Wall clock time and date at job start Tue Mar 31 2020 19:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 C 1.53000 * 109.46858 * 240.00016 * 2 1 3 5 5 C 1.53004 * 109.47305 * 293.31053 * 4 2 1 6 6 H 1.08994 * 109.58246 * 60.61544 * 5 4 2 7 7 C 1.53194 * 109.58107 * 300.19123 * 5 4 2 8 8 C 1.53046 * 109.30663 * 185.57889 * 7 5 4 9 9 C 1.53041 * 109.54214 * 61.36392 * 8 7 5 10 10 C 1.53194 * 109.31175 * 298.63787 * 9 8 7 11 11 N 1.46919 * 108.77795 * 54.63161 * 10 9 8 12 12 C 1.34774 * 120.63016 * 126.41282 * 11 10 9 13 13 O 1.21357 * 119.99842 * 174.93220 * 12 11 10 14 14 C 1.49442 * 120.00171 * 354.93815 * 12 11 10 15 15 O 1.21360 * 120.00064 * 82.84795 * 14 12 11 16 16 N 1.34778 * 120.00313 * 262.84947 * 14 12 11 17 17 C 1.46501 * 120.00144 * 184.99238 * 16 14 12 18 18 C 1.53001 * 109.46588 * 185.08958 * 17 16 14 19 19 C 1.50693 * 115.55248 * 304.81579 * 18 17 16 20 20 H 1.08004 * 119.99736 * 146.40019 * 19 18 17 21 21 C 1.37878 * 120.00616 * 326.40990 * 19 18 17 22 22 N 1.31506 * 120.00644 * 168.54153 * 21 19 18 23 23 Si 1.86803 * 119.99219 * 348.54289 * 21 19 18 24 24 H 1.48496 * 109.47242 * 92.12979 * 23 21 19 25 25 H 1.48503 * 109.46690 * 212.12616 * 23 21 19 26 26 H 1.48500 * 109.47459 * 332.12591 * 23 21 19 27 27 C 1.53002 * 117.49350 * 159.14980 * 18 17 16 28 28 C 1.53003 * 117.49676 * 90.49334 * 18 17 16 29 29 H 1.09003 * 109.47637 * 175.91779 * 1 2 3 30 30 H 1.09007 * 109.47378 * 295.91666 * 1 2 3 31 31 H 1.09005 * 109.47356 * 55.91424 * 1 2 3 32 32 H 1.08995 * 109.47143 * 120.00199 * 2 1 3 33 33 H 1.08994 * 109.46921 * 60.00308 * 3 2 1 34 34 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46850 * 300.00411 * 3 2 1 36 36 H 1.09002 * 109.47395 * 53.31425 * 4 2 1 37 37 H 1.09005 * 109.46932 * 173.31184 * 4 2 1 38 38 H 1.09005 * 109.49677 * 305.52317 * 7 5 4 39 39 H 1.08997 * 109.50157 * 65.62912 * 7 5 4 40 40 H 1.09002 * 109.46159 * 301.34261 * 8 7 5 41 41 H 1.08995 * 109.45759 * 181.38529 * 8 7 5 42 42 H 1.09000 * 109.49837 * 178.68245 * 9 8 7 43 43 H 1.08999 * 109.49518 * 58.58226 * 9 8 7 44 44 H 1.09006 * 109.58090 * 294.84361 * 10 9 8 45 45 H 1.08993 * 109.58303 * 174.42335 * 10 9 8 46 46 H 0.96998 * 119.99082 * 4.99543 * 16 14 12 47 47 H 1.09000 * 109.47236 * 305.08437 * 17 16 14 48 48 H 1.08999 * 109.46704 * 65.09204 * 17 16 14 49 49 H 0.96997 * 120.00157 * 179.97438 * 22 21 19 50 50 H 1.08997 * 117.50197 * 359.97438 * 27 18 17 51 51 H 1.09008 * 117.49813 * 145.01848 * 27 18 17 52 52 H 1.08999 * 117.49450 * 214.97131 * 28 18 17 53 53 H 1.08991 * 117.50083 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6717 -2.2041 -1.1681 6 1 0.5880 -2.3092 -1.1171 7 6 2.3100 -2.8241 0.0789 8 6 2.0550 -4.3332 0.0808 9 6 2.7000 -4.9629 -1.1560 10 6 2.0662 -4.3670 -2.4169 11 7 2.1791 -2.9034 -2.3565 12 6 2.7371 -2.2152 -3.3722 13 8 2.7419 -1.0018 -3.3526 14 6 3.3498 -2.9464 -4.5225 15 8 2.6497 -3.3456 -5.4299 16 7 4.6798 -3.1624 -4.5524 17 6 5.2952 -3.7812 -5.7291 18 6 6.7806 -4.0279 -5.4573 19 6 7.5742 -2.8178 -5.0371 20 1 8.3931 -2.9241 -4.3410 21 6 7.2549 -1.5747 -5.5411 22 7 7.7883 -0.4945 -5.0139 23 14 6.0644 -1.4252 -6.9728 24 1 4.6852 -1.2443 -6.4530 25 1 6.4370 -0.2538 -7.8060 26 1 6.1247 -2.6586 -7.7977 27 6 7.4914 -5.0754 -6.3166 28 6 7.1732 -5.3761 -4.8498 29 1 -0.3634 -1.0251 -0.0732 30 1 -0.3634 0.4492 0.9244 31 1 -0.3634 0.5760 -0.8511 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.5821 -0.2812 -2.1352 37 1 3.1233 -0.6188 -1.3111 38 1 3.3838 -2.6366 0.0694 39 1 1.8704 -2.3798 0.9718 40 1 0.9812 -4.5201 0.0652 41 1 2.4869 -4.7733 0.9795 42 1 2.5381 -6.0407 -1.1419 43 1 3.7700 -4.7552 -1.1538 44 1 1.0149 -4.6507 -2.4664 45 1 2.5887 -4.7378 -3.2986 46 1 5.2294 -2.9082 -3.7946 47 1 4.8021 -4.7300 -5.9404 48 1 5.1881 -3.1170 -6.5866 49 1 7.5639 0.3799 -5.3687 50 1 6.9008 -5.5891 -7.0751 51 1 8.5333 -4.8895 -6.5776 52 1 8.0058 -5.3878 -4.1465 53 1 6.3733 -6.0872 -4.6433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324174591.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:15 Heat of formation + Delta-G solvation = -54.682252 kcal Electronic energy + Delta-G solvation = -31626.109410 eV Core-core repulsion = 27691.232002 eV Total energy + Delta-G solvation = -3934.877407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.28192 -40.53209 -38.90175 -38.50872 -37.13730 -35.28518 -34.40219 -33.97660 -32.48289 -29.46483 -28.25177 -28.02279 -27.39679 -25.90970 -24.92619 -23.26977 -22.98678 -21.79428 -21.30251 -20.84050 -20.43693 -19.08814 -18.28911 -18.07842 -17.57907 -17.40068 -16.64114 -16.28173 -15.99820 -15.64299 -15.53664 -15.35544 -15.17250 -14.85529 -14.82116 -14.61808 -14.40490 -14.25335 -14.16500 -14.03269 -13.95142 -13.16110 -13.09395 -12.93073 -12.79926 -12.63953 -12.57708 -12.32342 -12.14462 -11.94064 -11.88392 -11.79702 -11.69037 -11.61851 -11.49159 -11.40333 -11.30529 -11.27368 -10.83222 -10.51831 -10.10387 -10.05840 -9.78422 -8.43420 -6.36972 0.87895 1.02321 1.22367 1.26556 1.32684 1.44887 2.19461 2.36566 2.81299 3.25023 3.45323 3.64041 3.75547 3.87752 3.90355 3.99613 4.07854 4.09759 4.11922 4.17272 4.22136 4.38609 4.41086 4.43939 4.46413 4.62706 4.70290 4.73998 4.78113 4.82810 4.89489 4.91902 4.94129 4.94974 5.03527 5.05104 5.09157 5.13788 5.16024 5.20504 5.24401 5.25615 5.28202 5.42597 5.44397 5.53423 5.53867 5.59695 5.64767 5.98532 6.16951 6.26475 6.64559 6.67618 6.74847 7.23518 8.71381 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004190 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.853313 B = 6680.817511 C = 7682.499664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.143 3.857 6 H 0.097 0.903 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.098 3.902 11 N -0.582 5.582 12 C 0.513 3.487 13 O -0.535 6.535 14 C 0.505 3.495 15 O -0.559 6.559 16 N -0.677 5.677 17 C 0.138 3.862 18 C -0.041 4.041 19 C -0.478 4.478 20 H 0.052 0.948 21 C 0.047 3.953 22 N -0.925 5.925 23 Si 0.928 3.072 24 H -0.295 1.295 25 H -0.308 1.308 26 H -0.242 1.242 27 C -0.188 4.188 28 C -0.156 4.156 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.415 0.585 47 H 0.088 0.912 48 H 0.039 0.961 49 H 0.265 0.735 50 H 0.096 0.904 51 H 0.084 0.916 52 H 0.084 0.916 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.103 -9.447 14.118 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.146 4.146 5 C 0.042 3.958 6 H 0.115 0.885 7 C -0.167 4.167 8 C -0.152 4.152 9 C -0.170 4.170 10 C -0.024 4.024 11 N -0.316 5.316 12 C 0.295 3.705 13 O -0.412 6.412 14 C 0.286 3.714 15 O -0.438 6.438 16 N -0.328 5.328 17 C 0.015 3.985 18 C -0.042 4.042 19 C -0.516 4.516 20 H 0.070 0.930 21 C -0.153 4.153 22 N -0.563 5.563 23 Si 0.760 3.240 24 H -0.223 1.223 25 H -0.237 1.237 26 H -0.167 1.167 27 C -0.226 4.226 28 C -0.193 4.193 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.252 0.748 47 H 0.106 0.894 48 H 0.056 0.944 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.102 0.898 52 H 0.103 0.897 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.555 -8.888 13.481 22.421 hybrid contribution 0.324 1.119 -1.076 1.585 sum -15.231 -7.769 12.406 21.125 Atomic orbital electron populations 1.21869 0.94140 1.02270 1.01888 1.21290 0.96712 0.95945 0.97710 1.21810 1.00385 0.96510 1.01663 1.22089 1.00342 0.93799 0.98327 1.21713 0.99036 0.91638 0.83447 0.88520 1.22074 1.00890 0.96966 0.96748 1.21536 1.01984 0.93709 0.97928 1.21947 1.00081 1.01583 0.93341 1.22108 1.03202 0.76887 1.00181 1.48300 1.57673 1.08863 1.16799 1.20286 0.79670 0.87571 0.82995 1.90846 1.59309 1.13971 1.77110 1.20595 0.83492 0.79257 0.88027 1.90715 1.62210 1.51544 1.39357 1.46007 1.06402 1.59424 1.20995 1.21416 0.93250 0.97399 0.86387 1.19391 0.89984 0.90698 1.04112 1.20450 1.15473 0.89770 1.25888 0.93030 1.25389 0.96842 0.95615 0.97493 1.69975 1.46202 0.98583 1.41585 0.86355 0.78853 0.76789 0.81996 1.22281 1.23704 1.16729 1.23151 1.01318 1.04210 0.93928 1.22898 1.03095 0.97789 0.95548 0.91571 0.91232 0.94001 0.89386 0.90955 0.93989 0.94139 0.91844 0.94237 0.92790 0.87972 0.89994 0.89707 0.87933 0.92378 0.88475 0.91262 0.74816 0.89375 0.94355 0.92573 0.88592 0.89777 0.89706 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.06 71.98 0.65 -1.70 16 2 C -0.10 -1.95 2.72 -10.79 -0.03 -1.98 16 3 C -0.15 -3.21 9.19 71.98 0.66 -2.55 16 4 C -0.11 -2.96 2.62 30.60 0.08 -2.88 16 5 C 0.14 3.13 2.79 44.98 0.13 3.26 16 6 H 0.10 1.77 6.57 -2.39 -0.02 1.75 16 7 C -0.13 -2.08 4.85 30.67 0.15 -1.93 16 8 C -0.11 -1.36 5.88 30.62 0.18 -1.18 16 9 C -0.13 -1.99 6.08 30.67 0.19 -1.81 16 10 C 0.10 2.03 6.36 86.36 0.55 2.58 16 11 N -0.58 -15.91 2.97 -796.60 -2.37 -18.28 16 12 C 0.51 19.40 7.39 87.27 0.65 20.05 16 13 O -0.54 -23.53 12.64 -3.27 -0.04 -23.57 16 14 C 0.51 20.89 5.65 87.27 0.49 21.38 16 15 O -0.56 -25.18 16.98 -3.28 -0.06 -25.23 16 16 N -0.68 -28.00 4.68 -464.40 -2.17 -30.18 16 17 C 0.14 5.75 4.37 86.38 0.38 6.13 16 18 C -0.04 -1.71 1.54 -52.93 -0.08 -1.80 16 19 C -0.48 -25.12 8.87 25.60 0.23 -24.89 16 20 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 21 C 0.05 2.65 5.34 84.66 0.45 3.10 16 22 N -0.93 -56.31 13.96 21.45 0.30 -56.01 16 23 Si 0.93 47.59 23.61 68.60 1.62 49.21 16 24 H -0.29 -16.04 7.03 99.48 0.70 -15.34 16 25 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 26 H -0.24 -11.38 6.46 99.48 0.64 -10.74 16 27 C -0.19 -6.79 9.96 30.62 0.30 -6.48 16 28 C -0.16 -5.27 9.93 30.62 0.30 -4.97 16 29 H 0.07 0.91 6.46 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 1.44 6.22 -2.39 -0.01 1.42 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 2.16 6.17 -2.39 -0.01 2.15 16 37 H 0.04 1.33 7.29 -2.38 -0.02 1.32 16 38 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 1.21 6.61 -2.39 -0.02 1.19 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.07 1.71 6.25 -2.39 -0.01 1.69 16 46 H 0.41 17.35 7.96 -92.71 -0.74 16.61 16 47 H 0.09 3.23 8.05 -2.39 -0.02 3.21 16 48 H 0.04 1.82 2.45 -2.39 -0.01 1.81 16 49 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 51 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 52 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 53 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -70.92 400.60 2.65 -68.27 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.09 Total: 31.45 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.28 Total: 4.33 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -4.24 Total: -104.46 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.10 Total: -48.81 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.62 Total: 49.21 kcal Total: -70.92 2.65 -68.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324174591.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.589 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds