Wall clock time and date at job start Tue Mar 31 2020 19:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47014 * 119.99421 * 2 1 3 5 5 C 1.53003 * 109.47101 * 65.29003 * 4 2 1 6 6 H 1.08995 * 109.70166 * 299.77691 * 5 4 2 7 7 C 1.53626 * 109.66241 * 60.37163 * 5 4 2 8 8 C 1.53041 * 109.24199 * 174.55268 * 7 5 4 9 9 C 1.53045 * 109.53430 * 298.50675 * 8 7 5 10 10 C 1.53188 * 109.31265 * 61.36603 * 9 8 7 11 11 N 1.46924 * 109.58699 * 179.41802 * 5 4 2 12 12 C 1.34779 * 120.63228 * 6.63312 * 11 5 4 13 13 O 1.21353 * 119.99969 * 354.85544 * 12 11 5 14 14 C 1.49448 * 120.00210 * 175.13531 * 12 11 5 15 15 O 1.21354 * 119.99549 * 275.56180 * 14 12 11 16 16 N 1.34775 * 120.00415 * 95.56186 * 14 12 11 17 17 C 1.46500 * 120.00236 * 185.01283 * 16 14 12 18 18 C 1.53002 * 109.47066 * 184.99761 * 17 16 14 19 19 C 1.50702 * 115.54364 * 278.25675 * 18 17 16 20 20 H 1.08000 * 120.00111 * 143.21877 * 19 18 17 21 21 C 1.37875 * 120.00375 * 323.20890 * 19 18 17 22 22 N 1.31510 * 120.00573 * 171.28651 * 21 19 18 23 23 Si 1.86802 * 119.99710 * 351.28586 * 21 19 18 24 24 H 1.48501 * 109.47356 * 96.06686 * 23 21 19 25 25 H 1.48500 * 109.47321 * 216.06233 * 23 21 19 26 26 H 1.48498 * 109.47202 * 336.06535 * 23 21 19 27 27 C 1.52997 * 117.50259 * 132.55022 * 18 17 16 28 28 C 1.52998 * 117.50005 * 63.92103 * 18 17 16 29 29 H 1.08997 * 109.47587 * 184.32444 * 1 2 3 30 30 H 1.08994 * 109.47501 * 304.32865 * 1 2 3 31 31 H 1.09008 * 109.46906 * 64.32999 * 1 2 3 32 32 H 1.08998 * 109.47546 * 239.99522 * 2 1 3 33 33 H 1.08997 * 109.47519 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46619 * 299.99310 * 3 2 1 35 35 H 1.08998 * 109.47231 * 59.99329 * 3 2 1 36 36 H 1.09003 * 109.47271 * 305.29757 * 4 2 1 37 37 H 1.09005 * 109.47548 * 185.29370 * 4 2 1 38 38 H 1.09001 * 109.63344 * 54.55318 * 7 5 4 39 39 H 1.09003 * 109.45731 * 294.43433 * 7 5 4 40 40 H 1.09001 * 109.45533 * 178.49331 * 8 7 5 41 41 H 1.08996 * 109.45090 * 58.51806 * 8 7 5 42 42 H 1.09004 * 109.49879 * 301.41307 * 9 8 7 43 43 H 1.09002 * 109.52356 * 181.33828 * 9 8 7 44 44 H 1.09005 * 109.58691 * 185.57648 * 10 9 8 45 45 H 1.09002 * 109.58878 * 65.15434 * 10 9 8 46 46 H 0.97000 * 119.99492 * 5.00444 * 16 14 12 47 47 H 1.09003 * 109.46719 * 304.99106 * 17 16 14 48 48 H 1.08992 * 109.47264 * 64.99315 * 17 16 14 49 49 H 0.96994 * 120.00486 * 180.02562 * 22 21 19 50 50 H 1.09001 * 117.49470 * 359.97438 * 27 18 17 51 51 H 1.08993 * 117.49893 * 145.01847 * 27 18 17 52 52 H 1.08994 * 117.49792 * 214.97375 * 28 18 17 53 53 H 1.09000 * 117.50017 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6414 -2.1969 1.1847 6 1 0.5557 -2.2827 1.1399 7 6 2.2651 -2.8468 -0.0598 8 6 1.9745 -4.3493 -0.0434 9 6 2.6095 -4.9798 1.1982 10 6 1.9949 -4.3547 2.4545 11 7 2.1419 -2.8949 2.3768 12 6 2.7199 -2.2085 3.3824 13 8 2.9155 -1.0162 3.2694 14 6 3.1256 -2.9169 4.6343 15 8 2.3133 -3.1030 5.5165 16 7 4.3934 -3.3490 4.7835 17 6 4.7645 -4.1386 5.9603 18 6 6.2732 -4.3927 5.9490 19 6 6.7335 -5.5337 5.0787 20 1 7.6638 -5.4574 4.5355 21 6 5.9671 -6.6752 4.9761 22 7 6.2758 -7.5973 4.0906 23 14 4.4900 -6.9121 6.0948 24 1 3.2589 -6.4757 5.3884 25 1 4.3696 -8.3468 6.4586 26 1 4.6672 -6.1022 7.3268 27 6 7.0423 -4.1389 7.2470 28 6 7.1952 -3.1774 6.0666 29 1 -0.3634 -1.0247 0.0775 30 1 -0.3634 0.5795 0.8486 31 1 -0.3633 0.4452 -0.9263 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6012 -0.2649 2.1367 37 1 3.1258 -0.6398 1.2981 38 1 3.3429 -2.6845 -0.0564 39 1 1.8331 -2.4025 -0.9565 40 1 2.3926 -4.8097 -0.9386 41 1 0.8968 -4.5103 -0.0215 42 1 3.6842 -4.7975 1.1897 43 1 2.4227 -6.0537 1.1974 44 1 2.5120 -4.7276 3.3386 45 1 0.9374 -4.6130 2.5112 46 1 5.0602 -3.1372 4.1115 47 1 4.4949 -3.5922 6.8642 48 1 4.2354 -5.0913 5.9402 49 1 5.7364 -8.4001 4.0181 50 1 6.4734 -3.7904 8.1090 51 1 7.8813 -4.7972 7.4719 52 1 8.1350 -3.2034 5.5151 53 1 6.7270 -2.1968 6.1517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324174592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:18 Heat of formation + Delta-G solvation = -54.650251 kcal Electronic energy + Delta-G solvation = -31496.655051 eV Core-core repulsion = 27561.779031 eV Total energy + Delta-G solvation = -3934.876020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30428 -40.56391 -38.94962 -38.50300 -37.14129 -35.29293 -34.37684 -34.02440 -32.49101 -29.58907 -28.31243 -27.99608 -27.36929 -25.91923 -24.97756 -23.36911 -23.01432 -21.84814 -21.36221 -20.82128 -20.50170 -19.08675 -18.34684 -17.89708 -17.85220 -17.23301 -16.62317 -16.38572 -16.00207 -15.73196 -15.55708 -15.32873 -15.17834 -14.94474 -14.89530 -14.59215 -14.36833 -14.20818 -14.17413 -14.08964 -13.92517 -13.14621 -13.03128 -12.93357 -12.78160 -12.71922 -12.53774 -12.32043 -12.19971 -12.04519 -11.95809 -11.81526 -11.72088 -11.64358 -11.49911 -11.36194 -11.29339 -11.26107 -10.85986 -10.52363 -10.20660 -10.07912 -9.78032 -8.36939 -6.34244 0.88517 0.91582 1.22807 1.33637 1.38255 1.47769 2.22548 2.24512 2.82686 3.19877 3.42438 3.59438 3.73154 3.82527 3.85532 3.92649 4.00865 4.06689 4.12478 4.16914 4.18634 4.32104 4.37500 4.38361 4.44182 4.58453 4.62204 4.72110 4.76761 4.84148 4.87695 4.89236 4.90945 4.96216 4.97872 5.06906 5.08624 5.11138 5.13973 5.18283 5.19381 5.21072 5.30291 5.38783 5.44862 5.48081 5.54979 5.61874 5.64011 5.92772 6.13598 6.26916 6.62168 6.65022 6.72353 7.26525 8.78295 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.003836 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.441737 B = 7297.595067 C = 8134.999268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.097 4.097 5 C 0.140 3.860 6 H 0.096 0.904 7 C -0.126 4.126 8 C -0.113 4.113 9 C -0.133 4.133 10 C 0.101 3.899 11 N -0.582 5.582 12 C 0.519 3.481 13 O -0.523 6.523 14 C 0.505 3.495 15 O -0.558 6.558 16 N -0.682 5.682 17 C 0.152 3.848 18 C -0.037 4.037 19 C -0.481 4.481 20 H 0.048 0.952 21 C 0.040 3.960 22 N -0.927 5.927 23 Si 0.934 3.066 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.251 1.251 27 C -0.186 4.186 28 C -0.163 4.163 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.415 0.585 47 H 0.070 0.930 48 H 0.039 0.961 49 H 0.268 0.732 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.088 0.912 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 10.798 -11.075 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.135 4.135 5 C 0.039 3.961 6 H 0.113 0.887 7 C -0.164 4.164 8 C -0.150 4.150 9 C -0.171 4.171 10 C -0.022 4.022 11 N -0.315 5.315 12 C 0.300 3.700 13 O -0.400 6.400 14 C 0.286 3.714 15 O -0.437 6.437 16 N -0.333 5.333 17 C 0.029 3.971 18 C -0.038 4.038 19 C -0.518 4.518 20 H 0.067 0.933 21 C -0.160 4.160 22 N -0.566 5.566 23 Si 0.765 3.235 24 H -0.211 1.211 25 H -0.229 1.229 26 H -0.176 1.176 27 C -0.224 4.224 28 C -0.200 4.200 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.252 0.748 47 H 0.088 0.912 48 H 0.057 0.943 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.106 0.894 52 H 0.106 0.894 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.983 11.095 -10.599 19.468 hybrid contribution 0.038 -0.626 0.698 0.938 sum -11.945 10.469 -9.901 18.716 Atomic orbital electron populations 1.21892 0.94580 1.02091 1.01919 1.21315 0.96424 0.96340 0.97846 1.21783 1.00654 0.95992 1.01681 1.22031 1.01054 0.92525 0.97869 1.21901 0.98986 0.92269 0.82949 0.88669 1.22131 1.01186 0.95891 0.97225 1.21527 1.01738 0.94655 0.97086 1.21904 1.00240 1.00850 0.94123 1.21956 1.02701 0.77957 0.99537 1.48253 1.57333 1.08359 1.17593 1.20065 0.79122 0.87404 0.83371 1.90837 1.55332 1.14484 1.79350 1.20716 0.83233 0.78777 0.88645 1.90741 1.52338 1.57343 1.43231 1.46003 1.09982 1.51807 1.25537 1.21426 0.95489 0.92835 0.87330 1.19413 0.88203 0.97255 0.98976 1.20426 1.07023 0.98376 1.25987 0.93330 1.25491 0.99470 0.95659 0.95361 1.69977 1.41522 1.10370 1.34691 0.86095 0.80168 0.75587 0.81609 1.21063 1.22907 1.17623 1.23189 1.03733 1.03425 0.92042 1.22827 1.01233 0.93551 1.02388 0.91986 0.93705 0.91461 0.89651 0.93391 0.91378 0.93767 0.92209 0.92622 0.92375 0.87614 0.89893 0.89975 0.92743 0.89582 0.92799 0.88660 0.74790 0.91175 0.94341 0.92227 0.88907 0.89403 0.89387 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.05 71.98 0.65 -1.45 16 2 C -0.10 -1.67 2.72 -10.80 -0.03 -1.70 16 3 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 4 C -0.10 -2.26 2.61 30.60 0.08 -2.18 16 5 C 0.14 2.96 2.78 45.12 0.13 3.09 16 6 H 0.10 1.73 6.51 -2.39 -0.02 1.71 16 7 C -0.13 -2.13 4.89 30.82 0.15 -1.98 16 8 C -0.11 -1.83 5.88 30.62 0.18 -1.65 16 9 C -0.13 -3.08 6.08 30.67 0.19 -2.90 16 10 C 0.10 2.72 6.32 86.36 0.55 3.27 16 11 N -0.58 -16.22 2.97 -795.78 -2.36 -18.58 16 12 C 0.52 17.82 7.46 87.27 0.65 18.47 16 13 O -0.52 -18.95 12.50 -3.26 -0.04 -18.99 16 14 C 0.50 19.75 5.62 87.27 0.49 20.24 16 15 O -0.56 -24.85 17.08 -3.26 -0.06 -24.90 16 16 N -0.68 -26.39 5.49 -464.41 -2.55 -28.94 16 17 C 0.15 6.39 4.41 86.38 0.38 6.77 16 18 C -0.04 -1.60 1.27 -52.93 -0.07 -1.66 16 19 C -0.48 -25.03 9.59 25.60 0.25 -24.79 16 20 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 21 C 0.04 2.16 5.44 84.65 0.46 2.62 16 22 N -0.93 -53.44 13.96 21.45 0.30 -53.14 16 23 Si 0.93 44.18 24.33 68.60 1.67 45.84 16 24 H -0.28 -13.30 7.00 99.48 0.70 -12.61 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.25 -11.27 6.38 99.48 0.63 -10.64 16 27 C -0.19 -6.98 9.88 30.60 0.30 -6.68 16 28 C -0.16 -5.87 9.89 30.60 0.30 -5.56 16 29 H 0.06 0.79 6.39 -2.39 -0.02 0.78 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 1.18 6.31 -2.39 -0.02 1.17 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.72 6.48 -2.39 -0.02 1.70 16 37 H 0.06 1.54 7.01 -2.38 -0.02 1.53 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.24 6.66 -2.39 -0.02 1.23 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.83 6.37 -2.38 -0.02 1.81 16 45 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.42 15.11 8.48 -92.71 -0.79 14.33 16 47 H 0.07 2.84 7.89 -2.39 -0.02 2.82 16 48 H 0.04 1.80 1.78 -2.39 0.00 1.79 16 49 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.09 3.11 8.07 -2.39 -0.02 3.09 16 51 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 52 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 53 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -64.68 402.18 2.31 -62.37 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.03 Total: 34.22 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.32 Total: 2.12 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -4.61 Total: -100.67 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.10 Total: -43.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.84 kcal Total: -64.68 2.31 -62.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324174592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.720 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds