Wall clock time and date at job start Tue Mar 31 2020 19:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47480 * 2 1 4 4 C 1.53007 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46830 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.02020 * 53.61204 * 5 4 3 7 7 C 1.54266 * 110.03353 * 292.16465 * 5 4 3 8 8 C 1.54895 * 104.19710 * 217.11078 * 7 5 4 9 9 C 1.54893 * 102.74761 * 37.93748 * 8 7 5 10 10 C 1.53873 * 110.02858 * 174.99905 * 5 4 3 11 11 H 1.08998 * 110.03247 * 359.97438 * 10 5 4 12 12 N 1.46498 * 110.03385 * 238.61839 * 10 5 4 13 13 C 1.34776 * 120.00343 * 155.00168 * 12 10 5 14 14 O 1.21343 * 119.99894 * 359.97438 * 13 12 10 15 15 C 1.49448 * 120.00211 * 179.97438 * 13 12 10 16 16 O 1.21354 * 120.00194 * 354.86810 * 15 13 12 17 17 N 1.34777 * 120.00248 * 174.86032 * 15 13 12 18 18 C 1.46497 * 120.00061 * 184.87609 * 17 15 13 19 19 C 1.53000 * 109.46778 * 185.62608 * 18 17 15 20 20 C 1.50696 * 115.55465 * 32.55884 * 19 18 17 21 21 H 1.08003 * 120.00224 * 267.33298 * 20 19 18 22 22 C 1.37883 * 119.99814 * 87.33120 * 20 19 18 23 23 N 1.31514 * 119.99726 * 178.80647 * 22 20 19 24 24 Si 1.86797 * 120.00079 * 358.79897 * 22 20 19 25 25 H 1.48503 * 109.46913 * 91.25153 * 24 22 20 26 26 H 1.48499 * 109.47151 * 211.25101 * 24 22 20 27 27 H 1.48498 * 109.47131 * 331.25082 * 24 22 20 28 28 C 1.53005 * 117.49768 * 246.84878 * 19 18 17 29 29 C 1.53007 * 60.00082 * 252.51161 * 28 19 18 30 30 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46822 * 300.00163 * 1 2 3 32 32 H 1.08997 * 109.46894 * 59.99803 * 1 2 3 33 33 H 1.09006 * 109.46906 * 239.99805 * 2 1 3 34 34 H 1.09005 * 109.47286 * 120.00711 * 2 1 3 35 35 H 1.08996 * 109.47226 * 60.00084 * 3 2 1 36 36 H 1.09007 * 109.47235 * 300.00116 * 3 2 1 37 37 H 1.08997 * 109.46857 * 60.00204 * 4 3 2 38 38 H 1.08997 * 109.46748 * 299.99996 * 4 3 2 39 39 H 1.08999 * 110.48717 * 335.78440 * 7 5 4 40 40 H 1.08993 * 110.48762 * 98.43300 * 7 5 4 41 41 H 1.09005 * 110.75205 * 279.62755 * 8 7 5 42 42 H 1.08992 * 110.91480 * 156.33303 * 8 7 5 43 43 H 1.08993 * 110.48472 * 203.37822 * 9 8 7 44 44 H 1.09005 * 110.48028 * 80.74178 * 9 8 7 45 45 H 0.97004 * 119.99819 * 334.99548 * 12 10 5 46 46 H 0.97002 * 119.99837 * 4.88302 * 17 15 13 47 47 H 1.08997 * 109.47201 * 305.62392 * 18 17 15 48 48 H 1.09003 * 109.47306 * 65.62769 * 18 17 15 49 49 H 0.97004 * 120.00006 * 180.02562 * 23 22 20 50 50 H 1.09001 * 117.49885 * 0.02562 * 28 19 18 51 51 H 1.08999 * 117.49587 * 145.02720 * 28 19 18 52 52 H 1.08995 * 117.49795 * 252.51258 * 29 28 19 53 53 H 1.08996 * 117.51383 * 107.48013 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6320 3.4387 0.8250 7 6 3.7402 3.5661 -1.3417 8 6 4.9685 4.4633 -1.6341 9 6 6.1522 3.5925 -1.1444 10 6 5.6136 2.9016 0.1254 11 1 5.9945 1.8821 0.1862 12 7 6.0116 3.6569 1.3159 13 6 7.1946 3.4042 1.9101 14 8 7.9300 2.5507 1.4592 15 6 7.6009 4.1751 3.1242 16 8 6.9104 5.0909 3.5207 17 7 8.7340 3.8531 3.7791 18 6 9.0776 4.5369 5.0283 19 6 10.4668 4.0905 5.4885 20 6 11.4418 3.7616 4.3875 21 1 11.5328 2.7457 4.0324 22 6 12.2176 4.7577 3.8334 23 7 13.0853 4.4667 2.8889 24 14 12.0362 6.5205 4.4241 25 1 12.9920 6.7719 5.5326 26 1 12.3233 7.4505 3.3025 27 1 10.6493 6.7405 4.9070 28 6 10.5547 3.2722 6.7783 29 6 11.0276 4.7272 6.7618 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 1.6768 1.9562 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8909 38 1 3.9338 0.9284 0.8891 39 1 3.6165 2.8209 -2.1274 40 1 2.8396 4.1723 -1.2443 41 1 4.9119 5.3925 -1.0668 42 1 5.0552 4.6686 -2.7010 43 1 7.0116 4.2179 -0.9032 44 1 6.4180 2.8515 -1.8984 45 1 5.4237 4.3390 1.6765 46 1 9.3221 3.1688 3.4231 47 1 9.0779 5.6145 4.8645 48 1 8.3432 4.2859 5.7938 49 1 13.6314 5.1674 2.4993 50 1 9.6227 3.0514 7.2987 51 1 11.3177 2.4956 6.8306 52 1 12.1017 4.9077 6.8032 53 1 10.4070 5.4642 7.2713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324123501.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:46 Heat of formation + Delta-G solvation = -98.972113 kcal Electronic energy + Delta-G solvation = -29476.520348 eV Core-core repulsion = 25539.722388 eV Total energy + Delta-G solvation = -3936.797960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80039 -40.31166 -39.15391 -38.64858 -36.40323 -35.35409 -34.38366 -34.26792 -32.20078 -29.45293 -28.56191 -28.05825 -27.46229 -25.05876 -23.64563 -23.31408 -22.15226 -21.75945 -21.30612 -21.05736 -20.54923 -19.25776 -18.34005 -17.86334 -17.21959 -17.01877 -16.75275 -16.45330 -16.25776 -16.02809 -15.63977 -15.25481 -15.02732 -14.81572 -14.61473 -14.61228 -14.45529 -14.19929 -14.03678 -13.80977 -13.18738 -13.11641 -13.07736 -12.80347 -12.70103 -12.61719 -12.34772 -12.15877 -12.01686 -11.99849 -11.96201 -11.72830 -11.64853 -11.57184 -11.48117 -11.37124 -11.22050 -11.05034 -10.76327 -10.61513 -10.43712 -10.23314 -9.93009 -8.32020 -6.40062 0.37394 1.31627 1.37246 1.40096 1.46916 2.15895 2.33993 2.71120 3.04027 3.19005 3.43933 3.54887 3.62138 3.83440 4.00605 4.06012 4.13706 4.27115 4.32428 4.38473 4.38741 4.46801 4.49950 4.56369 4.57766 4.62072 4.68428 4.76537 4.78307 4.87881 4.88245 4.93035 4.96031 5.00840 5.04237 5.07686 5.15056 5.17126 5.20256 5.25117 5.27369 5.35056 5.37467 5.43398 5.47175 5.49867 5.53683 5.57284 5.67488 6.01985 6.26161 6.45967 6.70513 6.79197 7.00109 7.31217 8.82250 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.002418 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.061200 B =11578.384765 C =12346.960529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.110 4.110 5 C -0.090 4.090 6 H 0.086 0.914 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.138 4.138 10 C 0.136 3.864 11 H 0.080 0.920 12 N -0.679 5.679 13 C 0.509 3.491 14 O -0.544 6.544 15 C 0.495 3.505 16 O -0.555 6.555 17 N -0.669 5.669 18 C 0.154 3.846 19 C -0.048 4.048 20 C -0.483 4.483 21 H 0.042 0.958 22 C 0.029 3.971 23 N -0.940 5.940 24 Si 0.929 3.071 25 H -0.265 1.265 26 H -0.305 1.305 27 H -0.235 1.235 28 C -0.156 4.156 29 C -0.188 4.188 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.417 0.583 46 H 0.416 0.584 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.265 0.735 50 H 0.108 0.892 51 H 0.081 0.919 52 H 0.077 0.923 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.224 -3.167 -6.219 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.147 4.147 5 C -0.109 4.109 6 H 0.105 0.895 7 C -0.146 4.146 8 C -0.159 4.159 9 C -0.177 4.177 10 C 0.033 3.967 11 H 0.098 0.902 12 N -0.333 5.333 13 C 0.289 3.711 14 O -0.421 6.421 15 C 0.275 3.725 16 O -0.435 6.435 17 N -0.320 5.320 18 C 0.030 3.970 19 C -0.049 4.049 20 C -0.520 4.520 21 H 0.060 0.940 22 C -0.170 4.170 23 N -0.579 5.579 24 Si 0.755 3.245 25 H -0.190 1.190 26 H -0.233 1.233 27 H -0.159 1.159 28 C -0.193 4.193 29 C -0.225 4.225 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.255 0.745 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.126 0.874 51 H 0.100 0.900 52 H 0.095 0.905 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.048 -3.101 -6.350 26.026 hybrid contribution 1.076 0.709 0.026 1.289 sum -23.972 -2.392 -6.324 24.907 Atomic orbital electron populations 1.21773 0.95485 1.01755 1.01972 1.21553 0.96216 0.96992 1.01807 1.21583 0.94106 0.96816 1.02583 1.21677 0.96335 0.94650 1.02079 1.22066 0.91038 0.97842 0.99920 0.89536 1.22430 0.97909 0.98584 0.95659 1.22516 0.93847 0.97912 1.01646 1.22795 0.98481 0.99601 0.96801 1.22005 0.96085 0.95432 0.83220 0.90217 1.45908 1.18270 1.40031 1.29066 1.20139 0.83117 0.83327 0.84502 1.90773 1.52492 1.33589 1.65278 1.20306 0.82543 0.84653 0.84963 1.90672 1.54163 1.30413 1.68291 1.45964 1.21458 1.40204 1.24390 1.21176 0.95563 0.95897 0.84336 1.19528 0.93224 1.03545 0.88650 1.20266 1.19304 0.94808 1.17640 0.93989 1.25742 0.94049 1.02858 0.94305 1.70033 1.24836 1.34852 1.28173 0.86056 0.80954 0.79920 0.77585 1.19044 1.23284 1.15868 1.22980 1.02590 0.93327 1.00358 1.23019 1.00564 0.96989 1.01967 0.92705 0.92844 0.92288 0.91938 0.92770 0.92103 0.90800 0.91234 0.92967 0.90127 0.89767 0.91699 0.90255 0.93656 0.90002 0.74472 0.74518 0.92586 0.90297 0.92644 0.87360 0.90026 0.90479 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.46 5.93 30.59 0.18 -1.27 16 3 C -0.11 -1.25 5.07 30.59 0.16 -1.09 16 4 C -0.11 -1.48 4.34 30.60 0.13 -1.35 16 5 C -0.09 -1.30 2.70 -10.07 -0.03 -1.32 16 6 H 0.09 1.19 7.62 -2.39 -0.02 1.18 16 7 C -0.11 -1.24 5.53 31.67 0.18 -1.06 16 8 C -0.12 -1.83 6.91 31.89 0.22 -1.61 16 9 C -0.14 -2.92 6.54 31.67 0.21 -2.71 16 10 C 0.14 2.94 2.90 45.72 0.13 3.07 16 11 H 0.08 2.00 7.09 -2.39 -0.02 1.99 16 12 N -0.68 -17.67 5.02 -440.45 -2.21 -19.88 16 13 C 0.51 17.77 7.88 87.27 0.69 18.46 16 14 O -0.54 -22.25 16.14 -3.23 -0.05 -22.30 16 15 C 0.49 18.99 7.88 87.27 0.69 19.68 16 16 O -0.56 -21.79 16.46 -3.26 -0.05 -21.84 16 17 N -0.67 -27.67 5.28 -464.41 -2.45 -30.12 16 18 C 0.15 6.13 5.63 86.38 0.49 6.61 16 19 C -0.05 -2.07 1.24 -52.92 -0.07 -2.13 16 20 C -0.48 -25.82 7.79 25.60 0.20 -25.62 16 21 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 22 C 0.03 1.66 5.47 84.66 0.46 2.12 16 23 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 24 Si 0.93 44.00 25.16 68.60 1.73 45.73 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 27 H -0.24 -10.27 5.30 99.48 0.53 -9.75 16 28 C -0.16 -5.56 9.88 30.60 0.30 -5.26 16 29 C -0.19 -7.07 7.60 30.60 0.23 -6.84 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.68 7.51 -2.38 -0.02 0.66 16 37 H 0.07 0.91 8.00 -2.39 -0.02 0.89 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.80 7.76 -2.39 -0.02 0.78 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 1.21 8.04 -2.39 -0.02 1.19 16 44 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.42 9.49 7.80 -92.71 -0.72 8.76 16 46 H 0.42 18.70 6.76 -92.71 -0.63 18.07 16 47 H 0.06 2.36 6.38 -2.39 -0.02 2.35 16 48 H 0.08 2.72 7.89 -2.39 -0.02 2.70 16 49 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 50 H 0.11 3.17 8.04 -2.39 -0.02 3.15 16 51 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 52 H 0.08 3.12 7.22 -2.39 -0.02 3.10 16 53 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -66.69 417.06 1.50 -65.19 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.64 Total: 41.85 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 4.88 Total: -1.15 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -4.36 Total: -107.48 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.11 Total: -44.14 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.73 Total: 45.73 kcal Total: -66.69 1.50 -65.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324123501.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.782 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds