Wall clock time and date at job start Tue Mar 31 2020 19:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 C 1.53003 * 109.46907 * 119.99990 * 2 1 3 5 5 C 1.53007 * 109.47102 * 175.00016 * 4 2 1 6 6 H 1.09003 * 109.49705 * 55.05897 * 5 4 2 7 7 C 1.53043 * 109.52521 * 175.14381 * 5 4 2 8 8 C 1.53349 * 109.60798 * 181.33996 * 7 5 4 9 9 C 1.53193 * 109.14731 * 298.71642 * 8 7 5 10 10 N 1.46917 * 108.89734 * 54.57751 * 9 8 7 11 11 C 1.34770 * 120.63168 * 126.34377 * 10 9 8 12 12 O 1.21350 * 120.00185 * 173.08938 * 11 10 9 13 13 C 1.49448 * 120.00204 * 353.08754 * 11 10 9 14 14 O 1.21354 * 120.00052 * 353.37038 * 13 11 10 15 15 N 1.34779 * 120.00614 * 173.36802 * 13 11 10 16 16 C 1.46492 * 120.00386 * 185.03307 * 15 13 11 17 17 C 1.52997 * 109.47183 * 174.95647 * 16 15 13 18 18 C 1.50698 * 115.55241 * 279.07441 * 17 16 15 19 19 H 1.08000 * 120.00460 * 94.57666 * 18 17 16 20 20 C 1.37881 * 120.00057 * 274.58496 * 18 17 16 21 21 N 1.31518 * 119.99855 * 4.74155 * 20 18 17 22 22 Si 1.86797 * 120.00482 * 184.74844 * 20 18 17 23 23 H 1.48509 * 109.47204 * 89.99336 * 22 20 18 24 24 H 1.48500 * 109.47447 * 209.99792 * 22 20 18 25 25 H 1.48500 * 109.46897 * 329.99859 * 22 20 18 26 26 C 1.53008 * 117.50182 * 133.36383 * 17 16 15 27 27 C 1.53002 * 117.50124 * 64.73939 * 17 16 15 28 28 C 1.46929 * 118.73929 * 306.31716 * 10 9 8 29 29 H 1.08992 * 109.46771 * 300.00165 * 1 2 3 30 30 H 1.08997 * 109.46634 * 60.00357 * 1 2 3 31 31 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47221 * 239.99678 * 2 1 3 33 33 H 1.08997 * 109.47206 * 59.99669 * 3 2 1 34 34 H 1.09001 * 109.47151 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46838 * 299.99925 * 3 2 1 36 36 H 1.08995 * 109.47390 * 54.99870 * 4 2 1 37 37 H 1.09005 * 109.46939 * 294.99466 * 4 2 1 38 38 H 1.08996 * 109.45743 * 301.35362 * 7 5 4 39 39 H 1.09003 * 109.45746 * 61.32608 * 7 5 4 40 40 H 1.09000 * 109.68372 * 178.74635 * 8 7 5 41 41 H 1.09000 * 109.47077 * 58.54745 * 8 7 5 42 42 H 1.09000 * 109.58293 * 294.71338 * 9 8 7 43 43 H 1.09001 * 109.58449 * 174.44087 * 9 8 7 44 44 H 0.97005 * 119.99092 * 5.02474 * 15 13 11 45 45 H 1.09001 * 109.46907 * 294.95002 * 16 15 13 46 46 H 1.09002 * 109.47603 * 54.95679 * 16 15 13 47 47 H 0.96994 * 120.00179 * 184.99429 * 21 20 18 48 48 H 1.09000 * 117.49217 * 0.02562 * 26 17 16 49 49 H 1.08998 * 117.50046 * 145.02075 * 26 17 16 50 50 H 1.08996 * 117.50433 * 214.97636 * 27 17 16 51 51 H 1.09005 * 117.49862 * 0.02562 * 27 17 16 52 52 H 1.08999 * 109.58937 * 173.39678 * 28 10 9 53 53 H 1.09003 * 109.58814 * 293.82798 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.8311 1.1880 6 1 3.9960 0.1610 1.0539 7 6 4.0863 -1.4428 2.4904 8 6 5.6170 -1.5229 2.4446 9 6 6.0384 -2.4252 1.2804 10 7 5.4214 -1.9260 0.0441 11 6 6.1759 -1.6569 -1.0397 12 8 5.6451 -1.3659 -2.0915 13 6 7.6663 -1.7166 -0.9463 14 8 8.2004 -1.8885 0.1297 15 7 8.4172 -1.5798 -2.0571 16 6 9.8706 -1.7480 -1.9840 17 6 10.4649 -1.6665 -3.3915 18 6 10.3745 -2.9291 -4.2093 19 1 9.5501 -3.0725 -4.8921 20 6 11.3443 -3.9014 -4.0858 21 7 12.2966 -3.7700 -3.1882 22 14 11.3058 -5.4052 -5.1932 23 1 12.0880 -5.1324 -6.4258 24 1 11.8985 -6.5630 -4.4768 25 1 9.9001 -5.7156 -5.5578 26 6 11.6997 -0.7845 -3.5872 27 6 10.3434 -0.3341 -4.1337 28 6 3.9661 -1.7263 0.0114 29 1 -0.3632 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7198 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.7810 -0.8206 3.3316 39 1 3.6744 -2.4448 2.6114 40 1 5.9911 -1.9379 3.3805 41 1 6.0289 -0.5244 2.2984 42 1 5.7044 -3.4454 1.4695 43 1 7.1236 -2.4089 1.1798 44 1 7.9952 -1.3700 -2.9050 45 1 10.2969 -0.9596 -1.3636 46 1 10.1026 -2.7194 -1.5474 47 1 13.0189 -4.4162 -3.1494 48 1 12.0889 -0.2626 -2.7130 49 1 12.4471 -1.1175 -4.3074 50 1 10.1986 -0.3707 -5.2134 51 1 9.8405 0.4847 -3.6191 52 1 3.6840 -1.2464 -0.9257 53 1 3.4631 -2.6895 0.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324125852.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:01 Heat of formation + Delta-G solvation = -72.242974 kcal Electronic energy + Delta-G solvation = -30125.364786 eV Core-core repulsion = 26189.725889 eV Total energy + Delta-G solvation = -3935.638898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05191 -40.17906 -39.05029 -38.57727 -37.10105 -35.18384 -33.98799 -33.77759 -32.24089 -29.00612 -28.01603 -27.77037 -27.21563 -26.67062 -23.98612 -23.55478 -22.96671 -21.55955 -21.28589 -20.74097 -20.35354 -18.89175 -18.12410 -17.86902 -17.07508 -16.75527 -16.62147 -16.45601 -16.02916 -15.69359 -15.53292 -15.38689 -15.27023 -14.96552 -14.72356 -14.41614 -14.07023 -13.97282 -13.89121 -13.65902 -13.39528 -13.20762 -13.01402 -12.98497 -12.80136 -12.77736 -12.53899 -12.41038 -12.22018 -12.05107 -12.04846 -11.87456 -11.76556 -11.48766 -11.41504 -11.27133 -11.02665 -10.90826 -10.48764 -10.27608 -10.13137 -9.90411 -9.77533 -8.13283 -6.25841 0.31490 1.31536 1.40632 1.43325 1.51360 2.11352 2.41376 2.50275 3.15541 3.26602 3.52706 3.64619 3.80505 3.90539 4.09217 4.13657 4.17781 4.18864 4.21850 4.36618 4.49176 4.51399 4.58940 4.59081 4.66268 4.69902 4.79467 4.80725 4.84857 4.85712 4.91520 4.98260 5.01059 5.02569 5.04219 5.08921 5.13238 5.19344 5.22745 5.26061 5.32286 5.38558 5.44038 5.54964 5.56094 5.57417 5.59293 5.66391 5.75479 6.00212 6.29922 6.34672 6.72429 6.80970 6.97966 7.43914 8.94686 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002507 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.063271 B =11164.598312 C =11382.746697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.097 4.097 6 H 0.066 0.934 7 C -0.111 4.111 8 C -0.124 4.124 9 C 0.041 3.959 10 N -0.574 5.574 11 C 0.508 3.492 12 O -0.547 6.547 13 C 0.498 3.502 14 O -0.535 6.535 15 N -0.670 5.670 16 C 0.176 3.824 17 C -0.001 4.001 18 C -0.510 4.510 19 H 0.054 0.946 20 C 0.028 3.972 21 N -0.903 5.903 22 Si 0.946 3.054 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.272 1.272 26 C -0.148 4.148 27 C -0.181 4.181 28 C 0.108 3.892 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.413 0.587 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.261 0.739 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.080 0.920 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.784 6.736 12.041 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.205 4.205 4 C -0.135 4.135 5 C -0.116 4.116 6 H 0.084 0.916 7 C -0.148 4.148 8 C -0.162 4.162 9 C -0.079 4.079 10 N -0.306 5.306 11 C 0.290 3.710 12 O -0.425 6.425 13 C 0.280 3.720 14 O -0.415 6.415 15 N -0.319 5.319 16 C 0.053 3.947 17 C -0.002 4.002 18 C -0.547 4.547 19 H 0.072 0.928 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.772 3.228 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.196 1.196 26 C -0.186 4.186 27 C -0.218 4.218 28 C -0.013 4.013 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.153 0.847 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.102 0.898 51 H 0.109 0.891 52 H 0.099 0.901 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.546 6.615 12.343 24.865 hybrid contribution 0.441 -0.850 -1.171 1.513 sum -20.105 5.765 11.172 23.712 Atomic orbital electron populations 1.21803 0.94318 1.02029 1.01948 1.21195 0.96405 0.96223 0.98433 1.21873 1.00439 0.96312 1.01894 1.21597 0.92435 1.01371 0.98146 1.21549 0.97043 0.98630 0.94355 0.91601 1.21660 0.94359 1.01984 0.96842 1.21865 0.96822 0.99543 0.97966 1.23289 1.04543 0.97609 0.82479 1.48056 1.08272 1.61851 1.12409 1.20022 0.87726 0.78758 0.84464 1.90716 1.74076 1.48956 1.28775 1.20384 0.88494 0.78398 0.84750 1.90292 1.73713 1.50632 1.26910 1.45930 1.08569 1.66454 1.10942 1.20905 0.76867 0.99431 0.97471 1.19070 0.99051 0.90279 0.91765 1.20688 1.09604 1.01253 1.23176 0.92772 1.25624 0.95678 1.00094 0.95888 1.70093 1.12659 1.37701 1.33527 0.85747 0.78287 0.79613 0.79178 1.20033 1.21253 1.19626 1.22449 0.91083 1.03537 1.01572 1.23001 1.00811 0.98220 0.99769 1.22034 0.77773 1.00922 1.00585 0.92041 0.92976 0.92286 0.92251 0.91867 0.93782 0.93081 0.90735 0.90261 0.90088 0.90699 0.89035 0.92924 0.90665 0.84684 0.75031 0.93058 0.93453 0.92986 0.90416 0.91658 0.89764 0.89064 0.90131 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.10 -1.45 2.79 -10.79 -0.03 -1.48 16 3 C -0.15 -2.22 8.95 71.98 0.64 -1.58 16 4 C -0.10 -1.18 4.16 30.60 0.13 -1.05 16 5 C -0.10 -1.55 2.20 -10.71 -0.02 -1.58 16 6 H 0.07 1.26 6.35 -2.39 -0.02 1.24 16 7 C -0.11 -1.55 5.17 30.73 0.16 -1.39 16 8 C -0.12 -2.28 6.11 30.78 0.19 -2.09 16 9 C 0.04 1.00 6.26 86.36 0.54 1.54 16 10 N -0.57 -15.51 2.97 -820.50 -2.44 -17.95 16 11 C 0.51 17.20 7.74 87.27 0.68 17.88 16 12 O -0.55 -20.38 15.94 -3.25 -0.05 -20.43 16 13 C 0.50 18.66 7.77 87.27 0.68 19.34 16 14 O -0.53 -20.93 13.11 -3.26 -0.04 -20.97 16 15 N -0.67 -26.44 5.50 -464.42 -2.56 -28.99 16 16 C 0.18 7.85 5.57 86.38 0.48 8.33 16 17 C 0.00 -0.04 1.38 -52.93 -0.07 -0.11 16 18 C -0.51 -26.76 8.83 25.60 0.23 -26.54 16 19 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 20 C 0.03 1.51 5.40 84.66 0.46 1.97 16 21 N -0.90 -50.26 12.87 21.45 0.28 -49.99 16 22 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C -0.15 -6.58 9.33 30.60 0.29 -6.30 16 27 C -0.18 -7.19 9.81 30.60 0.30 -6.89 16 28 C 0.11 2.30 5.31 86.36 0.46 2.76 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.01 6.47 -2.39 -0.02 0.99 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 0.78 6.46 -2.39 -0.02 0.76 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 4.11 3.78 -78.76 -0.30 3.81 16 44 H 0.41 15.86 7.87 -92.70 -0.73 15.13 16 45 H 0.05 2.20 7.94 -2.39 -0.02 2.18 16 46 H 0.05 2.42 8.12 -2.39 -0.02 2.40 16 47 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 48 H 0.08 3.22 8.08 -2.39 -0.02 3.20 16 49 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 50 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 51 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 52 H 0.08 1.97 5.66 -2.39 -0.01 1.96 16 53 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -60.04 414.36 2.84 -57.20 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.13 Total: 34.47 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.76 Total: 1.82 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.72 Total: -96.93 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.09 Total: -41.40 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -60.04 2.84 -57.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324125852.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.040 kcal (2) G-P(sol) polarization free energy of solvation -60.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds