Wall clock time and date at job start Tue Mar 31 2020 20:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 C 1.50698 * 119.99975 * 274.99882 * 3 2 1 5 5 C 1.33001 * 120.00002 * 94.99653 * 3 2 1 6 6 C 1.47096 * 119.99843 * 182.60558 * 5 3 2 7 7 O 1.21616 * 120.00327 * 354.62859 * 6 5 3 8 8 N 1.34773 * 119.99888 * 174.63188 * 6 5 3 9 9 C 1.46501 * 120.00140 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47173 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.53928 * 61.39938 * 10 9 8 12 12 C 1.55107 * 110.60646 * 184.41543 * 10 9 8 13 13 C 1.54312 * 101.96970 * 155.14636 * 12 10 9 14 14 C 1.53602 * 104.68211 * 339.36280 * 13 12 10 15 15 O 1.43886 * 107.11438 * 357.91127 * 14 13 12 16 16 C 1.52425 * 110.05658 * 220.65137 * 13 12 10 17 17 C 1.53286 * 109.42471 * 178.09588 * 16 13 12 18 18 N 1.46939 * 108.72663 * 53.69566 * 17 16 13 19 19 C 1.36932 * 120.58976 * 125.80454 * 18 17 16 20 20 H 1.07996 * 119.99812 * 331.75240 * 19 18 17 21 21 C 1.38813 * 120.00056 * 151.75114 * 19 18 17 22 22 N 1.31623 * 119.99898 * 334.96532 * 21 19 18 23 23 Si 1.86801 * 120.00213 * 154.96406 * 21 19 18 24 24 H 1.48502 * 109.46763 * 265.01913 * 23 21 19 25 25 H 1.48500 * 109.46607 * 25.01310 * 23 21 19 26 26 H 1.48495 * 109.47225 * 145.01566 * 23 21 19 27 27 C 1.46931 * 118.81937 * 306.07296 * 18 17 16 28 28 C 1.52429 * 110.03950 * 98.04074 * 13 12 10 29 29 H 1.08996 * 109.47310 * 300.00017 * 1 2 3 30 30 H 1.09004 * 109.46800 * 60.00473 * 1 2 3 31 31 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47356 * 239.99682 * 2 1 3 33 33 H 1.09007 * 109.46964 * 120.00045 * 2 1 3 34 34 H 1.08994 * 109.47218 * 240.01588 * 4 3 2 35 35 H 1.09001 * 109.47393 * 0.02562 * 4 3 2 36 36 H 1.09005 * 109.46816 * 120.01160 * 4 3 2 37 37 H 1.08002 * 119.99381 * 2.60498 * 5 3 2 38 38 H 0.97003 * 119.99789 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47021 * 59.99923 * 9 8 6 40 40 H 1.09002 * 109.47290 * 300.00129 * 9 8 6 41 41 H 1.09007 * 110.92823 * 36.97274 * 12 10 9 42 42 H 1.09006 * 110.92810 * 273.31654 * 12 10 9 43 43 H 1.08996 * 109.90961 * 117.27861 * 14 13 12 44 44 H 1.09002 * 109.90710 * 238.35521 * 14 13 12 45 45 H 1.08997 * 109.48143 * 58.11153 * 16 13 12 46 46 H 1.08999 * 109.47907 * 298.07915 * 16 13 12 47 47 H 1.08995 * 109.59651 * 293.91704 * 17 16 13 48 48 H 1.08999 * 109.71981 * 173.53835 * 17 16 13 49 49 H 0.96995 * 119.99823 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.59276 * 173.70640 * 27 18 17 51 51 H 1.08998 * 109.59968 * 294.16918 * 27 18 17 52 52 H 1.09003 * 109.48025 * 301.91626 * 28 13 12 53 53 H 1.08999 * 109.48069 * 61.94793 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1764 2.1691 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.7843 3.4193 1.1531 7 8 2.9494 4.0090 0.1024 8 7 3.0006 4.0530 2.3227 9 6 3.4350 5.4521 2.3284 10 6 3.6072 5.9268 3.7727 11 1 4.3717 5.3385 4.2801 12 6 3.9595 7.4368 3.8127 13 6 3.4624 7.8444 5.2155 14 6 2.4490 6.7563 5.6008 15 8 2.3529 5.8530 4.4850 16 6 2.7831 9.2075 5.1538 17 6 2.2534 9.5766 6.5441 18 7 3.3554 9.4761 7.5108 19 6 3.6736 10.5359 8.3174 20 1 3.4769 11.5448 7.9860 21 6 4.2489 10.3135 9.5610 22 7 4.0528 9.1694 10.1816 23 14 5.3012 11.6377 10.3537 24 1 6.7311 11.3867 10.0411 25 1 4.9049 12.9675 9.8245 26 1 5.1042 11.6117 11.8253 27 6 4.1138 8.2203 7.5923 28 6 4.6273 7.8591 6.1986 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2164 2.4657 -1.4353 35 1 1.8717 1.5255 -2.1255 36 1 1.5447 3.0572 -1.2800 37 1 2.2856 1.4646 2.0750 38 1 2.8693 3.5825 3.1608 39 1 2.6856 6.0672 1.8302 40 1 4.3854 5.5396 1.8018 41 1 3.4237 7.9824 3.0359 42 1 5.0352 7.5881 3.7215 43 1 2.7976 6.2201 6.4834 44 1 1.4774 7.2082 5.8009 45 1 1.9539 9.1687 4.4474 46 1 3.5033 9.9581 4.8282 47 1 1.4561 8.8889 6.8258 48 1 1.8693 10.5965 6.5324 49 1 4.4545 9.0142 11.0507 50 1 4.9581 8.3465 8.2700 51 1 3.4649 7.4243 7.9574 52 1 5.0927 6.8738 6.2254 53 1 5.3614 8.5996 5.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324354988.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:59 Heat of formation + Delta-G solvation = -63.743448 kcal Electronic energy + Delta-G solvation = -29519.690905 eV Core-core repulsion = 25584.420575 eV Total energy + Delta-G solvation = -3935.270330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.36130 -39.73882 -36.97854 -36.42894 -34.72107 -33.40119 -31.55862 -31.22477 -30.43697 -30.04311 -28.13330 -26.70716 -25.48113 -24.38139 -23.91760 -22.43465 -21.59171 -21.16072 -20.60778 -18.93002 -18.34734 -17.14514 -16.85303 -16.39370 -15.69140 -15.42722 -15.18057 -14.89420 -14.86635 -14.74260 -14.46175 -13.96821 -13.76434 -13.55651 -13.33455 -13.21795 -13.17296 -12.89527 -12.73100 -12.47449 -12.30461 -12.23820 -11.97669 -11.96064 -11.73910 -11.39665 -11.33886 -11.26127 -11.14241 -11.03605 -10.74910 -10.47107 -10.27044 -10.18794 -9.91094 -9.73651 -9.55444 -9.53110 -9.43901 -9.39639 -9.02229 -8.45942 -6.72031 -5.84900 -3.22081 1.15363 3.07200 3.19413 3.35760 3.44212 3.45341 3.91097 4.35637 4.47619 4.48036 4.61592 4.80911 4.83069 4.88565 4.95909 5.00731 5.12950 5.18072 5.20870 5.30882 5.32800 5.34970 5.49697 5.51814 5.56185 5.61376 5.62216 5.67016 5.71409 5.77754 5.84383 5.88107 6.01082 6.03488 6.06635 6.17091 6.23326 6.25097 6.26248 6.34695 6.41721 6.55420 6.59929 6.63734 6.80086 6.92466 7.06034 7.23427 7.44894 7.49385 7.79934 8.15433 8.40135 9.16110 9.81376 10.39287 11.23585 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.001881 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.718574 B =14883.339040 C =15119.786182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.031 4.031 4 C -0.115 4.115 5 C -0.231 4.231 6 C 0.543 3.457 7 O -0.547 6.547 8 N -0.721 5.721 9 C 0.130 3.870 10 C 0.064 3.936 11 H 0.073 0.927 12 C -0.138 4.138 13 C -0.076 4.076 14 C 0.058 3.942 15 O -0.378 6.378 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.589 5.589 19 C -0.259 4.259 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.893 5.893 23 Si 0.894 3.106 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.292 1.292 27 C 0.171 3.829 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.018 0.982 48 H 0.055 0.945 49 H 0.253 0.747 50 H 0.077 0.923 51 H 0.020 0.980 52 H 0.049 0.951 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -16.505 -18.727 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.033 4.033 4 C -0.171 4.171 5 C -0.252 4.252 6 C 0.333 3.667 7 O -0.428 6.428 8 N -0.371 5.371 9 C 0.007 3.993 10 C 0.006 3.994 11 H 0.091 0.909 12 C -0.177 4.177 13 C -0.076 4.076 14 C -0.019 4.019 15 O -0.298 6.298 16 C -0.158 4.158 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.536 5.536 23 Si 0.724 3.276 24 H -0.215 1.215 25 H -0.203 1.203 26 H -0.219 1.219 27 C 0.045 3.955 28 C -0.167 4.167 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.239 0.761 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.036 0.964 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.095 0.905 51 H 0.038 0.962 52 H 0.068 0.932 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.066 -16.224 -19.324 25.417 hybrid contribution 0.753 0.552 1.228 1.543 sum -2.312 -15.672 -18.096 24.051 Atomic orbital electron populations 1.21719 0.94042 1.02101 1.02588 1.20775 0.96709 0.92621 1.03290 1.22566 0.90114 0.95177 0.95444 1.21021 1.03900 0.99411 0.92782 1.22380 1.08986 0.94809 0.99024 1.18557 0.77403 0.87252 0.83484 1.90771 1.52397 1.68465 1.31118 1.45816 1.69283 1.13236 1.08807 1.21418 1.00792 0.81880 0.95245 1.23340 0.87614 0.96817 0.91633 0.90873 1.23210 1.02095 0.94198 0.98165 1.21346 0.96267 0.96164 0.93847 1.23367 1.00266 0.89675 0.88543 1.88852 1.34377 1.64359 1.42206 1.21971 0.99271 0.95133 0.99440 1.20973 0.90427 0.98823 0.88120 1.44013 1.32828 1.12845 1.41462 1.19138 1.37464 0.86653 0.95563 0.91726 1.24974 1.01891 0.96970 0.95422 1.70145 1.44029 1.25298 1.14140 0.86399 0.81123 0.81801 0.78280 1.21480 1.20311 1.21866 1.20637 0.95931 0.87429 0.91472 1.22106 0.96117 0.99913 0.98576 0.92243 0.92309 0.92039 0.90485 0.90711 0.89872 0.93077 0.90024 0.85709 0.76074 0.90798 0.90350 0.90453 0.90162 0.91786 0.89543 0.92822 0.91996 0.96389 0.92663 0.93670 0.90470 0.96180 0.93229 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.44 16 2 C -0.10 -0.56 6.03 -27.88 -0.17 -0.73 16 3 C -0.03 -0.26 5.37 -101.17 -0.54 -0.80 16 4 C -0.12 -1.04 8.34 36.00 0.30 -0.74 16 5 C -0.23 -2.12 9.62 -37.81 -0.36 -2.48 16 6 C 0.54 6.44 7.72 -12.67 -0.10 6.34 16 7 O -0.55 -7.97 13.09 5.26 0.07 -7.90 16 8 N -0.72 -7.83 5.48 -61.49 -0.34 -8.17 16 9 C 0.13 1.49 5.44 -4.04 -0.02 1.47 16 10 C 0.06 0.77 3.42 -25.61 -0.09 0.68 16 11 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.14 -1.76 5.67 -24.93 -0.14 -1.91 16 13 C -0.08 -1.18 0.61 -154.09 -0.09 -1.27 16 14 C 0.06 0.90 6.16 37.47 0.23 1.13 16 15 O -0.38 -5.46 11.10 -35.23 -0.39 -5.85 16 16 C -0.12 -1.98 4.62 -26.88 -0.12 -2.10 16 17 C 0.14 2.89 6.21 -3.66 -0.02 2.87 16 18 N -0.59 -14.23 2.98 -172.46 -0.51 -14.75 16 19 C -0.26 -6.98 9.51 -15.06 -0.14 -7.13 16 20 H 0.07 1.73 7.94 -52.49 -0.42 1.32 16 21 C 0.01 0.20 4.68 -17.43 -0.08 0.11 16 22 N -0.89 -25.57 11.77 55.49 0.65 -24.92 16 23 Si 0.89 21.38 29.62 -169.99 -5.04 16.34 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.17 3.87 5.06 -3.88 -0.02 3.85 16 28 C -0.13 -2.26 4.57 -27.10 -0.12 -2.39 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.00 -51.93 -0.42 -0.04 16 34 H 0.08 0.87 7.24 -51.93 -0.38 0.49 16 35 H 0.05 0.36 8.00 -51.93 -0.42 -0.06 16 36 H 0.08 0.88 7.21 -51.93 -0.37 0.50 16 37 H 0.13 0.88 8.01 -52.49 -0.42 0.46 16 38 H 0.40 3.80 8.40 -40.82 -0.34 3.45 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 42 H 0.08 0.95 7.83 -51.93 -0.41 0.54 16 43 H 0.06 1.06 6.61 -51.93 -0.34 0.72 16 44 H 0.09 1.40 6.44 -51.93 -0.33 1.07 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.37 6.80 -51.93 -0.35 0.02 16 48 H 0.05 1.12 7.93 -51.93 -0.41 0.70 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.08 1.97 6.33 -51.93 -0.33 1.64 16 51 H 0.02 0.48 6.90 -51.93 -0.36 0.12 16 52 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 53 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -30.63 407.55 -10.03 -40.67 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -9.49 Total: 1.97 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.13 Total: -3.53 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.20 Total: -47.83 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.32 Total: -13.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.63 -10.03 -40.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324354988.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.076 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds