 -0.44 1.74 -52.93 -0.09 -0.54 16 20 C -0.50 -26.43 8.31 25.60 0.21 -26.22 16 21 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 22 C 0.03 1.48 5.41 84.66 0.46 1.94 16 23 N -0.90 -50.64 11.86 21.45 0.25 -50.39 16 24 Si 0.94 43.40 29.54 68.60 2.03 45.42 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 C -0.18 -7.51 9.93 30.62 0.30 -7.21 16 29 C -0.14 -6.30 8.87 30.62 0.27 -6.03 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 0.71 7.56 -2.38 -0.02 0.69 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 0.92 6.40 -2.39 -0.02 0.90 16 39 H 0.06 0.83 7.97 -2.39 -0.02 0.81 16 40 H 0.09 0.71 8.06 -2.38 -0.02 0.69 16 41 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 1.21 7.92 -2.39 -0.02 1.19 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.42 9.61 5.98 -92.71 -0.55 9.06 16 46 H 0.41 16.74 7.63 -92.71 -0.71 16.03 16 47 H 0.04 2.03 8.10 -2.38 -0.02 2.01 16 48 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 49 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 50 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 51 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 52 H 0.07 3.49 7.59 -2.39 -0.02 3.47 16 53 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -61.65 423.37 2.29 -59.36 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.37 Total: 37.96 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.90 Total: -1.38 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -4.15 Total: -98.63 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.11 Total: -42.74 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.65 2.29 -59.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324123500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.047 kcal (2) G-P(sol) polarization free energy of solvation -61.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds