Wall clock time and date at job start Tue Mar 31 2020 20:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47190 * 2 1 4 4 C 1.50703 * 120.00063 * 88.50554 * 3 2 1 5 5 C 1.32995 * 120.00149 * 268.50805 * 3 2 1 6 6 C 1.47100 * 119.99801 * 8.21251 * 5 3 2 7 7 O 1.21616 * 120.00407 * 6.05844 * 6 5 3 8 8 N 1.34775 * 120.00046 * 186.06169 * 6 5 3 9 9 C 1.46505 * 120.00016 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47125 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.32906 * 304.20987 * 10 9 8 12 12 C 1.54605 * 110.36849 * 181.85122 * 10 9 8 13 13 C 1.53993 * 103.88978 * 217.26976 * 12 10 9 14 14 C 1.53987 * 104.56877 * 0.14794 * 13 12 10 15 15 O 1.44476 * 110.36616 * 66.45395 * 10 9 8 16 16 C 1.52399 * 110.28271 * 241.63417 * 13 12 10 17 17 C 1.53285 * 109.44505 * 297.23134 * 16 13 12 18 18 N 1.46922 * 108.84979 * 306.25028 * 17 16 13 19 19 C 1.36939 * 120.59354 * 234.26019 * 18 17 16 20 20 H 1.08001 * 119.99947 * 31.01331 * 19 18 17 21 21 C 1.38813 * 120.00005 * 211.00193 * 19 18 17 22 22 N 1.31621 * 119.99848 * 21.06442 * 21 19 18 23 23 Si 1.86799 * 119.99943 * 201.05591 * 21 19 18 24 24 H 1.48505 * 109.46909 * 90.00511 * 23 21 19 25 25 H 1.48500 * 109.47054 * 210.00316 * 23 21 19 26 26 H 1.48503 * 109.47483 * 330.00563 * 23 21 19 27 27 C 1.47230 * 118.61399 * 54.13280 * 18 17 16 28 28 C 1.52405 * 110.27702 * 118.65653 * 13 12 10 29 29 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47041 * 300.00685 * 1 2 3 31 31 H 1.09000 * 109.46822 * 59.99828 * 1 2 3 32 32 H 1.08997 * 109.46841 * 239.99809 * 2 1 3 33 33 H 1.09000 * 109.46822 * 120.00172 * 2 1 3 34 34 H 1.08998 * 109.47558 * 269.99772 * 4 3 2 35 35 H 1.08997 * 109.46936 * 30.00530 * 4 3 2 36 36 H 1.09010 * 109.46946 * 150.00057 * 4 3 2 37 37 H 1.07994 * 120.00189 * 188.21456 * 5 3 2 38 38 H 0.96995 * 120.00112 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.46952 * 60.00081 * 9 8 6 40 40 H 1.08995 * 109.46857 * 299.99531 * 9 8 6 41 41 H 1.09000 * 110.54126 * 98.67053 * 12 10 9 42 42 H 1.08998 * 110.54387 * 335.86882 * 12 10 9 43 43 H 1.09008 * 110.38691 * 142.42239 * 14 13 12 44 44 H 1.08996 * 110.39127 * 264.80881 * 14 13 12 45 45 H 1.09003 * 109.47751 * 177.23747 * 16 13 12 46 46 H 1.08997 * 109.47792 * 57.22663 * 16 13 12 47 47 H 1.09003 * 109.59441 * 66.09741 * 17 16 13 48 48 H 1.08994 * 109.59080 * 186.39976 * 17 16 13 49 49 H 0.97004 * 119.99478 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.53837 * 186.09150 * 27 18 17 51 51 H 1.08997 * 109.69085 * 65.76847 * 27 18 17 52 52 H 1.08993 * 109.47603 * 182.76203 * 28 13 12 53 53 H 1.09006 * 109.47768 * 302.77584 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2515 2.1425 1.3047 5 6 2.2823 2.0377 -1.1514 6 6 1.9005 1.4046 -2.4231 7 8 1.2592 0.3713 -2.4195 8 7 2.2615 1.9696 -3.5922 9 6 1.8817 1.3387 -4.8588 10 6 2.4110 2.1763 -6.0246 11 1 2.0518 3.2025 -5.9474 12 6 1.9819 1.5535 -7.3731 13 6 3.1983 1.7816 -8.2894 14 6 4.2230 2.5086 -7.3991 15 8 3.8553 2.1494 -6.0481 16 6 2.8108 2.6599 -9.4730 17 6 1.7496 1.9425 -10.3150 18 7 2.2505 0.6087 -10.6739 19 6 2.2928 0.2092 -11.9830 20 1 2.4527 0.9369 -12.7648 21 6 2.1305 -1.1313 -12.3052 22 7 1.5391 -1.9451 -11.4565 23 14 2.7512 -1.7799 -13.9433 24 1 4.1544 -2.2424 -13.7929 25 1 1.9000 -2.9154 -14.3806 26 1 2.6928 -0.6977 -14.9585 27 6 2.7076 -0.2860 -9.5977 28 6 3.7623 0.4465 -8.7607 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3358 2.6590 1.5925 35 1 2.5208 1.4225 2.0774 36 1 3.0565 2.8682 1.1877 37 1 2.7656 3.0035 -1.1527 38 1 2.7728 2.7938 -3.5951 39 1 0.7955 1.2748 -4.9214 40 1 2.3081 0.3368 -4.9078 41 1 1.1041 2.0647 -7.7683 42 1 1.7852 0.4877 -7.2568 43 1 5.2326 2.1635 -7.6224 44 1 4.1498 3.5871 -7.5387 45 1 3.6913 2.8532 -10.0858 46 1 2.4075 3.6045 -9.1081 47 1 0.8300 1.8446 -9.7380 48 1 1.5534 2.5154 -11.2212 49 1 1.4254 -2.8818 -11.6818 50 1 3.1453 -1.1848 -10.0320 51 1 1.8638 -0.5597 -8.9644 52 1 4.6507 0.6212 -9.3675 53 1 4.0267 -0.1620 -7.8958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324354952.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:55 Heat of formation + Delta-G solvation = -76.949630 kcal Electronic energy + Delta-G solvation = -29878.016435 eV Core-core repulsion = 25942.173442 eV Total energy + Delta-G solvation = -3935.842993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50023 -40.75954 -38.33429 -37.09919 -35.67173 -34.99935 -32.73326 -32.29009 -31.69539 -31.39035 -29.10333 -28.34744 -26.62409 -25.54428 -24.53896 -23.95167 -22.70256 -22.38124 -22.02696 -19.77403 -19.64489 -18.48679 -17.97938 -17.46670 -16.90827 -16.72371 -16.51434 -16.00565 -15.88801 -15.66676 -15.60878 -15.34768 -14.87763 -14.82539 -14.62143 -14.44423 -14.01460 -13.83173 -13.69918 -13.67523 -13.42129 -13.19799 -13.11936 -13.02653 -12.86875 -12.80568 -12.62979 -12.42931 -12.19665 -12.14209 -11.97951 -11.89709 -11.83469 -11.74006 -11.52613 -11.09746 -11.02669 -10.62044 -10.52266 -10.51552 -10.19275 -9.80530 -8.64691 -7.89732 -5.35162 0.44408 1.44004 1.46032 1.54595 2.25851 2.35999 2.49661 2.88293 3.23049 3.53284 3.69548 3.75703 3.83229 3.87362 3.91355 4.03281 4.12877 4.22703 4.27895 4.42478 4.48817 4.50115 4.53946 4.57638 4.68198 4.69504 4.70328 4.71845 4.75312 4.83179 4.85810 4.86421 4.91286 5.00484 5.03853 5.06037 5.12288 5.22943 5.23796 5.29159 5.33224 5.36825 5.40492 5.45113 5.49902 5.58707 5.65589 5.72379 5.72596 5.90031 6.38595 6.65662 7.13531 7.34479 7.85652 8.40216 9.15884 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002166 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.014061 B =12924.909012 C =13729.922264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.025 4.025 4 C -0.123 4.123 5 C -0.242 4.242 6 C 0.531 3.469 7 O -0.575 6.575 8 N -0.713 5.713 9 C 0.133 3.867 10 C 0.078 3.922 11 H 0.101 0.899 12 C -0.135 4.135 13 C -0.075 4.075 14 C 0.061 3.939 15 O -0.382 6.382 16 C -0.107 4.107 17 C 0.139 3.861 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.064 0.936 21 C -0.048 4.048 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.183 3.817 28 C -0.113 4.113 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.414 0.586 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.249 0.751 50 H 0.034 0.966 51 H -0.001 1.001 52 H 0.053 0.947 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 14.585 23.650 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.027 4.027 4 C -0.179 4.179 5 C -0.263 4.263 6 C 0.322 3.678 7 O -0.458 6.458 8 N -0.365 5.365 9 C 0.009 3.991 10 C 0.020 3.980 11 H 0.118 0.882 12 C -0.173 4.173 13 C -0.075 4.075 14 C -0.016 4.016 15 O -0.302 6.302 16 C -0.146 4.146 17 C 0.014 3.986 18 N -0.331 5.331 19 C -0.395 4.395 20 H 0.082 0.918 21 C -0.244 4.244 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.057 3.943 28 C -0.152 4.152 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.172 0.828 38 H 0.251 0.749 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.017 0.983 52 H 0.072 0.928 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.241 13.670 23.763 27.605 hybrid contribution 0.117 -0.887 -1.584 1.820 sum 3.358 12.783 22.178 25.818 Atomic orbital electron populations 1.21477 0.94370 1.01485 1.01112 1.20975 0.97119 0.93670 1.02771 1.22838 0.89057 0.94942 0.95874 1.21060 1.03654 1.00558 0.92628 1.22471 1.09687 1.03559 0.90551 1.19180 0.79218 0.83965 0.85412 1.90742 1.41759 1.25244 1.88020 1.45761 1.57031 1.28860 1.04807 1.21270 0.99633 0.96159 0.82063 1.23208 0.81790 0.99541 0.93421 0.88168 1.22931 0.98786 1.01479 0.94100 1.21294 0.95118 0.95552 0.95571 1.23552 0.98536 0.99386 0.80090 1.89112 1.20284 1.90956 1.29820 1.21826 0.99479 0.97639 0.95658 1.21118 0.94376 0.86094 0.97014 1.44305 1.72805 1.13357 1.02599 1.19439 1.42653 0.92523 0.84853 0.91805 1.25842 0.99320 0.98406 1.00867 1.70230 1.44005 1.04563 1.38834 0.85357 0.77588 0.77766 0.80309 1.21328 1.22329 1.19046 1.20514 0.93156 0.92311 0.88272 1.21910 0.98524 0.96317 0.98436 0.93098 0.91774 0.94109 0.91146 0.90501 0.89104 0.90214 0.89638 0.82808 0.74898 0.90488 0.93231 0.89608 0.92462 0.88995 0.89724 0.92149 0.89281 0.96638 0.93065 0.94223 0.94714 0.98289 0.92794 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.43 71.98 0.68 -1.85 16 2 C -0.11 -2.12 5.33 29.85 0.16 -1.96 16 3 C -0.03 -0.39 5.36 -17.62 -0.09 -0.49 16 4 C -0.12 -0.98 10.05 71.24 0.72 -0.27 16 5 C -0.24 -4.06 9.63 23.43 0.23 -3.83 16 6 C 0.53 12.75 7.60 86.57 0.66 13.41 16 7 O -0.58 -18.05 11.55 -4.08 -0.05 -18.09 16 8 N -0.71 -14.96 5.54 -466.71 -2.58 -17.54 16 9 C 0.13 3.29 5.29 86.38 0.46 3.75 16 10 C 0.08 1.76 3.34 31.14 0.10 1.87 16 11 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 12 C -0.13 -3.83 4.97 31.48 0.16 -3.67 16 13 C -0.07 -2.20 0.68 -51.91 -0.04 -2.24 16 14 C 0.06 1.42 6.72 72.32 0.49 1.91 16 15 O -0.38 -9.53 11.33 -148.98 -1.69 -11.22 16 16 C -0.11 -3.18 4.63 30.49 0.14 -3.04 16 17 C 0.14 5.51 6.19 86.39 0.54 6.05 16 18 N -0.61 -30.24 2.97 -697.98 -2.07 -32.31 16 19 C -0.26 -14.63 9.52 84.03 0.80 -13.83 16 20 H 0.06 3.45 7.91 -2.91 -0.02 3.43 16 21 C -0.05 -2.74 4.78 84.86 0.41 -2.33 16 22 N -0.93 -56.47 11.71 21.65 0.25 -56.21 16 23 Si 0.96 45.48 29.60 68.60 2.03 47.51 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.18 8.87 5.04 86.33 0.44 9.31 16 28 C -0.11 -4.21 4.63 30.49 0.14 -4.07 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 1.00 6.76 -2.39 -0.02 0.99 16 32 H 0.07 1.86 5.68 -2.39 -0.01 1.85 16 33 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.52 8.05 -2.39 -0.02 0.50 16 36 H 0.08 0.46 8.06 -2.38 -0.02 0.44 16 37 H 0.15 1.58 8.04 -2.91 -0.02 1.56 16 38 H 0.41 6.40 8.46 -92.71 -0.78 5.62 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 2.35 6.59 -2.39 -0.02 2.33 16 42 H 0.06 1.94 6.33 -2.39 -0.02 1.93 16 43 H 0.09 2.13 7.85 -2.38 -0.02 2.11 16 44 H 0.08 1.56 7.83 -2.39 -0.02 1.54 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 47 H 0.02 0.63 6.86 -2.39 -0.02 0.61 16 48 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 49 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 50 H 0.03 1.93 6.42 -2.39 -0.02 1.91 16 51 H 0.00 -0.05 6.87 -2.39 -0.02 -0.06 16 52 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -71.15 404.60 1.96 -69.19 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.10 Total: 19.95 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.97 Total: -1.27 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.40 Total: -106.07 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.74 Total: -29.31 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.15 1.96 -69.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324354952.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.762 kcal (2) G-P(sol) polarization free energy of solvation -71.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds