Wall clock time and date at job start Tue Mar 31 2020 19:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46810 * 2 1 4 4 C 1.52993 * 109.47067 * 119.99499 * 2 1 3 5 5 C 1.52999 * 109.46958 * 68.01199 * 4 2 1 6 6 H 1.08998 * 109.49668 * 300.26504 * 5 4 2 7 7 C 1.53047 * 109.49900 * 180.20389 * 5 4 2 8 8 C 1.53035 * 109.54026 * 178.68060 * 7 5 4 9 9 C 1.53195 * 109.31112 * 61.36291 * 8 7 5 10 10 N 1.46923 * 108.77555 * 305.36377 * 9 8 7 11 11 C 1.34777 * 120.63438 * 233.60826 * 10 9 8 12 12 O 1.21346 * 120.00420 * 173.07662 * 11 10 9 13 13 C 1.49453 * 119.99770 * 353.07988 * 11 10 9 14 14 O 1.21357 * 119.99833 * 353.11805 * 13 11 10 15 15 N 1.34770 * 119.99923 * 173.12253 * 13 11 10 16 16 C 1.46505 * 120.00105 * 185.01878 * 15 13 11 17 17 C 1.52999 * 109.47564 * 184.83486 * 16 15 13 18 18 C 1.50702 * 115.54591 * 305.90127 * 17 16 15 19 19 H 1.08004 * 119.99680 * 144.67667 * 18 17 16 20 20 C 1.37876 * 120.00193 * 324.66749 * 18 17 16 21 21 N 1.31509 * 119.99776 * 3.47180 * 20 18 17 22 22 Si 1.86804 * 120.00000 * 183.46661 * 20 18 17 23 23 H 1.48500 * 109.46639 * 90.00227 * 22 20 18 24 24 H 1.48498 * 109.47115 * 210.00331 * 22 20 18 25 25 H 1.48505 * 109.46912 * 330.00476 * 22 20 18 26 26 C 1.53001 * 117.50041 * 160.22890 * 17 16 15 27 27 C 1.52994 * 117.49751 * 91.56881 * 17 16 15 28 28 C 1.46935 * 118.76473 * 53.59300 * 10 9 8 29 29 H 1.08994 * 109.47604 * 299.99890 * 1 2 3 30 30 H 1.09000 * 109.47228 * 60.00484 * 1 2 3 31 31 H 1.09007 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47604 * 240.00110 * 2 1 3 33 33 H 1.09004 * 109.47351 * 64.92620 * 3 2 1 34 34 H 1.08996 * 109.47325 * 184.92793 * 3 2 1 35 35 H 1.09004 * 109.47234 * 304.92973 * 3 2 1 36 36 H 1.09007 * 109.47371 * 188.00470 * 4 2 1 37 37 H 1.08995 * 109.47542 * 308.00787 * 4 2 1 38 38 H 1.09005 * 109.45942 * 298.70236 * 7 5 4 39 39 H 1.09000 * 109.46252 * 58.65570 * 7 5 4 40 40 H 1.08997 * 109.49779 * 181.31516 * 8 7 5 41 41 H 1.08996 * 109.49581 * 301.41443 * 8 7 5 42 42 H 1.08995 * 109.58600 * 65.15326 * 9 8 7 43 43 H 1.09007 * 109.58605 * 185.43540 * 9 8 7 44 44 H 0.97001 * 120.00592 * 5.01637 * 15 13 11 45 45 H 1.09001 * 109.46730 * 304.83864 * 16 15 13 46 46 H 1.09003 * 109.47061 * 64.83250 * 16 15 13 47 47 H 0.97001 * 119.99736 * 185.00054 * 21 20 18 48 48 H 1.09002 * 117.49921 * 359.97438 * 26 17 16 49 49 H 1.08992 * 117.49720 * 145.01962 * 26 17 16 50 50 H 1.09005 * 117.50161 * 214.98532 * 27 17 16 51 51 H 1.09005 * 117.50354 * 0.02562 * 27 17 16 52 52 H 1.09002 * 109.61472 * 186.64068 * 28 10 9 53 53 H 1.09000 * 109.56470 * 66.20872 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.7007 -2.2099 1.1529 6 1 0.6206 -2.3325 1.0736 7 6 2.2061 -2.9311 2.4046 8 6 1.8383 -4.4144 2.3243 9 6 2.5154 -5.0387 1.1001 10 7 2.1487 -4.2608 -0.0911 11 6 1.6139 -4.8671 -1.1695 12 8 1.1996 -4.2022 -2.0962 13 6 1.5310 -6.3583 -1.2238 14 8 2.0557 -7.0271 -0.3578 15 7 0.8736 -6.9603 -2.2347 16 6 0.6974 -8.4147 -2.2307 17 6 0.0310 -8.8514 -3.5368 18 6 -1.2642 -8.1565 -3.8696 19 1 -1.5095 -7.9350 -4.8978 20 6 -2.1361 -7.8037 -2.8614 21 7 -1.8074 -8.0116 -1.6052 22 14 -3.7841 -7.0302 -3.2801 23 1 -4.8029 -8.0973 -3.4492 24 1 -4.1975 -6.1208 -2.1813 25 1 -3.6620 -6.2578 -4.5425 26 6 0.1702 -10.3195 -3.9446 27 6 0.9449 -9.2378 -4.7014 28 6 2.3756 -2.8091 -0.0850 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.7504 1.9303 0.9308 34 1 3.1263 1.4439 -0.0883 35 1 1.6062 1.9813 -0.8426 36 1 3.1206 -0.5989 1.3237 37 1 1.5645 -0.2966 2.1334 38 1 3.2893 -2.8285 2.4704 39 1 1.7456 -2.4901 3.2887 40 1 2.1780 -4.9228 3.2267 41 1 0.7570 -4.5167 2.2337 42 1 3.5972 -5.0186 1.2309 43 1 2.1805 -6.0695 0.9833 44 1 0.5170 -6.4306 -2.9649 45 1 1.6701 -8.8982 -2.1396 46 1 0.0685 -8.7022 -1.3881 47 1 -2.4484 -7.8312 -0.8999 48 1 0.7369 -10.9742 -3.2825 49 1 -0.6749 -10.7826 -4.4538 50 1 0.6093 -8.9897 -5.7084 51 1 2.0210 -9.1813 -4.5370 52 1 1.9464 -2.3679 -0.9846 53 1 3.4461 -2.6071 -0.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324125850.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:57 Heat of formation + Delta-G solvation = -69.499585 kcal Electronic energy + Delta-G solvation = -30742.028923 eV Core-core repulsion = 26806.508988 eV Total energy + Delta-G solvation = -3935.519935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.92710 -40.08707 -39.00019 -38.49556 -37.08693 -34.97663 -34.17547 -33.75451 -32.24599 -28.75610 -28.02942 -27.69169 -27.25984 -26.66397 -23.86145 -23.55031 -22.94438 -21.45052 -21.23196 -20.71235 -20.32190 -18.83776 -18.05777 -17.89205 -17.05853 -16.76130 -16.54351 -16.44775 -15.89839 -15.56418 -15.41994 -15.34778 -15.07874 -14.86929 -14.72979 -14.39453 -14.07561 -13.99016 -13.86554 -13.63111 -13.34841 -13.21703 -13.00647 -12.93790 -12.76542 -12.64289 -12.49875 -12.33577 -12.19760 -12.09438 -12.05354 -11.87017 -11.77131 -11.48264 -11.40501 -11.28710 -11.02465 -10.93811 -10.73156 -10.22562 -10.07326 -9.82052 -9.70722 -8.01393 -6.23013 0.45872 1.38643 1.43689 1.44313 1.50309 2.26118 2.38936 2.63837 3.02864 3.47427 3.62683 3.68453 3.79913 3.90244 4.07617 4.11909 4.17728 4.20737 4.23302 4.35079 4.48402 4.50301 4.59564 4.68069 4.71064 4.76508 4.78546 4.80678 4.85055 4.90371 4.96050 4.98074 5.00748 5.02916 5.07585 5.09951 5.12243 5.19020 5.23661 5.28057 5.33649 5.38037 5.44480 5.51446 5.53509 5.55143 5.58008 5.76924 5.92248 6.04486 6.33714 6.46779 6.76789 6.87429 7.15727 7.41796 8.86993 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003299 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.569998 B = 8486.585892 C = 9451.141099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.096 4.096 5 C -0.098 4.098 6 H 0.055 0.945 7 C -0.108 4.108 8 C -0.131 4.131 9 C 0.062 3.938 10 N -0.577 5.577 11 C 0.505 3.495 12 O -0.553 6.553 13 C 0.492 3.508 14 O -0.548 6.548 15 N -0.645 5.645 16 C 0.174 3.826 17 C 0.001 3.999 18 C -0.506 4.506 19 H 0.055 0.945 20 C 0.039 3.961 21 N -0.890 5.890 22 Si 0.943 3.057 23 H -0.275 1.275 24 H -0.291 1.291 25 H -0.271 1.271 26 C -0.189 4.189 27 C -0.191 4.191 28 C 0.108 3.892 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.407 0.593 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.259 0.741 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.077 0.923 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 14.165 9.191 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.134 4.134 5 C -0.117 4.117 6 H 0.073 0.927 7 C -0.146 4.146 8 C -0.169 4.169 9 C -0.059 4.059 10 N -0.309 5.309 11 C 0.288 3.712 12 O -0.432 6.432 13 C 0.273 3.727 14 O -0.431 6.431 15 N -0.291 5.291 16 C 0.051 3.949 17 C 0.001 3.999 18 C -0.543 4.543 19 H 0.074 0.926 20 C -0.163 4.163 21 N -0.528 5.528 22 Si 0.770 3.230 23 H -0.200 1.200 24 H -0.217 1.217 25 H -0.196 1.196 26 C -0.228 4.228 27 C -0.228 4.228 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.139 0.861 44 H 0.243 0.757 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.104 0.896 52 H 0.096 0.904 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.801 14.117 9.484 19.629 hybrid contribution -1.486 0.201 -0.790 1.695 sum 8.315 14.318 8.694 18.701 Atomic orbital electron populations 1.21871 0.96060 1.00805 1.01843 1.21219 0.95423 0.97104 0.98595 1.21798 1.01213 0.94912 1.02014 1.21591 1.02053 0.91808 0.97926 1.21530 0.99674 0.96153 0.94389 0.92651 1.21585 1.02158 0.93697 0.97111 1.21920 0.99904 0.97226 0.97863 1.22974 1.00908 0.99061 0.82955 1.48059 1.59099 1.09258 1.14490 1.20264 0.78712 0.88727 0.83498 1.90694 1.47812 1.66424 1.38263 1.20149 0.80779 0.88738 0.82987 1.90365 1.48665 1.66130 1.37889 1.45612 1.51104 1.09859 1.22538 1.21011 0.96432 0.77454 0.99968 1.19274 0.94866 0.94368 0.91428 1.20742 1.02665 1.37953 0.92967 0.92641 1.25499 1.00710 0.95216 0.94863 1.69979 1.34490 1.48946 0.99362 0.85769 0.81083 0.78440 0.77707 1.20019 1.21747 1.19579 1.22962 1.02177 0.93162 1.04452 1.22970 0.96803 1.05754 0.97272 1.22036 1.01427 0.77733 1.00127 0.91777 0.93168 0.94478 0.92204 0.91948 0.91995 0.93033 0.90129 0.90389 0.90035 0.90165 0.88597 0.93737 0.89879 0.86099 0.75730 0.94631 0.89157 0.93158 0.89920 0.90284 0.90045 0.89631 0.90444 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.99 71.98 0.65 -2.25 16 2 C -0.10 -1.79 2.75 -10.79 -0.03 -1.82 16 3 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 4 C -0.10 -1.41 4.19 30.59 0.13 -1.28 16 5 C -0.10 -1.94 2.20 -10.71 -0.02 -1.97 16 6 H 0.06 1.37 6.66 -2.39 -0.02 1.35 16 7 C -0.11 -1.80 5.17 30.62 0.16 -1.64 16 8 C -0.13 -2.84 6.08 30.67 0.19 -2.65 16 9 C 0.06 1.68 6.02 86.36 0.52 2.20 16 10 N -0.58 -17.92 2.97 -820.46 -2.44 -20.36 16 11 C 0.51 19.91 7.74 87.27 0.68 20.58 16 12 O -0.55 -24.09 15.92 -3.23 -0.05 -24.14 16 13 C 0.49 21.18 7.75 87.27 0.68 21.86 16 14 O -0.55 -23.78 13.12 -3.27 -0.04 -23.82 16 15 N -0.65 -29.45 5.10 -464.40 -2.37 -31.82 16 16 C 0.17 8.17 4.62 86.38 0.40 8.57 16 17 C 0.00 0.06 2.07 -52.93 -0.11 -0.05 16 18 C -0.51 -26.01 8.29 25.60 0.21 -25.80 16 19 H 0.06 2.87 7.82 -2.91 -0.02 2.84 16 20 C 0.04 2.00 5.30 84.66 0.45 2.45 16 21 N -0.89 -47.58 10.14 21.45 0.22 -47.36 16 22 Si 0.94 42.51 29.54 68.60 2.03 44.53 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.19 -7.88 9.96 30.62 0.30 -7.57 16 27 C -0.19 -7.67 9.92 30.62 0.30 -7.36 16 28 C 0.11 2.65 5.22 86.36 0.45 3.11 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.87 6.67 -2.38 -0.02 0.86 16 32 H 0.06 1.21 6.17 -2.39 -0.01 1.19 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.96 8.13 -2.38 -0.02 0.94 16 37 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 38 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 43 H 0.12 4.13 4.22 -55.70 -0.23 3.89 16 44 H 0.41 19.33 7.41 -92.71 -0.69 18.64 16 45 H 0.04 1.59 8.05 -2.39 -0.02 1.57 16 46 H 0.09 4.78 5.94 -2.39 -0.01 4.77 16 47 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 48 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 49 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 50 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 51 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 52 H 0.08 2.21 5.44 -2.39 -0.01 2.20 16 53 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -58.52 408.67 2.94 -55.58 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.02 Total: 42.27 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.61 Total: 5.11 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -4.59 Total: -99.53 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.09 Total: -47.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -58.52 2.94 -55.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324125850.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.916 kcal (2) G-P(sol) polarization free energy of solvation -58.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds