Wall clock time and date at job start Tue Mar 31 2020 20:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 C 1.50698 * 119.99975 * 274.99882 * 3 2 1 5 5 C 1.33001 * 120.00002 * 94.99653 * 3 2 1 6 6 C 1.47096 * 119.99843 * 182.60558 * 5 3 2 7 7 O 1.21616 * 120.00327 * 354.62859 * 6 5 3 8 8 N 1.34773 * 119.99888 * 174.63188 * 6 5 3 9 9 C 1.46501 * 120.00140 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47173 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.53928 * 61.39938 * 10 9 8 12 12 C 1.55107 * 110.60646 * 184.41543 * 10 9 8 13 13 C 1.54312 * 101.96970 * 155.14636 * 12 10 9 14 14 C 1.53602 * 104.68211 * 339.36280 * 13 12 10 15 15 O 1.43886 * 107.11438 * 357.91127 * 14 13 12 16 16 C 1.52425 * 110.05658 * 220.65137 * 13 12 10 17 17 C 1.53286 * 109.42471 * 178.09588 * 16 13 12 18 18 N 1.46939 * 108.72663 * 53.69566 * 17 16 13 19 19 C 1.36932 * 120.58976 * 125.80454 * 18 17 16 20 20 H 1.07996 * 119.99812 * 331.75240 * 19 18 17 21 21 C 1.38813 * 120.00056 * 151.75114 * 19 18 17 22 22 N 1.31623 * 119.99898 * 334.96532 * 21 19 18 23 23 Si 1.86801 * 120.00213 * 154.96406 * 21 19 18 24 24 H 1.48502 * 109.46763 * 265.01913 * 23 21 19 25 25 H 1.48500 * 109.46607 * 25.01310 * 23 21 19 26 26 H 1.48495 * 109.47225 * 145.01566 * 23 21 19 27 27 C 1.46931 * 118.81937 * 306.07296 * 18 17 16 28 28 C 1.52429 * 110.03950 * 98.04074 * 13 12 10 29 29 H 1.08996 * 109.47310 * 300.00017 * 1 2 3 30 30 H 1.09004 * 109.46800 * 60.00473 * 1 2 3 31 31 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47356 * 239.99682 * 2 1 3 33 33 H 1.09007 * 109.46964 * 120.00045 * 2 1 3 34 34 H 1.08994 * 109.47218 * 240.01588 * 4 3 2 35 35 H 1.09001 * 109.47393 * 0.02562 * 4 3 2 36 36 H 1.09005 * 109.46816 * 120.01160 * 4 3 2 37 37 H 1.08002 * 119.99381 * 2.60498 * 5 3 2 38 38 H 0.97003 * 119.99789 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47021 * 59.99923 * 9 8 6 40 40 H 1.09002 * 109.47290 * 300.00129 * 9 8 6 41 41 H 1.09007 * 110.92823 * 36.97274 * 12 10 9 42 42 H 1.09006 * 110.92810 * 273.31654 * 12 10 9 43 43 H 1.08996 * 109.90961 * 117.27861 * 14 13 12 44 44 H 1.09002 * 109.90710 * 238.35521 * 14 13 12 45 45 H 1.08997 * 109.48143 * 58.11153 * 16 13 12 46 46 H 1.08999 * 109.47907 * 298.07915 * 16 13 12 47 47 H 1.08995 * 109.59651 * 293.91704 * 17 16 13 48 48 H 1.08999 * 109.71981 * 173.53835 * 17 16 13 49 49 H 0.96995 * 119.99823 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.59276 * 173.70640 * 27 18 17 51 51 H 1.08998 * 109.59968 * 294.16918 * 27 18 17 52 52 H 1.09003 * 109.48025 * 301.91626 * 28 13 12 53 53 H 1.08999 * 109.48069 * 61.94793 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1764 2.1691 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.7843 3.4193 1.1531 7 8 2.9494 4.0090 0.1024 8 7 3.0006 4.0530 2.3227 9 6 3.4350 5.4521 2.3284 10 6 3.6072 5.9268 3.7727 11 1 4.3717 5.3385 4.2801 12 6 3.9595 7.4368 3.8127 13 6 3.4624 7.8444 5.2155 14 6 2.4490 6.7563 5.6008 15 8 2.3529 5.8530 4.4850 16 6 2.7831 9.2075 5.1538 17 6 2.2534 9.5766 6.5441 18 7 3.3554 9.4761 7.5108 19 6 3.6736 10.5359 8.3174 20 1 3.4769 11.5448 7.9860 21 6 4.2489 10.3135 9.5610 22 7 4.0528 9.1694 10.1816 23 14 5.3012 11.6377 10.3537 24 1 6.7311 11.3867 10.0411 25 1 4.9049 12.9675 9.8245 26 1 5.1042 11.6117 11.8253 27 6 4.1138 8.2203 7.5923 28 6 4.6273 7.8591 6.1986 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2164 2.4657 -1.4353 35 1 1.8717 1.5255 -2.1255 36 1 1.5447 3.0572 -1.2800 37 1 2.2856 1.4646 2.0750 38 1 2.8693 3.5825 3.1608 39 1 2.6856 6.0672 1.8302 40 1 4.3854 5.5396 1.8018 41 1 3.4237 7.9824 3.0359 42 1 5.0352 7.5881 3.7215 43 1 2.7976 6.2201 6.4834 44 1 1.4774 7.2082 5.8009 45 1 1.9539 9.1687 4.4474 46 1 3.5033 9.9581 4.8282 47 1 1.4561 8.8889 6.8258 48 1 1.8693 10.5965 6.5324 49 1 4.4545 9.0142 11.0507 50 1 4.9581 8.3465 8.2700 51 1 3.4649 7.4243 7.9574 52 1 5.0927 6.8738 6.2254 53 1 5.3614 8.5996 5.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324354988.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:58 Heat of formation + Delta-G solvation = -81.767799 kcal Electronic energy + Delta-G solvation = -29520.472500 eV Core-core repulsion = 25584.420575 eV Total energy + Delta-G solvation = -3936.051925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.52559 -40.70490 -38.35660 -37.19202 -35.74686 -35.02492 -33.00970 -32.08465 -31.72485 -31.45676 -29.06315 -28.09911 -26.53514 -25.84413 -24.76468 -23.99744 -22.93408 -22.18139 -21.71562 -19.94989 -19.56437 -18.57763 -17.94113 -17.40850 -16.92924 -16.69697 -16.51922 -16.21277 -15.87861 -15.64199 -15.42208 -15.33253 -15.04142 -14.80190 -14.66872 -14.47619 -14.17064 -13.94515 -13.77750 -13.50791 -13.43678 -13.34308 -13.04343 -12.99672 -12.79697 -12.61684 -12.60648 -12.48389 -12.31948 -12.25152 -12.16771 -11.95701 -11.84855 -11.74568 -11.45578 -11.08245 -11.01765 -10.64537 -10.57463 -10.48240 -10.32140 -9.82816 -8.69292 -7.90913 -5.30732 0.43206 1.44889 1.47568 1.56252 2.22436 2.35663 2.50789 2.84299 3.20865 3.50577 3.67482 3.69746 3.76178 3.86858 3.90506 4.04672 4.10961 4.21151 4.27498 4.34346 4.39260 4.45133 4.46943 4.61433 4.63652 4.67587 4.71345 4.74619 4.77298 4.81322 4.84616 4.85988 4.91241 5.02899 5.04265 5.05789 5.10408 5.14918 5.19323 5.24447 5.32911 5.36501 5.38243 5.44454 5.47035 5.59085 5.62265 5.66418 5.70881 5.93304 6.37129 6.61934 7.13564 7.29269 7.86019 8.38688 9.15116 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.001881 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.718574 B =14883.339040 C =15119.786182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.026 4.026 4 C -0.113 4.113 5 C -0.243 4.243 6 C 0.536 3.464 7 O -0.581 6.581 8 N -0.717 5.717 9 C 0.136 3.864 10 C 0.069 3.931 11 H 0.086 0.914 12 C -0.130 4.130 13 C -0.074 4.074 14 C 0.064 3.936 15 O -0.384 6.384 16 C -0.107 4.107 17 C 0.138 3.862 18 N -0.606 5.606 19 C -0.267 4.267 20 H 0.062 0.938 21 C -0.044 4.044 22 N -0.927 5.927 23 Si 0.957 3.043 24 H -0.286 1.286 25 H -0.269 1.269 26 H -0.296 1.296 27 C 0.178 3.822 28 C -0.114 4.114 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.148 0.852 38 H 0.413 0.587 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.015 0.985 48 H 0.050 0.950 49 H 0.250 0.750 50 H 0.041 0.959 51 H 0.002 0.998 52 H 0.070 0.930 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -17.640 -20.403 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.028 4.028 4 C -0.169 4.169 5 C -0.264 4.264 6 C 0.327 3.673 7 O -0.464 6.464 8 N -0.367 5.367 9 C 0.012 3.988 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.168 4.168 13 C -0.074 4.074 14 C -0.012 4.012 15 O -0.303 6.303 16 C -0.146 4.146 17 C 0.013 3.987 18 N -0.330 5.330 19 C -0.397 4.397 20 H 0.080 0.920 21 C -0.240 4.240 22 N -0.572 5.572 23 Si 0.786 3.214 24 H -0.213 1.213 25 H -0.193 1.193 26 H -0.223 1.223 27 C 0.052 3.948 28 C -0.153 4.153 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.249 0.751 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.020 0.980 52 H 0.088 0.912 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.793 -17.362 -21.013 27.401 hybrid contribution 0.589 0.887 1.713 2.017 sum -2.204 -16.475 -19.300 25.471 Atomic orbital electron populations 1.21724 0.93720 1.02910 1.02068 1.20829 0.96802 0.90864 1.04570 1.22835 0.88890 0.96350 0.94685 1.20951 1.02472 0.99197 0.94315 1.22481 1.09901 0.93597 1.00406 1.19046 0.76881 0.88255 0.83097 1.90757 1.54023 1.69427 1.32220 1.45799 1.68856 1.13033 1.09061 1.21325 1.00832 0.82064 0.94603 1.23412 0.86932 0.96717 0.91782 0.89655 1.23152 1.03156 0.94440 0.96046 1.21270 0.95353 0.95644 0.95163 1.23171 0.99722 0.89710 0.88646 1.88857 1.35670 1.63957 1.41842 1.21831 1.00007 0.95612 0.97164 1.21116 0.89559 0.98641 0.89386 1.44273 1.34290 1.12642 1.41775 1.19429 1.36976 0.87462 0.95876 0.91990 1.25681 1.03182 0.99028 0.96119 1.70260 1.45271 1.27208 1.14418 0.85408 0.79316 0.79771 0.76935 1.21302 1.19344 1.22296 1.20473 0.94175 0.86413 0.93736 1.21907 0.96796 1.00780 0.95812 0.92957 0.92689 0.90571 0.89206 0.89474 0.91495 0.90959 0.92048 0.83458 0.75142 0.92022 0.89537 0.89470 0.88603 0.93047 0.90381 0.90474 0.92051 0.96729 0.93106 0.94092 0.94066 0.98030 0.91180 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 71.98 0.71 -0.58 16 2 C -0.09 -0.85 6.03 29.85 0.18 -0.67 16 3 C -0.03 -0.39 5.37 -17.62 -0.09 -0.48 16 4 C -0.11 -1.99 8.34 71.24 0.59 -1.39 16 5 C -0.24 -4.08 9.62 23.43 0.23 -3.85 16 6 C 0.54 12.21 7.72 86.57 0.67 12.87 16 7 O -0.58 -16.86 13.09 -4.08 -0.05 -16.91 16 8 N -0.72 -14.45 5.48 -466.71 -2.56 -17.00 16 9 C 0.14 2.84 5.44 86.38 0.47 3.31 16 10 C 0.07 1.49 3.42 31.32 0.11 1.60 16 11 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 12 C -0.13 -2.92 5.67 31.76 0.18 -2.74 16 13 C -0.07 -2.16 0.61 -51.91 -0.03 -2.19 16 14 C 0.06 1.93 6.16 72.18 0.44 2.37 16 15 O -0.38 -10.33 11.10 -148.98 -1.65 -11.99 16 16 C -0.11 -3.38 4.62 30.50 0.14 -3.24 16 17 C 0.14 5.58 6.21 86.39 0.54 6.12 16 18 N -0.61 -29.70 2.98 -699.54 -2.08 -31.78 16 19 C -0.27 -14.62 9.51 84.03 0.80 -13.82 16 20 H 0.06 3.35 7.94 -2.91 -0.02 3.33 16 21 C -0.04 -2.42 4.68 84.86 0.40 -2.02 16 22 N -0.93 -54.54 11.77 21.65 0.25 -54.29 16 23 Si 0.96 44.58 29.62 68.60 2.03 46.61 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 27 C 0.18 8.18 5.06 86.25 0.44 8.61 16 28 C -0.11 -3.91 4.57 30.36 0.14 -3.77 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.09 0.62 8.00 -2.38 -0.02 0.60 16 34 H 0.07 1.40 7.24 -2.39 -0.02 1.38 16 35 H 0.07 0.91 8.00 -2.39 -0.02 0.89 16 36 H 0.06 1.34 7.21 -2.38 -0.02 1.32 16 37 H 0.15 1.72 8.01 -2.91 -0.02 1.70 16 38 H 0.41 6.94 8.40 -92.71 -0.78 6.16 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.85 7.75 -2.38 -0.02 1.83 16 42 H 0.10 1.92 7.83 -2.38 -0.02 1.90 16 43 H 0.05 1.68 6.61 -2.39 -0.02 1.67 16 44 H 0.08 2.48 6.44 -2.39 -0.02 2.46 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.01 0.61 6.80 -2.39 -0.02 0.59 16 48 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.04 2.17 6.33 -2.39 -0.02 2.15 16 51 H 0.00 0.08 6.90 -2.39 -0.02 0.07 16 52 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 53 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.52 407.55 1.94 -65.58 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.10 Total: 19.65 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.90 Total: 0.13 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -4.39 Total: -103.07 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.71 Total: -28.90 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.52 1.94 -65.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324354988.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.188 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds